SCOPe 2.07: Domain d4kdna1: 4kdn A:5-325

Lineage for d4kdna1 (4kdn A:5-325)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (19 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (127 PDB entries)

8. Domain d4kdna1: 4kdn A:5-325 [227552]
   Other proteins in same PDB: d4kdna2, d4kdnb_, d4kdnc2, d4kdnd_, d4kdne2, d4kdnf_
   automated match to d4kpsa_
   complexed with nag, sia

Details for d4kdna1

PDB Entry: 4kdn, 2.48 Å

PDB Description: crystal structure of the hemagglutinin of ferret-transmissible h5n1 virus in complex with avian receptor analog lsta

PDB Compounds: (A:) Hemagglutinin

SCOPe Domain Sequences for d4kdna1:

Sequence; same for both SEQRES and ATOM records:

>d4kdna1 b.19.1.2 (A:5-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgihh
pndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlaiglrnsp

Timeline for d4kdna1:

• d4kdna1 first appeared in SCOPe 2.03, called d4kdna_
  
• d4kdna1 appears in SCOPe 2.06
  
• d4kdna1 appears in the current release, SCOPe 2.08