Lineage for d4kdnc1 (4kdn C:5-325)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2385148Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 2385149Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 2385196Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)
  6. 2385197Protein Hemagglutinin [49824] (19 species)
    includes rudiment esterase domain
  7. 2385289Species Influenza A virus, different strains [TaxId:11320] [49825] (127 PDB entries)
  8. 2385484Domain d4kdnc1: 4kdn C:5-325 [227553]
    Other proteins in same PDB: d4kdna2, d4kdnb_, d4kdnc2, d4kdnd_, d4kdne2, d4kdnf_
    automated match to d4kpsa_
    complexed with nag, sia

Details for d4kdnc1

PDB Entry: 4kdn (more details), 2.48 Å

PDB Description: crystal structure of the hemagglutinin of ferret-transmissible h5n1 virus in complex with avian receptor analog lsta
PDB Compounds: (C:) Hemagglutinin

SCOPe Domain Sequences for d4kdnc1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4kdnc1 b.19.1.2 (C:5-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgihh
pndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlaiglrnsp

SCOPe Domain Coordinates for d4kdnc1:

Click to download the PDB-style file with coordinates for d4kdnc1.
(The format of our PDB-style files is described here.)

Timeline for d4kdnc1: