Lineage for d4kdoc_ (4kdo C:)

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1305718Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 1305719Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 1305764Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)
  6. 1305765Protein Hemagglutinin [49824] (6 species)
    includes rudiment esterase domain
  7. 1305775Species Influenza A virus, different strains [TaxId:11320] [49825] (86 PDB entries)
  8. 1305874Domain d4kdoc_: 4kdo C: [227561]
    automated match to d4kpsa_
    complexed with nag, sia

Details for d4kdoc_

PDB Entry: 4kdo (more details), 2.4 Å

PDB Description: Crystal structure of the hemagglutinin of ferret-transmissible H5N1 virus in complex with human receptor analog LSTc
PDB Compounds: (C:) Hemagglutinin

SCOPe Domain Sequences for d4kdoc_:

Sequence; same for both SEQRES and ATOM records: (download)

>d4kdoc_ b.19.1.2 (C:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp

SCOPe Domain Coordinates for d4kdoc_:

Click to download the PDB-style file with coordinates for d4kdoc_.
(The format of our PDB-style files is described here.)

Timeline for d4kdoc_:

  • d4kdoc_ appears in periodic updates to SCOPe 2.03 starting on 2013-12-06
  • d4kdoc_ appears in SCOPe 2.04
  • d4kdoc_ appears in the current release, SCOPe 2.07, called d4kdoc1