SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)

Fold f.5: Outer membrane efflux proteins (OEP) [56953] (1 superfamily)
subunit fold contains tandem repeat of alpha-beta hairpin-alpha(2) motif
trimeric fold contains barrel (n=12, S=18) formed by beta-hairpins, two from each subunit, and a bundle of helices with a channel running through it

Superfamily f.5.1: Outer membrane efflux proteins (OEP) [56954] (2 families)
Family f.5.1.0: automated matches [227266] (1 protein)
not a true family
Protein automated matches [227059] (5 species)
not a true protein

Species:

Burkholderia mallei [TaxId:243160] [375238] (1 PDB entry)
- Domain for 6u94:
  - Domain d6u94a_: 6u94 A: [375239]
    automated match to d5azsc_
    complexed with gol
Escherichia coli K-12 [TaxId:83333] [228347] (1 PDB entry)
- Domains for 4k34:
  1. Domain d4k34a1: 4k34 A:32-440 [228348]
    Other proteins in same PDB: d4k34a2
    automated match to d3pika_
  2. Domain d4k34b_: 4k34 B: [235079]
    Other proteins in same PDB: d4k34a2
    automated match to d4k34a_
Escherichia coli [TaxId:562] [226068] (3 PDB entries)
1. Domain for 3pik:
  - Domain d3pika_: 3pik A: [214805]
    automated match to d1wp1a_
    complexed with so4, unl
2. Domain for 4k7k:
  - Domain d4k7ka1: 4k7k A:32-440 [228349]
    Other proteins in same PDB: d4k7ka2
    automated match to d3pika_
3. Domain for 4k7r:
  - Domain d4k7ra_: 4k7r A: [228350]
    automated match to d3pika_
    complexed with 3pk
Pseudomonas aeruginosa [TaxId:208964] [318062] (5 PDB entries)
1. Domain for 5azo:
  - Domain d5azoa_: 5azo A: [318187]
    automated match to d1wp1b_
2. Domains for 5azp:
  1. Domain d5azpa_: 5azp A: [318133]
    Other proteins in same PDB: d5azpb2
    automated match to d1wp1b_
    complexed with 3pk, act, bog, fmt, gol, na, oya
  2. Domain d5azpb1: 5azp B:1-447 [318065]
    Other proteins in same PDB: d5azpb2
    automated match to d1wp1b_
    complexed with 3pk, act, bog, fmt, gol, na, oya
  3. Domain d5azpc_: 5azp C: [318104]
    Other proteins in same PDB: d5azpb2
    automated match to d1wp1b_
    complexed with 3pk, act, bog, fmt, gol, na, oya
3. Domains for 5azs:
  1. Domain d5azsa_: 5azs A: [318205]
    automated match to d1wp1a_
  2. Domain d5azsb_: 5azs B: [318063]
    automated match to d1wp1a_
  3. Domain d5azsc_: 5azs C: [318143]
    automated match to d1wp1a_
4. Domains for 5iuy:
  1. Domain d5iuya_: 5iuy A: [319334]
    Other proteins in same PDB: d5iuyc2
    automated match to d3d5ka_
    complexed with bog, cl, fmt, na, plm
  2. Domain d5iuyb_: 5iuy B: [319367]
    Other proteins in same PDB: d5iuyc2
    automated match to d3d5ka_
    complexed with bog, cl, fmt, na, plm
  3. Domain d5iuyc1: 5iuy C:1-447 [319346]
    Other proteins in same PDB: d5iuyc2
    automated match to d3d5ka_
    complexed with bog, cl, fmt, na, plm
5. Domains for 5nsw:
  1. Domain d5nswa_: 5nsw A: [339260]
    Other proteins in same PDB: d5nswc2
    automated match to d3d5ka_
    complexed with bog, na, ni, plm, xe
  2. Domain d5nswb_: 5nsw B: [339360]
    Other proteins in same PDB: d5nswc2
    automated match to d3d5ka_
    complexed with bog, na, ni, plm, xe
  3. Domain d5nswc1: 5nsw C:1-447 [339226]
    Other proteins in same PDB: d5nswc2
    automated match to d3d5ka_
    complexed with bog, na, ni, plm, xe
Vibrio cholerae [TaxId:666] [254977] (1 PDB entry)
- Domain for 1yc9:
  - Domain d1yc9a_: 1yc9 A: [241011]
    automated match to d4k7ka_
    complexed with bog, hg

More info for Protein automated matches from f.5.1.0: automated matches

Timeline for Protein automated matches from f.5.1.0: automated matches:

Protein automated matches from f.5.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from f.5.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from f.5.1.0: automated matches appears in the current release, SCOPe 2.08