Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1420571Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 1420831Superfamily d.79.2: Tubulin C-terminal domain-like [55307] (2 families) (S)
  5. 1420832Family d.79.2.1: Tubulin, C-terminal domain [55308] (4 proteins)
  6. 1420939Protein automated matches [227071] (2 species)
    not a true protein

Species:

  1. 1420940Cow (Bos taurus) [TaxId:9913] [226565] (11 PDB entries)
    1. Domains for 4i4t:
      1. 1420945Domain d4i4ta2: 4i4t A:246-450 [222906]
        Other proteins in same PDB: d4i4ta1, d4i4tb1, d4i4tc1, d4i4td1, d4i4te_
        automated match to d1tuba2
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
      2. 1420946Domain d4i4tb2: 4i4t B:246-438 [222908]
        Other proteins in same PDB: d4i4ta1, d4i4tb1, d4i4tc1, d4i4td1, d4i4te_
        automated match to d1jffb2
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
      3. 1420947Domain d4i4tc2: 4i4t C:246-440 [222910]
        Other proteins in same PDB: d4i4ta1, d4i4tb1, d4i4tc1, d4i4td1, d4i4te_
        automated match to d1tuba2
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
      4. 1420948Domain d4i4td2: 4i4t D:246-441 [222912]
        Other proteins in same PDB: d4i4ta1, d4i4tb1, d4i4tc1, d4i4td1, d4i4te_
        automated match to d1jffb2
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
    2. Domains for 4i50:
      1. 1420953Domain d4i50a2: 4i50 A:246-438 [222915]
        Other proteins in same PDB: d4i50a1, d4i50b1, d4i50c1, d4i50d1, d4i50e_
        automated match to d1z2ba2
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
      2. 1420954Domain d4i50b2: 4i50 B:246-440 [222917]
        Other proteins in same PDB: d4i50a1, d4i50b1, d4i50c1, d4i50d1, d4i50e_
        automated match to d1jffb2
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
      3. 1420955Domain d4i50c2: 4i50 C:246-440 [222919]
        Other proteins in same PDB: d4i50a1, d4i50b1, d4i50c1, d4i50d1, d4i50e_
        automated match to d1z2ba2
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
      4. 1420956Domain d4i50d2: 4i50 D:246-441 [222921]
        Other proteins in same PDB: d4i50a1, d4i50b1, d4i50c1, d4i50d1, d4i50e_
        automated match to d1jffb2
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
    3. Domains for 4i55:
      1. 1420949Domain d4i55a2: 4i55 A:246-450 [234808]
        Other proteins in same PDB: d4i55a1, d4i55b1, d4i55c1, d4i55d1, d4i55e_
        automated match to d4i4ta2
        complexed with acp, ca, cl, gdp, gtp, mes, mg
      2. 1420950Domain d4i55b2: 4i55 B:246-438 [222924]
        Other proteins in same PDB: d4i55a1, d4i55b1, d4i55c1, d4i55d1, d4i55e_
        automated match to d1jffb2
        complexed with acp, ca, cl, gdp, gtp, mes, mg
      3. 1420951Domain d4i55c2: 4i55 C:246-440 [222926]
        Other proteins in same PDB: d4i55a1, d4i55b1, d4i55c1, d4i55d1, d4i55e_
        automated match to d1tuba2
        complexed with acp, ca, cl, gdp, gtp, mes, mg
      4. 1420952Domain d4i55d2: 4i55 D:246-441 [222928]
        Other proteins in same PDB: d4i55a1, d4i55b1, d4i55c1, d4i55d1, d4i55e_
        automated match to d1jffb2
        complexed with acp, ca, cl, gdp, gtp, mes, mg
    4. Domains for 4ihj:
      1. 1420941Domain d4ihja2: 4ihj A:246-450 [202611]
        Other proteins in same PDB: d4ihja1, d4ihjb1, d4ihjc1, d4ihjd1, d4ihje_
        automated match to d1tuba2
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
      2. 1420942Domain d4ihjb2: 4ihj B:246-438 [202613]
        Other proteins in same PDB: d4ihja1, d4ihjb1, d4ihjc1, d4ihjd1, d4ihje_
        automated match to d1jffb2
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
      3. 1420943Domain d4ihjc2: 4ihj C:246-440 [202615]
        Other proteins in same PDB: d4ihja1, d4ihjb1, d4ihjc1, d4ihjd1, d4ihje_
        automated match to d1tuba2
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
      4. 1420944Domain d4ihjd2: 4ihj D:246-441 [202617]
        Other proteins in same PDB: d4ihja1, d4ihjb1, d4ihjc1, d4ihjd1, d4ihje_
        automated match to d1jffb2
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
    5. Domains for 4iij:
      1. 1420965Domain d4iija2: 4iij A:246-437 [223191]
        Other proteins in same PDB: d4iija1, d4iijb1, d4iijc1, d4iijd1, d4iije_
        automated match to d1z2ba2
        complexed with ca, cl, gdp, gtp, mes, mg
      2. 1420966Domain d4iijb2: 4iij B:246-438 [223193]
        Other proteins in same PDB: d4iija1, d4iijb1, d4iijc1, d4iijd1, d4iije_
        automated match to d1jffb2
        complexed with ca, cl, gdp, gtp, mes, mg
      3. 1420967Domain d4iijc2: 4iij C:246-440 [223195]
        Other proteins in same PDB: d4iija1, d4iijb1, d4iijc1, d4iijd1, d4iije_
        automated match to d1z2ba2
        complexed with ca, cl, gdp, gtp, mes, mg
      4. 1420968Domain d4iijd2: 4iij D:246-441 [223197]
        Other proteins in same PDB: d4iija1, d4iijb1, d4iijc1, d4iijd1, d4iije_
        automated match to d1jffb2
        complexed with ca, cl, gdp, gtp, mes, mg
    6. Domains for 4o2a:
      1. 1420981Domain d4o2aa2: 4o2a A:246-437 [237351]
        Other proteins in same PDB: d4o2aa1, d4o2ab1, d4o2ac1, d4o2ad1, d4o2ae_
        automated match to d3ryca2
        complexed with 2rr, adp, ca, cl, gdp, gol, gtp, imd, mes, mg
      2. 1420982Domain d4o2ab2: 4o2a B:246-438 [237355]
        Other proteins in same PDB: d4o2aa1, d4o2ab1, d4o2ac1, d4o2ad1, d4o2ae_
        automated match to d4i4td2
        complexed with 2rr, adp, ca, cl, gdp, gol, gtp, imd, mes, mg
      3. 1420983Domain d4o2ac2: 4o2a C:246-440 [237348]
        Other proteins in same PDB: d4o2aa1, d4o2ab1, d4o2ac1, d4o2ad1, d4o2ae_
        automated match to d3ryha2
        complexed with 2rr, adp, ca, cl, gdp, gol, gtp, imd, mes, mg
      4. 1420984Domain d4o2ad2: 4o2a D:246-441 [237357]
        Other proteins in same PDB: d4o2aa1, d4o2ab1, d4o2ac1, d4o2ad1, d4o2ae_
        automated match to d4i4td2
    7. Domains for 4o2b:
      1. 1420969Domain d4o2ba2: 4o2b A:246-439 [237345]
        Other proteins in same PDB: d4o2ba1, d4o2bb1, d4o2bc1, d4o2bd1, d4o2be_
        automated match to d3rycc2
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
      2. 1420970Domain d4o2bb2: 4o2b B:246-438 [237350]
        Other proteins in same PDB: d4o2ba1, d4o2bb1, d4o2bc1, d4o2bd1, d4o2be_
        automated match to d4i4td2
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
      3. 1420971Domain d4o2bc2: 4o2b C:246-440 [237344]
        Other proteins in same PDB: d4o2ba1, d4o2bb1, d4o2bc1, d4o2bd1, d4o2be_
        automated match to d3ryha2
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
      4. 1420972Domain d4o2bd2: 4o2b D:246-441 [237353]
        Other proteins in same PDB: d4o2ba1, d4o2bb1, d4o2bc1, d4o2bd1, d4o2be_
        automated match to d4i4td2
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
    8. Domains for 4o4h:
      1. 1420957Domain d4o4ha2: 4o4h A:246-439 [237360]
        Other proteins in same PDB: d4o4ha1, d4o4hb1, d4o4hc1, d4o4hd1, d4o4he_
        automated match to d3rycc2
        complexed with acp, ca, gdp, gol, gtp, llm, mg
      2. 1420958Domain d4o4hb2: 4o4h B:246-440 [237369]
        Other proteins in same PDB: d4o4ha1, d4o4hb1, d4o4hc1, d4o4hd1, d4o4he_
        automated match to d4i4td2
        complexed with acp, ca, gdp, gol, gtp, llm, mg
      3. 1420959Domain d4o4hc2: 4o4h C:246-440 [237365]
        Other proteins in same PDB: d4o4ha1, d4o4hb1, d4o4hc1, d4o4hd1, d4o4he_
        automated match to d3ryha2
        complexed with acp, ca, gdp, gol, gtp, llm, mg
      4. 1420960Domain d4o4hd2: 4o4h D:246-441 [237363]
        Other proteins in same PDB: d4o4ha1, d4o4hb1, d4o4hc1, d4o4hd1, d4o4he_
        automated match to d4i4td2
        complexed with acp, ca, gdp, gol, gtp, llm, mg
    9. Domains for 4o4i:
      1. 1420977Domain d4o4ia2: 4o4i A:246-437 [237697]
        Other proteins in same PDB: d4o4ia1, d4o4ib1, d4o4ic1, d4o4id1, d4o4ie_
        automated match to d3ryca2
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
      2. 1420978Domain d4o4ib2: 4o4i B:246-438 [237695]
        Other proteins in same PDB: d4o4ia1, d4o4ib1, d4o4ic1, d4o4id1, d4o4ie_
        automated match to d4i4td2
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
      3. 1420979Domain d4o4ic2: 4o4i C:246-440 [237701]
        Other proteins in same PDB: d4o4ia1, d4o4ib1, d4o4ic1, d4o4id1, d4o4ie_
        automated match to d3ryha2
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
      4. 1420980Domain d4o4id2: 4o4i D:246-441 [237699]
        Other proteins in same PDB: d4o4ia1, d4o4ib1, d4o4ic1, d4o4id1, d4o4ie_
        automated match to d4i4td2
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
    10. Domains for 4o4j:
      1. 1420973Domain d4o4ja2: 4o4j A:246-439 [238044]
        Other proteins in same PDB: d4o4ja1, d4o4jb1, d4o4jc1, d4o4jd1, d4o4je_
        automated match to d3rycc2
        complexed with acp, ca, gdp, gol, gtp, mg, pou
      2. 1420974Domain d4o4jb2: 4o4j B:246-438 [238047]
        Other proteins in same PDB: d4o4ja1, d4o4jb1, d4o4jc1, d4o4jd1, d4o4je_
        automated match to d4i4td2
        complexed with acp, ca, gdp, gol, gtp, mg, pou
      3. 1420975Domain d4o4jc2: 4o4j C:246-440 [238049]
        Other proteins in same PDB: d4o4ja1, d4o4jb1, d4o4jc1, d4o4jd1, d4o4je_
        automated match to d3ryha2
        complexed with acp, ca, gdp, gol, gtp, mg, pou
      4. 1420976Domain d4o4jd2: 4o4j D:246-441 [238051]
        Other proteins in same PDB: d4o4ja1, d4o4jb1, d4o4jc1, d4o4jd1, d4o4je_
        automated match to d4i4td2
        complexed with acp, ca, gdp, gol, gtp, mg, pou
    11. Domains for 4o4l:
      1. 1420961Domain d4o4la2: 4o4l A:246-439 [238036]
        Other proteins in same PDB: d4o4la1, d4o4lb1, d4o4lc1, d4o4ld1, d4o4le_
        automated match to d3rycc2
        complexed with ca, ep, gdp, gtp, mes, mg, pou
      2. 1420962Domain d4o4lb2: 4o4l B:246-438 [238038]
        Other proteins in same PDB: d4o4la1, d4o4lb1, d4o4lc1, d4o4ld1, d4o4le_
        automated match to d4i4td2
        complexed with ca, ep, gdp, gtp, mes, mg, pou
      3. 1420963Domain d4o4lc2: 4o4l C:246-440 [238040]
        Other proteins in same PDB: d4o4la1, d4o4lb1, d4o4lc1, d4o4ld1, d4o4le_
        automated match to d3ryha2
        complexed with ca, ep, gdp, gtp, mes, mg, pou
      4. 1420964Domain d4o4ld2: 4o4l D:246-441 [238042]
        Other proteins in same PDB: d4o4la1, d4o4lb1, d4o4lc1, d4o4ld1, d4o4le_
        automated match to d4i4td2
        complexed with ca, ep, gdp, gtp, mes, mg, pou
  2. 1420985Sheep (Ovis aries) [TaxId:9940] [226224] (7 PDB entries)
    1. Domains for 3ryc:
      1. 1420990Domain d3ryca2: 3ryc A:246-438 [200538]
        Other proteins in same PDB: d3ryca1, d3rycb1, d3rycc1, d3rycd1, d3ryce_
        automated match to d1z2ba2
        complexed with gdp, gtp, mg, so4
      2. 1420991Domain d3rycb2: 3ryc B:246-442 [200540]
        Other proteins in same PDB: d3ryca1, d3rycb1, d3rycc1, d3rycd1, d3ryce_
        automated match to d1z2bb2
        complexed with gdp, gtp, mg, so4
      3. 1420992Domain d3rycc2: 3ryc C:246-439 [200542]
        Other proteins in same PDB: d3ryca1, d3rycb1, d3rycc1, d3rycd1, d3ryce_
        automated match to d1z2ba2
        complexed with gdp, gtp, mg, so4
      4. 1420993Domain d3rycd2: 3ryc D:246-441 [200544]
        Other proteins in same PDB: d3ryca1, d3rycb1, d3rycc1, d3rycd1, d3ryce_
        automated match to d1z2bb2
        complexed with gdp, gtp, mg, so4
    2. Domains for 3ryf:
      1. 1420998Domain d3ryfa2: 3ryf A:246-438 [200546]
        Other proteins in same PDB: d3ryfa1, d3ryfb1, d3ryfc1, d3ryfd1, d3ryfe_
        automated match to d1z2ba2
        complexed with gtp, mg, so4
      2. 1420999Domain d3ryfb2: 3ryf B:246-442 [200548]
        Other proteins in same PDB: d3ryfa1, d3ryfb1, d3ryfc1, d3ryfd1, d3ryfe_
        automated match to d1z2bb2
        complexed with gtp, mg, so4
      3. 1421000Domain d3ryfc2: 3ryf C:246-439 [200550]
        Other proteins in same PDB: d3ryfa1, d3ryfb1, d3ryfc1, d3ryfd1, d3ryfe_
        automated match to d1z2ba2
        complexed with gtp, mg, so4
      4. 1421001Domain d3ryfd2: 3ryf D:246-441 [200552]
        Other proteins in same PDB: d3ryfa1, d3ryfb1, d3ryfc1, d3ryfd1, d3ryfe_
        automated match to d1z2bb2
        complexed with gtp, mg, so4
    3. Domains for 3ryh:
      1. 1421004Domain d3ryha2: 3ryh A:246-441 [200554]
        Other proteins in same PDB: d3ryha1, d3ryhb1, d3ryhc1, d3ryhd1, d3ryhe_
        automated match to d1z2ba2
        complexed with g2p, gtp, mg, so4
      2. 1421005Domain d3ryhb2: 3ryh B:246-442 [200556]
        Other proteins in same PDB: d3ryha1, d3ryhb1, d3ryhc1, d3ryhd1, d3ryhe_
        automated match to d1z2bb2
        complexed with g2p, gtp, mg, so4
      3. 1421006Domain d3ryhc2: 3ryh C:246-440 [200558]
        Other proteins in same PDB: d3ryha1, d3ryhb1, d3ryhc1, d3ryhd1, d3ryhe_
        automated match to d1z2ba2
        complexed with g2p, gtp, mg, so4
      4. 1421007Domain d3ryhd2: 3ryh D:246-441 [200560]
        Other proteins in same PDB: d3ryha1, d3ryhb1, d3ryhc1, d3ryhd1, d3ryhe_
        automated match to d1z2bb2
        complexed with g2p, gtp, mg, so4
    4. Domains for 3ryi:
      1. 1420994Domain d3ryia2: 3ryi A:246-438 [200562]
        Other proteins in same PDB: d3ryia1, d3ryib1, d3ryic1, d3ryid1, d3ryie_
        automated match to d1z2ba2
        complexed with gdp, gtp, mg, so4
      2. 1420995Domain d3ryib2: 3ryi B:246-441 [200564]
        Other proteins in same PDB: d3ryia1, d3ryib1, d3ryic1, d3ryid1, d3ryie_
        automated match to d1z2bb2
        complexed with gdp, gtp, mg, so4
      3. 1420996Domain d3ryic2: 3ryi C:246-438 [200566]
        Other proteins in same PDB: d3ryia1, d3ryib1, d3ryic1, d3ryid1, d3ryie_
        automated match to d1z2ba2
        complexed with gdp, gtp, mg, so4
      4. 1420997Domain d3ryid2: 3ryi D:246-441 [200568]
        Other proteins in same PDB: d3ryia1, d3ryib1, d3ryic1, d3ryid1, d3ryie_
        automated match to d1z2bb2
        complexed with gdp, gtp, mg, so4
    5. Domains for 3ut5:
      1. 1421008Domain d3ut5a2: 3ut5 A:246-440 [201112]
        Other proteins in same PDB: d3ut5a1, d3ut5b1, d3ut5c1, d3ut5d1, d3ut5e_
        automated match to d1z2ba2
        complexed with gdp, gtp, loc, mg, so4
      2. 1421009Domain d3ut5b2: 3ut5 B:246-442 [201114]
        Other proteins in same PDB: d3ut5a1, d3ut5b1, d3ut5c1, d3ut5d1, d3ut5e_
        automated match to d1z2bb2
        complexed with gdp, gtp, loc, mg, so4
      3. 1421010Domain d3ut5c2: 3ut5 C:246-440 [201116]
        Other proteins in same PDB: d3ut5a1, d3ut5b1, d3ut5c1, d3ut5d1, d3ut5e_
        automated match to d1z2ba2
        complexed with gdp, gtp, loc, mg, so4
      4. 1421011Domain d3ut5d2: 3ut5 D:246-442 [201118]
        Other proteins in same PDB: d3ut5a1, d3ut5b1, d3ut5c1, d3ut5d1, d3ut5e_
        automated match to d1z2bb2
        complexed with gdp, gtp, loc, mg, so4
    6. Domains for 4drx:
      1. 1420986Domain d4drxa2: 4drx A:246-437 [219980]
        Other proteins in same PDB: d4drxa1, d4drxb1, d4drxc1, d4drxd1, d4drxe_, d4drxf_
        automated match to d1tuba2
        complexed with gtp, mg
      2. 1420987Domain d4drxb2: 4drx B:246-441 [219982]
        Other proteins in same PDB: d4drxa1, d4drxb1, d4drxc1, d4drxd1, d4drxe_, d4drxf_
        automated match to d1z2bb2
        complexed with gtp, mg
      3. 1420988Domain d4drxc2: 4drx C:246-437 [219984]
        Other proteins in same PDB: d4drxa1, d4drxb1, d4drxc1, d4drxd1, d4drxe_, d4drxf_
        automated match to d1tuba2
        complexed with gtp, mg
      4. 1420989Domain d4drxd2: 4drx D:246-441 [219986]
        Other proteins in same PDB: d4drxa1, d4drxb1, d4drxc1, d4drxd1, d4drxe_, d4drxf_
        automated match to d1z2bb2
        complexed with gtp, mg
    7. Domains for 4f6r:
      1. 1421002Domain d4f6ra2: 4f6r A:246-437 [202008]
        Other proteins in same PDB: d4f6ra1, d4f6rb1, d4f6rd_
        automated match to d1z2ba2
        complexed with gdp, gtp, mes, mg, so4
      2. 1421003Domain d4f6rb2: 4f6r B:246-441 [202010]
        Other proteins in same PDB: d4f6ra1, d4f6rb1, d4f6rd_
        automated match to d1z2bb2
        complexed with gdp, gtp, mes, mg, so4

More info for Protein automated matches from d.79.2.1: Tubulin, C-terminal domain

Timeline for Protein automated matches from d.79.2.1: Tubulin, C-terminal domain: