SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.28: Cryptochrome/photolyase, N-terminal domain [52424] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like
Superfamily c.28.1: Cryptochrome/photolyase, N-terminal domain [52425] (2 families)
automatically mapped to Pfam PF00875
Family c.28.1.0: automated matches [227292] (1 protein)
not a true family
Protein automated matches [227113] (4 species)
not a true protein

Species:

Chlamydomonas reinhardtii [TaxId:3055] [355318] (3 PDB entries)
1. Domain for 5zm0:
  - Domain d5zm0a1: 5zm0 A:3-207 [355319]
    Other proteins in same PDB: d5zm0a2
    automated match to d4mlpa1
    complexed with cl, fad, gol, mes
2. Domain for 6fn2:
  - Domain d6fn2a1: 6fn2 A:4-207 [355506]
    Other proteins in same PDB: d6fn2a2
    automated match to d4mlpa1
    complexed with cl, fad, gol, hdf, po4
3. Domain for 6fn3:
  - Domain d6fn3a1: 6fn3 A:3-207 [355649]
    Other proteins in same PDB: d6fn3a2
    automated match to d4mlpa1
    complexed with fad, gol, mes, po4
Columba livia [TaxId:8932] [373721] (2 PDB entries)
1. Domain for 6ptz:
  - Domain d6ptza1: 6ptz A:1-205 [373734]
    Other proteins in same PDB: d6ptza2
    automated match to d4mlpa1
    complexed with fad, gol, mg, peg; mutant
2. Domain for 6pu0:
  - Domain d6pu0a1: 6pu0 A:1-205 [373722]
    Other proteins in same PDB: d6pu0a2
    automated match to d4mlpa1
    complexed with edo, fad, gol, peg, pge
Fruit fly (Drosophila melanogaster) [TaxId:7227] [231380] (6 PDB entries)
1. Domain for 2wb2:
  - Domain d2wb2a1: 2wb2 A:2-215 [231381]
    Other proteins in same PDB: d2wb2a2
    automated match to d4mlpd1
    protein/DNA complex; complexed with fad
2. Domain for 2wq6:
  - Domain d2wq6a1: 2wq6 A:2-215 [244203]
    Other proteins in same PDB: d2wq6a2
    automated match to d2wb2a1
    protein/DNA complex; complexed with fad
3. Domain for 2wq7:
  - Domain d2wq7a1: 2wq7 A:2-215 [244205]
    Other proteins in same PDB: d2wq7a2
    automated match to d2wb2a1
    protein/DNA complex; complexed with fad
4. Domain for 3cvu:
  - Domain d3cvua1: 3cvu A:5-215 [245564]
    Other proteins in same PDB: d3cvua2
    automated match to d2wb2a1
    protein/DNA complex; complexed with fad
5. Domain for 3cvv:
  - Domain d3cvva1: 3cvv A:1-215 [245566]
    Other proteins in same PDB: d3cvva2, d3cvva3
    automated match to d2wb2a1
    protein/DNA complex; complexed with edo, fad, fo1
6. Domain for 3cvy:
  - Domain d3cvya1: 3cvy A:5-215 [245568]
    Other proteins in same PDB: d3cvya2
    automated match to d2wb2a1
    protein/DNA complex; complexed with fad
Mouse (Mus musculus) [TaxId:10090] [226619] (17 PDB entries)
1. Domain for 4i6e:
  - Domain d4i6ea1: 4i6e A:21-223 [234814]
    Other proteins in same PDB: d4i6ea2
    automated match to d4mlpd1
2. Domains for 4i6g:
  1. Domain d4i6ga1: 4i6g A:21-223 [234816]
    Other proteins in same PDB: d4i6ga2, d4i6gb2
    automated match to d4mlpd1
    complexed with fad
  2. Domain d4i6gb1: 4i6g B:21-223 [234818]
    Other proteins in same PDB: d4i6ga2, d4i6gb2
    automated match to d4mlpd1
    complexed with fad
3. Domain for 4i6j:
  - Domain d4i6ja1: 4i6j A:21-225 [222958]
    Other proteins in same PDB: d4i6jc1, d4i6jc2
    automated match to d1qnfa2
4. Domains for 4mlp:
  1. Domain d4mlpa1: 4mlp A:21-223 [228407]
    Other proteins in same PDB: d4mlpa2, d4mlpb2, d4mlpc2, d4mlpd2
    automated match to d4k0ra1
    complexed with 2cx
  2. Domain d4mlpb1: 4mlp B:21-223 [229903]
    Other proteins in same PDB: d4mlpa2, d4mlpb2, d4mlpc2, d4mlpd2
    automated match to d4mlpd1
    complexed with 2cx
  3. Domain d4mlpc1: 4mlp C:21-223 [229905]
    Other proteins in same PDB: d4mlpa2, d4mlpb2, d4mlpc2, d4mlpd2
    automated match to d4mlpd1
    complexed with 2cx
  4. Domain d4mlpd1: 4mlp D:21-223 [228406]
    Other proteins in same PDB: d4mlpa2, d4mlpb2, d4mlpc2, d4mlpd2
    automated match to d4k0ra1
    complexed with 2cx
5. Domains for 4u8h:
  1. Domain d4u8ha1: 4u8h A:21-223 [260074]
    Other proteins in same PDB: d4u8ha2, d4u8hc2
    automated match to d4mlpa1
    complexed with zn
  2. Domain d4u8hc1: 4u8h C:21-223 [260076]
    Other proteins in same PDB: d4u8ha2, d4u8hc2
    automated match to d4mlpa1
    complexed with zn
6. Domain for 6kx4:
  - Domain d6kx4a1: 6kx4 A:2-205 [383177]
    Other proteins in same PDB: d6kx4a2
    automated match to d4mlpa1
7. Domain for 6kx5:
  - Domain d6kx5a1: 6kx5 A:2-205 [383019]
    Other proteins in same PDB: d6kx5a2
    automated match to d4mlpa1
    complexed with dyr
8. Domains for 6kx6:
  1. Domain d6kx6a1: 6kx6 A:2-205 [383032]
    Other proteins in same PDB: d6kx6a2, d6kx6b2
    automated match to d4mlpa1
    complexed with dyu
  2. Domain d6kx6b1: 6kx6 B:1-205 [382972]
    Other proteins in same PDB: d6kx6a2, d6kx6b2
    automated match to d4mlpa1
    complexed with dyu
9. Domain for 6kx7:
  - Domain d6kx7a1: 6kx7 A:3-205 [382994]
    Other proteins in same PDB: d6kx7a2
    automated match to d4mlpa1
    complexed with dyx
10. Domains for 6kx8:
  1. Domain d6kx8a1: 6kx8 A:20-223 [382992]
    Other proteins in same PDB: d6kx8a2, d6kx8b2
    automated match to d4mlpa1
    complexed with dyx
  2. Domain d6kx8b1: 6kx8 B:20-223 [382969]
    Other proteins in same PDB: d6kx8a2, d6kx8b2
    automated match to d4mlpa1
    complexed with dyx
11. Domains for 6lue:
  1. Domain d6luea1: 6lue A:2-205 [387138]
    Other proteins in same PDB: d6luea2, d6lueb2, d6lueb3
    automated match to d4mlpa1
    complexed with eul
  2. Domain d6lueb1: 6lue B:1-205 [387147]
    Other proteins in same PDB: d6luea2, d6lueb2, d6lueb3
    automated match to d4mlpa1
    complexed with eul
12. Domain for 7d0m:
  - Domain d7d0ma1: 7d0m A:2-205 [404951]
    Other proteins in same PDB: d7d0ma2
    automated match to d4mlpa1
    complexed with peg, pg4
13. Domain for 7d0n:
  - Domain d7d0na1: 7d0n A:21-223 [404929]
    Other proteins in same PDB: d7d0na2
    automated match to d4mlpa1
14. Domains for 7d19:
  1. Domain d7d19a1: 7d19 A:2-205 [398717]
    Other proteins in same PDB: d7d19a2, d7d19b2
    automated match to d4mlpa1
    complexed with goc
  2. Domain d7d19b1: 7d19 B:2-205 [398767]
    Other proteins in same PDB: d7d19a2, d7d19b2
    automated match to d4mlpa1
    complexed with goc
15. Domain for 7d1c:
  - Domain d7d1ca1: 7d1c A:2-205 [398727]
    Other proteins in same PDB: d7d1ca2
    automated match to d4mlpa1
    complexed with gof
16. Domains for 7dli:
  1. Domain d7dlia1: 7dli A:3-205 [405086]
    Other proteins in same PDB: d7dlia2, d7dlib2, d7dlic2
    automated match to d4mlpa1
    complexed with edo, h8x
  2. Domain d7dlib1: 7dli B:3-205 [405029]
    Other proteins in same PDB: d7dlia2, d7dlib2, d7dlic2
    automated match to d4mlpa1
    complexed with edo, h8x
  3. Domain d7dlic1: 7dli C:2-205 [405036]
    Other proteins in same PDB: d7dlia2, d7dlib2, d7dlic2
    automated match to d4mlpa1
    complexed with edo, h8x
17. Domains for 7ej9:
  1. Domain d7ej9a1: 7ej9 A:21-223 [405259]
    Other proteins in same PDB: d7ej9a2, d7ej9b2
    automated match to d4mlpa1
    complexed with dyx
  2. Domain d7ej9b1: 7ej9 B:21-223 [405264]
    Other proteins in same PDB: d7ej9a2, d7ej9b2
    automated match to d4mlpa1
    complexed with dyx

More info for Protein automated matches from c.28.1.0: automated matches

Timeline for Protein automated matches from c.28.1.0: automated matches:

Protein automated matches from c.28.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from c.28.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from c.28.1.0: automated matches appears in the current release, SCOPe 2.08