Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1361462Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 1361463Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 1362051Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 1362052Protein automated matches [227126] (2 species)
    not a true protein

Species:

  1. 1362053Bacillus stearothermophilus [TaxId:1422] [226816] (3 PDB entries)
    1. Domains for 3duf:
      1. 1362062Domain d3dufb1: 3duf B:1-186 [199277]
        Other proteins in same PDB: d3dufa_, d3dufb2, d3dufc_, d3dufd2, d3dufe_, d3duff2, d3dufg_, d3dufh2
        automated match to d1umdb1
        complexed with k, mg, r1t
      2. 1362063Domain d3dufd1: 3duf D:1-186 [199279]
        Other proteins in same PDB: d3dufa_, d3dufb2, d3dufc_, d3dufd2, d3dufe_, d3duff2, d3dufg_, d3dufh2
        automated match to d1umdb1
        complexed with k, mg, r1t
      3. 1362064Domain d3duff1: 3duf F:1-186 [199281]
        Other proteins in same PDB: d3dufa_, d3dufb2, d3dufc_, d3dufd2, d3dufe_, d3duff2, d3dufg_, d3dufh2
        automated match to d1umdb1
        complexed with k, mg, r1t
      4. 1362065Domain d3dufh1: 3duf H:1-186 [199283]
        Other proteins in same PDB: d3dufa_, d3dufb2, d3dufc_, d3dufd2, d3dufe_, d3duff2, d3dufg_, d3dufh2
        automated match to d1umdb1
        complexed with k, mg, r1t
    2. Domains for 3dv0:
      1. 1362058Domain d3dv0b1: 3dv0 B:1-186 [199287]
        Other proteins in same PDB: d3dv0a_, d3dv0b2, d3dv0c_, d3dv0d2, d3dv0e_, d3dv0f2, d3dv0g_, d3dv0h2
        automated match to d1umdb1
        complexed with k, mg, pyr, tpw
      2. 1362059Domain d3dv0d1: 3dv0 D:1-186 [199289]
        Other proteins in same PDB: d3dv0a_, d3dv0b2, d3dv0c_, d3dv0d2, d3dv0e_, d3dv0f2, d3dv0g_, d3dv0h2
        automated match to d1umdb1
        complexed with k, mg, pyr, tpw
      3. 1362060Domain d3dv0f1: 3dv0 F:1-186 [199291]
        Other proteins in same PDB: d3dv0a_, d3dv0b2, d3dv0c_, d3dv0d2, d3dv0e_, d3dv0f2, d3dv0g_, d3dv0h2
        automated match to d1umdb1
        complexed with k, mg, pyr, tpw
      4. 1362061Domain d3dv0h1: 3dv0 H:1-186 [199293]
        Other proteins in same PDB: d3dv0a_, d3dv0b2, d3dv0c_, d3dv0d2, d3dv0e_, d3dv0f2, d3dv0g_, d3dv0h2
        automated match to d1umdb1
        complexed with k, mg, pyr, tpw
    3. Domains for 3dva:
      1. 1362054Domain d3dvab1: 3dva B:1-186 [199295]
        Other proteins in same PDB: d3dvaa_, d3dvab2, d3dvac_, d3dvad2, d3dvae_, d3dvaf2, d3dvag_, d3dvah2
        automated match to d1umdb1
        complexed with k, mg, tpw
      2. 1362055Domain d3dvad1: 3dva D:1-186 [199297]
        Other proteins in same PDB: d3dvaa_, d3dvab2, d3dvac_, d3dvad2, d3dvae_, d3dvaf2, d3dvag_, d3dvah2
        automated match to d1umdb1
        complexed with k, mg, tpw
      3. 1362056Domain d3dvaf1: 3dva F:1-186 [199299]
        Other proteins in same PDB: d3dvaa_, d3dvab2, d3dvac_, d3dvad2, d3dvae_, d3dvaf2, d3dvag_, d3dvah2
        automated match to d1umdb1
        complexed with k, mg, tpw
      4. 1362057Domain d3dvah1: 3dva H:1-186 [199301]
        Other proteins in same PDB: d3dvaa_, d3dvab2, d3dvac_, d3dvad2, d3dvae_, d3dvaf2, d3dvag_, d3dvah2
        automated match to d1umdb1
        complexed with k, mg, tpw
  2. 1362066Human (Homo sapiens) [TaxId:9606] [226777] (4 PDB entries)
    1. Domains for 2j9f:
      1. 1362067Domain d2j9fb1: 2j9f B:14-204 [198096]
        Other proteins in same PDB: d2j9fa_, d2j9fb2, d2j9fc_, d2j9fd2
        automated match to d1ik6a1
        complexed with gol, k, mn, thv
      2. 1362068Domain d2j9fd1: 2j9f D:14-204 [198098]
        Other proteins in same PDB: d2j9fa_, d2j9fb2, d2j9fc_, d2j9fd2
        automated match to d1ik6a1
        complexed with gol, k, mn, thv
    2. Domains for 3exe:
      1. 1362069Domain d3exeb1: 3exe B:1-185 [209699]
        Other proteins in same PDB: d3exea_, d3exeb2, d3exec_, d3exed2, d3exee_, d3exef2, d3exeg_, d3exeh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
      2. 1362070Domain d3exed1: 3exe D:1-185 [209702]
        Other proteins in same PDB: d3exea_, d3exeb2, d3exec_, d3exed2, d3exee_, d3exef2, d3exeg_, d3exeh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
      3. 1362071Domain d3exef1: 3exe F:1-185 [209705]
        Other proteins in same PDB: d3exea_, d3exeb2, d3exec_, d3exed2, d3exee_, d3exef2, d3exeg_, d3exeh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
      4. 1362072Domain d3exeh1: 3exe H:1-185 [209708]
        Other proteins in same PDB: d3exea_, d3exeb2, d3exec_, d3exed2, d3exee_, d3exef2, d3exeg_, d3exeh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
    3. Domains for 3exh:
      1. 1362074Domain d3exhb1: 3exh B:1-185 [209711]
        Other proteins in same PDB: d3exha_, d3exhb2, d3exhc_, d3exhd2, d3exhe_, d3exhf2, d3exhg_, d3exhh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
      2. 1362075Domain d3exhd1: 3exh D:1-185 [209714]
        Other proteins in same PDB: d3exha_, d3exhb2, d3exhc_, d3exhd2, d3exhe_, d3exhf2, d3exhg_, d3exhh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
      3. 1362076Domain d3exhf1: 3exh F:1-185 [209717]
        Other proteins in same PDB: d3exha_, d3exhb2, d3exhc_, d3exhd2, d3exhe_, d3exhf2, d3exhg_, d3exhh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
      4. 1362077Domain d3exhh1: 3exh H:1-185 [209720]
        Other proteins in same PDB: d3exha_, d3exhb2, d3exhc_, d3exhd2, d3exhe_, d3exhf2, d3exhg_, d3exhh2
        automated match to d1umdb1
        complexed with gol, k, mn, tpp
    4. Domain for 3exi:

More info for Protein automated matches from c.36.1.0: automated matches

Timeline for Protein automated matches from c.36.1.0: automated matches: