Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2949054Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2955026Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families) (S)
    each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
  5. 2955165Family d.58.31.0: automated matches [227271] (1 protein)
    not a true family
  6. 2955166Protein automated matches [227074] (6 species)
    not a true protein

Species:

  1. 2955167Candidatus ethanoperedens [TaxId:2766897] [420101] (2 PDB entries)
    1. Domains for 7b1s:
      1. 2955168Domain d7b1sb1: 7b1s B:2-212 [417617]
        Other proteins in same PDB: d7b1sb2, d7b1se2
        automated match to d7nkgb1
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mgn, mhs, mn, smc, tp7, trs, usn, uut
      2. 2955169Domain d7b1sc_: 7b1s C: [417619]
        Other proteins in same PDB: d7b1sb2, d7b1se2
        automated match to d5n1qc_
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mgn, mhs, mn, smc, tp7, trs, usn, uut
      3. 2955170Domain d7b1se1: 7b1s E:2-212 [417620]
        Other proteins in same PDB: d7b1sb2, d7b1se2
        automated match to d7nkgb1
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mgn, mhs, mn, smc, tp7, trs, usn, uut
      4. 2955171Domain d7b1sf_: 7b1s F: [417622]
        Other proteins in same PDB: d7b1sb2, d7b1se2
        automated match to d5n1qc_
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mgn, mhs, mn, smc, tp7, trs, usn, uut
    2. Domains for 7b2c:
      1. 2955172Domain d7b2cb1: 7b2c B:2-212 [417623]
        Other proteins in same PDB: d7b2cb2, d7b2ce2
        automated match to d7nkgb1
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mg, mgn, na, smc, tp7, trs, usn, uwt, xe
      2. 2955173Domain d7b2cc_: 7b2c C: [417625]
        Other proteins in same PDB: d7b2cb2, d7b2ce2
        automated match to d5n1qc_
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mg, mgn, na, smc, tp7, trs, usn, uwt, xe
      3. 2955174Domain d7b2ce1: 7b2c E:2-212 [417626]
        Other proteins in same PDB: d7b2cb2, d7b2ce2
        automated match to d7nkgb1
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mg, mgn, na, smc, tp7, trs, usn, uwt, xe
      4. 2955175Domain d7b2cf_: 7b2c F: [417628]
        Other proteins in same PDB: d7b2cb2, d7b2ce2
        automated match to d5n1qc_
        complexed with agm, cl, com, gl3, gol, hic, i2m, k, mg, mgn, na, smc, tp7, trs, usn, uwt, xe
  2. 2955176Methanothermobacter marburgensis [TaxId:145263] [226795] (1 PDB entry)
  3. 2955181Methanothermococcus thermolithotrophicus [TaxId:523845] [335401] (1 PDB entry)
  4. 2955186Methanotorris formicicus [TaxId:647171] [335373] (2 PDB entries)
    1. Domains for 5n28:
      1. 2955187Domain d5n28b1: 5n28 B:2-188 [335434]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1hbnb2
        complexed with com, f43, k, tp7
      2. 2955188Domain d5n28c_: 5n28 C: [335384]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1e6yc_
        complexed with com, f43, k, tp7
      3. 2955189Domain d5n28e1: 5n28 E:2-188 [335415]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1hbnb2
        complexed with com, f43, k, tp7
      4. 2955190Domain d5n28f_: 5n28 F: [335374]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1e6yc_
        complexed with com, f43, k, tp7
    2. Domains for 5n2a:
      1. 2955191Domain d5n2ab1: 5n2a B:2-188 [335559]
        Other proteins in same PDB: d5n2ab2
        automated match to d1hbnb2
        complexed with br, com, f43, k, tp7
      2. 2955192Domain d5n2ac_: 5n2a C: [335393]
        Other proteins in same PDB: d5n2ab2
        automated match to d1e6yc_
        complexed with br, com, f43, k, tp7
  5. 2955193Methermicoccus shengliensis [TaxId:1122233] [405827] (1 PDB entry)
  6. 2955202Uncultured archaeon [TaxId:115547] [226262] (1 PDB entry)

More info for Protein automated matches from d.58.31.0: automated matches

Timeline for Protein automated matches from d.58.31.0: automated matches: