SCOPe 2.08: Domain d4kdoc1: 4kdo C:5-325

Lineage for d4kdoc1 (4kdo C:5-325)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (22 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (131 PDB entries)

8. Domain d4kdoc1: 4kdo C:5-325 [227561]
   Other proteins in same PDB: d4kdoa2, d4kdob_, d4kdoc2, d4kdod_, d4kdoe2, d4kdof_
   automated match to d4kpsa_
   complexed with nag, sia

Details for d4kdoc1

PDB Entry: 4kdo, 2.4 Å

PDB Description: crystal structure of the hemagglutinin of ferret-transmissible h5n1 virus in complex with human receptor analog lstc

PDB Compounds: (C:) Hemagglutinin

SCOPe Domain Sequences for d4kdoc1:

Sequence; same for both SEQRES and ATOM records:

>d4kdoc1 b.19.1.2 (C:5-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgihh
pndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlaiglrnsp

Timeline for d4kdoc1:

• d4kdoc1 first appeared in SCOPe 2.03, called d4kdoc_
  
• d4kdoc1 appears in SCOPe 2.07