SCOPe 2.06: Domain d4kdme1: 4kdm E:5-325

Lineage for d4kdme1 (4kdm E:5-325)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (9 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (116 PDB entries)

8. Domain d4kdme1: 4kdm E:5-325 [227554]
   Other proteins in same PDB: d4kdma2, d4kdmb_, d4kdmc2, d4kdmd_, d4kdme2, d4kdmf_
   automated match to d4kpsa_
   complexed with nag

Details for d4kdme1

PDB Entry: 4kdm, 2.5 Å

PDB Description: crystal structure of the hemagglutinin of ferret-transmissible h5n1 virus

PDB Compounds: (E:) Hemagglutinin

SCOPe Domain Sequences for d4kdme1:

Sequence; same for both SEQRES and ATOM records:

>d4kdme1 b.19.1.2 (E:5-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgihh
pndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlaiglrnsp

Timeline for d4kdme1:

• d4kdme1 first appeared in SCOPe 2.03, called d4kdme_
  
• d4kdme1 was called d4kdme_ in SCOPe 2.05
  
• d4kdme1 appears in SCOPe 2.07
  
• d4kdme1 appears in the current release, SCOPe 2.08