Lineage for d3ejzf1 (3ejz F:1-106)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2021376Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2022563Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2023085Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (40 PDB entries)
    Uniprot P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1
  8. 2023110Domain d3ejzf1: 3ejz F:1-106 [227318]
    Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzd2, d3ejzf2
    automated match to d1otsd1
    complexed with br; mutant

Details for d3ejzf1

PDB Entry: 3ejz (more details), 2.9 Å

PDB Description: structure of e203v mutant e.coli cl-/h+ exchanger, clc-ec1
PDB Compounds: (F:) Fab fragment, light chain

SCOPe Domain Sequences for d3ejzf1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3ejzf1 b.1.1.1 (F:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
divltqspaimsaapgdkvtmtcsasssvsyihwyqqksgtspkrwiydtskltsgvpvr
fsgsgsgtsysltintmeaedaatyycqqwsshpqtfgggtkleil

SCOPe Domain Coordinates for d3ejzf1:

Click to download the PDB-style file with coordinates for d3ejzf1.
(The format of our PDB-style files is described here.)

Timeline for d3ejzf1: