SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.51: Anticodon-binding domain-like [52953] (6 superfamilies)
3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
Superfamily c.51.1: Class II aaRS ABD-related [52954] (3 families)
Family c.51.1.0: automated matches [227929] (1 protein)
not a true family
Protein automated matches [227930] (6 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267893] (3 PDB entries)
1. Domain for 3ugq:
  - Domain d3ugqa2: 3ugq A:341-462 [265515]
    Other proteins in same PDB: d3ugqa1
    automated match to d4hwta2
    complexed with k, so4, zn
2. Domain for 3uh0:
  - Domain d3uh0a2: 3uh0 A:341-462 [265517]
    Other proteins in same PDB: d3uh0a1
    automated match to d4hwta2
    protein/RNA complex; complexed with so4, tsb, zn
3. Domains for 4eo4:
  1. Domain d4eo4a2: 4eo4 A:341-462 [266224]
    Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
    automated match to d4hwta2
    protein/RNA complex; complexed with ssa, zn
  2. Domain d4eo4b2: 4eo4 B:341-462 [266226]
    Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
    automated match to d4hwta2
    protein/RNA complex; complexed with ssa, zn
  3. Domain d4eo4c2: 4eo4 C:341-462 [266228]
    Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
    automated match to d4hwta2
    protein/RNA complex; complexed with ssa, zn
  4. Domain d4eo4d2: 4eo4 D:341-462 [266230]
    Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
    automated match to d4hwta2
    protein/RNA complex; complexed with ssa, zn
Escherichia coli K-12 [TaxId:83333] [227937] (6 PDB entries)
1. Domains for 4hwo:
  1. Domain d4hwoa2: 4hwo A:533-642 [234714]
    Other proteins in same PDB: d4hwoa1, d4hwoa3, d4hwob1
    automated match to d4hwpb2
    protein/RNA complex; complexed with 409, zn
  2. Domain d4hwob2: 4hwo B:533-639 [234712]
    Other proteins in same PDB: d4hwoa1, d4hwoa3, d4hwob1
    automated match to d4hwpb2
    protein/RNA complex; complexed with 409, zn
2. Domains for 4hwp:
  1. Domain d4hwpa2: 4hwp A:533-642 [234715]
    Other proteins in same PDB: d4hwpa1, d4hwpa3, d4hwpb1
    automated match to d4hwpb2
    protein/RNA complex; complexed with x16, zn
  2. Domain d4hwpb2: 4hwp B:533-639 [227938]
    Other proteins in same PDB: d4hwpa1, d4hwpa3, d4hwpb1
    automated match to d1qf6a1
    protein/RNA complex; complexed with x16, zn
3. Domain for 4hwr:
  - Domain d4hwra2: 4hwr A:533-642 [234713]
    Other proteins in same PDB: d4hwra1, d4hwra3, d4hwra4, d4hwrb1
    automated match to d4hwpb2
    protein/RNA complex; complexed with 1b2, zn
4. Domains for 4hws:
  1. Domain d4hwsa2: 4hws A:533-642 [234719]
    Other proteins in same PDB: d4hwsa1, d4hwsa3, d4hwsb1
    automated match to d4hwpb2
    protein/RNA complex; complexed with 1b3, zn
  2. Domain d4hwsb2: 4hws B:533-639 [234721]
    Other proteins in same PDB: d4hwsa1, d4hwsa3, d4hwsb1
    automated match to d4hwpb2
    protein/RNA complex; complexed with 1b3, zn
5. Domains for 4p3o:
  1. Domain d4p3oa2: 4p3o A:533-642 [269732]
    Other proteins in same PDB: d4p3oa1, d4p3ob1
    automated match to d4hwra2
    protein/RNA complex; complexed with 2cr, gol, zn
  2. Domain d4p3ob2: 4p3o B:533-642 [269736]
    Other proteins in same PDB: d4p3oa1, d4p3ob1
    automated match to d4hwra2
    protein/RNA complex; complexed with 2cr, gol, zn
6. Domains for 4p3p:
  1. Domain d4p3pa2: 4p3p A:533-642 [269734]
    Other proteins in same PDB: d4p3pa1, d4p3pb1
    automated match to d4hwra2
    protein/RNA complex; complexed with 2cr, gol, zn
  2. Domain d4p3pb2: 4p3p B:533-642 [269730]
    Other proteins in same PDB: d4p3pa1, d4p3pb1
    automated match to d4hwra2
    protein/RNA complex; complexed with 2cr, gol, zn

Human (Homo sapiens) [TaxId:9606] [227931] (3 PDB entries)

Domains for 4hwt:
1. Domain d4hwta2: 4hwt A:645-752 [227932]
  Other proteins in same PDB: d4hwta1, d4hwtb1
  automated match to d1qf6a1
  protein/RNA complex; complexed with 1b2, zn
2. Domain d4hwtb2: 4hwt B:645-755 [227934]
  Other proteins in same PDB: d4hwta1, d4hwtb1
  automated match to d1qf6a1
  protein/RNA complex; complexed with 1b2, zn
Domains for 4p3n:
1. Domain d4p3na2: 4p3n A:612-723 [269746]
  Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
  automated match to d4hwra2
  protein/RNA complex; complexed with 2cr, zn
2. Domain d4p3nb2: 4p3n B:612-723 [269740]
  Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
  automated match to d4hwra2
  protein/RNA complex; complexed with 2cr, zn
3. Domain d4p3nc2: 4p3n C:612-723 [269742]
  Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
  automated match to d4hwra2
  protein/RNA complex; complexed with 2cr, zn
4. Domain d4p3nd2: 4p3n D:612-723 [269744]
  Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
  automated match to d4hwra2
  protein/RNA complex; complexed with 2cr, zn

Domains for 4ttv:

Domain d4ttva2: 4ttv A:612-723 [277577]
Other proteins in same PDB: d4ttva1, d4ttva3, d4ttvb1, d4ttvb3, d4ttvc1, d4ttvc3, d4ttvd1, d4ttvd3
automated match to d4hwra2
protein/RNA complex; complexed with bc9, zn

Domain d4ttvb2: 4ttv B:612-723 [277575]
Other proteins in same PDB: d4ttva1, d4ttva3, d4ttvb1, d4ttvb3, d4ttvc1, d4ttvc3, d4ttvd1, d4ttvd3
automated match to d4hwra2
protein/RNA complex; complexed with bc9, zn

Domain d4ttvc2: 4ttv C:612-723 [277580]
Other proteins in same PDB: d4ttva1, d4ttva3, d4ttvb1, d4ttvb3, d4ttvc1, d4ttvc3, d4ttvd1, d4ttvd3
automated match to d4hwra2
protein/RNA complex; complexed with bc9, zn

Domain d4ttvd2: 4ttv D:612-723 [277582]
Other proteins in same PDB: d4ttva1, d4ttva3, d4ttvb1, d4ttvb3, d4ttvc1, d4ttvc3, d4ttvd1, d4ttvd3
automated match to d4hwra2
protein/RNA complex; complexed with bc9, zn

Onchocerca volvulus [TaxId:6282] [359088] (1 PDB entry)
- Domain for 6mn8:
  - Domain d6mn8a2: 6mn8 A:328-461 [359089]
    Other proteins in same PDB: d6mn8a1, d6mn8a3
    automated match to d1hc7a1
    complexed with 2pn, amp, anp, gly, hfg, mg, ser
Phytophthora sojae [TaxId:67593] [371713] (1 PDB entry)
- Domains for 5zy9:
  1. Domain d5zy9c2: 5zy9 C:294-400 [371777]
    Other proteins in same PDB: d5zy9c1, d5zy9d1, d5zy9e1
    automated match to d4p3na2
    complexed with 2cr, zn
  2. Domain d5zy9d2: 5zy9 D:294-400 [371722]
    Other proteins in same PDB: d5zy9c1, d5zy9d1, d5zy9e1
    automated match to d4p3na2
    complexed with 2cr, zn
  3. Domain d5zy9e2: 5zy9 E:294-400 [371714]
    Other proteins in same PDB: d5zy9c1, d5zy9d1, d5zy9e1
    automated match to d4p3na2
    complexed with 2cr, zn
Salmonella enterica [TaxId:1192560] [378975] (5 PDB entries)
1. Domains for 6l2p:
  1. Domain d6l2pa2: 6l2p A:533-642 [378994]
    Other proteins in same PDB: d6l2pa1, d6l2pb1, d6l2pb3
    automated match to d1qf6a1
    complexed with zn
  2. Domain d6l2pb2: 6l2p B:533-640 [378979]
    Other proteins in same PDB: d6l2pa1, d6l2pb1, d6l2pb3
    automated match to d1qf6a1
    complexed with zn
2. Domains for 6l2q:
  1. Domain d6l2qa2: 6l2q A:533-642 [378976]
    Other proteins in same PDB: d6l2qa1, d6l2qa3, d6l2qb1, d6l2qb3
    automated match to d1qf6a1
    protein/RNA complex; complexed with e4o, edo, zn
  2. Domain d6l2qb2: 6l2q B:533-640 [379019]
    Other proteins in same PDB: d6l2qa1, d6l2qa3, d6l2qb1, d6l2qb3
    automated match to d1qf6a1
    protein/RNA complex; complexed with e4o, edo, zn
3. Domains for 7cbg:
  1. Domain d7cbga2: 7cbg A:533-641 [389903]
    Other proteins in same PDB: d7cbga1, d7cbga3, d7cbgb1, d7cbgb3
    automated match to d1qf6a1
    protein/RNA complex; complexed with fql, zn
  2. Domain d7cbgb2: 7cbg B:533-640 [389974]
    Other proteins in same PDB: d7cbga1, d7cbga3, d7cbgb1, d7cbgb3
    automated match to d1qf6a1
    protein/RNA complex; complexed with fql, zn
4. Domains for 7cbh:
  1. Domain d7cbha2: 7cbh A:533-641 [389882]
    Other proteins in same PDB: d7cbha1, d7cbha3, d7cbhb1, d7cbhb3
    automated match to d1qf6a1
    protein/RNA complex; complexed with fqr, zn
  2. Domain d7cbhb2: 7cbh B:533-641 [389889]
    Other proteins in same PDB: d7cbha1, d7cbha3, d7cbhb1, d7cbhb3
    automated match to d1qf6a1
    protein/RNA complex; complexed with fqr, zn
5. Domains for 7cbi:
  1. Domain d7cbia2: 7cbi A:533-641 [389893]
    Other proteins in same PDB: d7cbia1, d7cbia3, d7cbib1, d7cbib3
    automated match to d1qf6a1
    protein/RNA complex; complexed with edo, fqu, gol, zn
  2. Domain d7cbib2: 7cbi B:533-641 [389951]
    Other proteins in same PDB: d7cbia1, d7cbia3, d7cbib1, d7cbib3
    automated match to d1qf6a1
    protein/RNA complex; complexed with edo, fqu, gol, zn

More info for Protein automated matches from c.51.1.0: automated matches

Timeline for Protein automated matches from c.51.1.0: automated matches:

Protein automated matches from c.51.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from c.51.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from c.51.1.0: automated matches appears in the current release, SCOPe 2.08