Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1856157Fold c.51: Anticodon-binding domain-like [52953] (6 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
  4. 1856158Superfamily c.51.1: Class II aaRS ABD-related [52954] (3 families) (S)
  5. 1856277Family c.51.1.0: automated matches [227929] (1 protein)
    not a true family
  6. 1856278Protein automated matches [227930] (3 species)
    not a true protein

Species:

  1. 1856279Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267893] (3 PDB entries)
    1. Domain for 3ugq:
    2. Domain for 3uh0:
    3. Domains for 4eo4:
      1. 1856282Domain d4eo4a2: 4eo4 A:341-462 [266224]
        Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
        automated match to d4hwta2
        protein/RNA complex; complexed with ssa, zn
      2. 1856283Domain d4eo4b2: 4eo4 B:341-462 [266226]
        Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
        automated match to d4hwta2
        protein/RNA complex; complexed with ssa, zn
      3. 1856284Domain d4eo4c2: 4eo4 C:341-462 [266228]
        Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
        automated match to d4hwta2
        protein/RNA complex; complexed with ssa, zn
      4. 1856285Domain d4eo4d2: 4eo4 D:341-462 [266230]
        Other proteins in same PDB: d4eo4a1, d4eo4b1, d4eo4c1, d4eo4d1
        automated match to d4hwta2
        protein/RNA complex; complexed with ssa, zn
  2. 1856286Escherichia coli K-12 [TaxId:83333] [227937] (6 PDB entries)
    1. Domains for 4hwo:
      1. 1856291Domain d4hwoa2: 4hwo A:533-650 [234714]
        Other proteins in same PDB: d4hwoa1, d4hwob1
        automated match to d4hwpb2
        protein/RNA complex; complexed with 409, zn
      2. 1856292Domain d4hwob2: 4hwo B:533-639 [234712]
        Other proteins in same PDB: d4hwoa1, d4hwob1
        automated match to d4hwpb2
        protein/RNA complex; complexed with 409, zn
    2. Domains for 4hwp:
      1. 1856289Domain d4hwpa2: 4hwp A:533-650 [234715]
        Other proteins in same PDB: d4hwpa1, d4hwpb1
        automated match to d4hwpb2
        protein/RNA complex; complexed with x16, zn
      2. 1856290Domain d4hwpb2: 4hwp B:533-639 [227938]
        Other proteins in same PDB: d4hwpa1, d4hwpb1
        automated match to d1qf6a1
        protein/RNA complex; complexed with x16, zn
    3. Domain for 4hwr:
    4. Domains for 4hws:
      1. 1856287Domain d4hwsa2: 4hws A:533-650 [234719]
        Other proteins in same PDB: d4hwsa1, d4hwsb1
        automated match to d4hwpb2
        protein/RNA complex; complexed with 1b3, zn
      2. 1856288Domain d4hwsb2: 4hws B:533-639 [234721]
        Other proteins in same PDB: d4hwsa1, d4hwsb1
        automated match to d4hwpb2
        protein/RNA complex; complexed with 1b3, zn
    5. Domains for 4p3o:
      1. 1856296Domain d4p3oa2: 4p3o A:533-642 [269732]
        Other proteins in same PDB: d4p3oa1, d4p3ob1
        automated match to d4hwra2
        complexed with 2cr, gol, zn
      2. 1856297Domain d4p3ob2: 4p3o B:533-642 [269736]
        Other proteins in same PDB: d4p3oa1, d4p3ob1
        automated match to d4hwra2
        complexed with 2cr, gol, zn
    6. Domains for 4p3p:
      1. 1856294Domain d4p3pa2: 4p3p A:533-642 [269734]
        Other proteins in same PDB: d4p3pa1, d4p3pb1
        automated match to d4hwra2
        protein/RNA complex; complexed with 2cr, gol, zn
      2. 1856295Domain d4p3pb2: 4p3p B:533-642 [269730]
        Other proteins in same PDB: d4p3pa1, d4p3pb1
        automated match to d4hwra2
        protein/RNA complex; complexed with 2cr, gol, zn
  3. 1856298Human (Homo sapiens) [TaxId:9606] [227931] (3 PDB entries)
    1. Domains for 4hwt:
      1. 1856299Domain d4hwta2: 4hwt A:645-752 [227932]
        Other proteins in same PDB: d4hwta1, d4hwtb1
        automated match to d1qf6a1
        protein/RNA complex; complexed with 1b2, zn
      2. 1856300Domain d4hwtb2: 4hwt B:645-755 [227934]
        Other proteins in same PDB: d4hwta1, d4hwtb1
        automated match to d1qf6a1
        protein/RNA complex; complexed with 1b2, zn
    2. Domains for 4p3n:
      1. 1856301Domain d4p3na2: 4p3n A:612-723 [269746]
        Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
        automated match to d4hwra2
        protein/RNA complex; complexed with 2cr, zn
      2. 1856302Domain d4p3nb2: 4p3n B:612-723 [269740]
        Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
        automated match to d4hwra2
        protein/RNA complex; complexed with 2cr, zn
      3. 1856303Domain d4p3nc2: 4p3n C:612-723 [269742]
        Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
        automated match to d4hwra2
        protein/RNA complex; complexed with 2cr, zn
      4. 1856304Domain d4p3nd2: 4p3n D:612-723 [269744]
        Other proteins in same PDB: d4p3na1, d4p3nb1, d4p3nc1, d4p3nd1
        automated match to d4hwra2
        protein/RNA complex; complexed with 2cr, zn
    3. Domains for 4ttv:
      1. 1856305Domain d4ttva2: 4ttv A:612-723 [277577]
        Other proteins in same PDB: d4ttva1, d4ttvb1, d4ttvc1, d4ttvd1
        automated match to d4hwra2
        protein/RNA complex; complexed with bc9, zn
      2. 1856306Domain d4ttvb2: 4ttv B:612-723 [277575]
        Other proteins in same PDB: d4ttva1, d4ttvb1, d4ttvc1, d4ttvd1
        automated match to d4hwra2
        protein/RNA complex; complexed with bc9, zn
      3. 1856307Domain d4ttvc2: 4ttv C:612-723 [277580]
        Other proteins in same PDB: d4ttva1, d4ttvb1, d4ttvc1, d4ttvd1
        automated match to d4hwra2
        protein/RNA complex; complexed with bc9, zn
      4. 1856308Domain d4ttvd2: 4ttv D:612-723 [277582]
        Other proteins in same PDB: d4ttva1, d4ttvb1, d4ttvc1, d4ttvd1
        automated match to d4hwra2
        protein/RNA complex; complexed with bc9, zn

More info for Protein automated matches from c.51.1.0: automated matches

Timeline for Protein automated matches from c.51.1.0: automated matches: