Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2626587Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)
  3. 2628446Fold f.10: Viral glycoprotein, central and dimerisation domains [56982] (1 superfamily)
    2 intertwined domains; all-beta and alpha+beta
  4. 2628447Superfamily f.10.1: Viral glycoprotein, central and dimerisation domains [56983] (2 families) (S)
  5. 2628492Family f.10.1.0: automated matches [227258] (1 protein)
    not a true family
  6. 2628493Protein automated matches [227047] (11 species)
    not a true protein

Species:

  1. 2628494Chikungunya virus [TaxId:37124] [226026] (2 PDB entries)
    1. Domain for 3n43:
    2. Domain for 3n44:
  2. 2628497Dengue virus 1 [TaxId:11059] [226543] (2 PDB entries)
    1. Domains for 4gsx:
      1. 2628498Domain d4gsxa1: 4gsx A:2-297 [222123]
        Other proteins in same PDB: d4gsxa2, d4gsxb2
        automated match to d1urza2
        complexed with cd, cl, nag
      2. 2628499Domain d4gsxb1: 4gsx B:2-297 [222125]
        Other proteins in same PDB: d4gsxa2, d4gsxb2
        automated match to d1urza2
        complexed with cd, cl, nag
    2. Domains for 4gt0:
      1. 2628500Domain d4gt0a1: 4gt0 A:2-297 [222131]
        Other proteins in same PDB: d4gt0a2, d4gt0b2
        automated match to d1urza2
        complexed with cd, cl, nag
      2. 2628501Domain d4gt0b1: 4gt0 B:2-297 [222133]
        Other proteins in same PDB: d4gt0a2, d4gt0b2
        automated match to d1urza2
        complexed with cd, cl, nag
  3. 2628502Dengue virus 2 [TaxId:11060] [268948] (2 PDB entries)
    1. Domains for 4uta:
      1. 2628503Domain d4utaa1: 4uta A:1-297 [268956]
        Other proteins in same PDB: d4utaa2, d4utaa3, d4utab2, d4utab3, d4utal1, d4utal2, d4utam1, d4utam2
        automated match to d4gsxa1
      2. 2628504Domain d4utab1: 4uta B:1-297 [268958]
        Other proteins in same PDB: d4utaa2, d4utaa3, d4utab2, d4utab3, d4utal1, d4utal2, d4utam1, d4utam2
        automated match to d4gsxa1
    2. Domains for 4utc:
      1. 2628505Domain d4utca1: 4utc A:1-297 [268952]
        Other proteins in same PDB: d4utca2, d4utca3, d4utcb2, d4utcb3
        automated match to d4gsxa1
      2. 2628506Domain d4utcb1: 4utc B:1-297 [268949]
        Other proteins in same PDB: d4utca2, d4utca3, d4utcb2, d4utcb3
        automated match to d4gsxa1
  4. 2628507Japanese encephalitis virus (strain sa-14) [TaxId:11073] [352507] (2 PDB entries)
    1. Domain for 5mv1:
    2. Domain for 5mv2:
  5. 2628510Japanese encephalitis virus [TaxId:11072] [226036] (1 PDB entry)
  6. 2628512Tick-borne encephalitis virus [TaxId:11084] [385818] (1 PDB entry)
  7. 2628514Usutu virus [TaxId:64286] [361607] (1 PDB entry)
  8. 2628516West Nile virus [TaxId:11082] [255208] (2 PDB entries)
    1. Domain for 2hg0:
    2. Domain for 2i69:
  9. 2628519Yellow fever virus (strain 17d vaccine) [TaxId:11090] [364871] (3 PDB entries)
    1. Domains for 6iw1:
      1. 2628528Domain d6iw1a1: 6iw1 A:3-295 [364979]
        Other proteins in same PDB: d6iw1a2, d6iw1b2, d6iw1c2
        automated match to d3p54a1
      2. 2628529Domain d6iw1b1: 6iw1 B:3-295 [364912]
        Other proteins in same PDB: d6iw1a2, d6iw1b2, d6iw1c2
        automated match to d3p54a1
      3. 2628530Domain d6iw1c1: 6iw1 C:3-295 [364906]
        Other proteins in same PDB: d6iw1a2, d6iw1b2, d6iw1c2
        automated match to d3p54a1
    2. Domains for 6iw2:
      1. 2628522Domain d6iw2a1: 6iw2 A:1-295 [364990]
        Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
        automated match to d3p54a1
      2. 2628523Domain d6iw2d1: 6iw2 D:1-295 [364982]
        Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
        automated match to d3p54a1
      3. 2628524Domain d6iw2g1: 6iw2 G:1-295 [364872]
        Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
        automated match to d3p54a1
      4. 2628525Domain d6iw2j1: 6iw2 J:1-295 [364910]
        Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
        automated match to d3p54a1
      5. 2628526Domain d6iw2m1: 6iw2 M:1-295 [364917]
        Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
        automated match to d3p54a1
      6. 2628527Domain d6iw2p1: 6iw2 P:1-295 [364927]
        Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
        automated match to d3p54a1
    3. Domains for 6iw4:
      1. 2628520Domain d6iw4a1: 6iw4 A:1-295 [364945]
        Other proteins in same PDB: d6iw4a2, d6iw4b2
        automated match to d3p54a1
      2. 2628521Domain d6iw4b1: 6iw4 B:1-295 [364883]
        Other proteins in same PDB: d6iw4a2, d6iw4b2
        automated match to d3p54a1
  10. 2628531Yellow fever virus [TaxId:11089] [359531] (3 PDB entries)
    1. Domains for 6epk:
      1. 2628537Domain d6epka1: 6epk A:1-295 [359595]
        Other proteins in same PDB: d6epka2, d6epka3, d6epkd2, d6epkd3
        automated match to d2i69a1
        complexed with bma, fuc, gol, man, nag, so4
      2. 2628538Domain d6epkd1: 6epk D:1-295 [359532]
        Other proteins in same PDB: d6epka2, d6epka3, d6epkd2, d6epkd3
        automated match to d2i69a1
        complexed with bma, fuc, gol, man, nag, so4
    2. Domain for 6ivz:
    3. Domains for 6iw5:
      1. 2628533Domain d6iw5a1: 6iw5 A:1-295 [364942]
        Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
        automated match to d3p54a1
      2. 2628534Domain d6iw5b1: 6iw5 B:1-295 [364842]
        Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
        automated match to d3p54a1
      3. 2628535Domain d6iw5c1: 6iw5 C:1-295 [364892]
        Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
        automated match to d3p54a1
      4. 2628536Domain d6iw5d1: 6iw5 D:1-295 [364900]
        Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
        automated match to d3p54a1
  11. 2628539Zika virus [TaxId:64320] [317278] (7 PDB entries)
    1. Domains for 5gzn:
      1. 2628550Domain d5gzna1: 5gzn A:1-303 [327657]
        Other proteins in same PDB: d5gzna2, d5gznb2, d5gznd1, d5gznd2, d5gznl1, d5gznl2
        automated match to d4gsxa1
      2. 2628551Domain d5gznb1: 5gzn B:1-303 [327600]
        Other proteins in same PDB: d5gzna2, d5gznb2, d5gznd1, d5gznd2, d5gznl1, d5gznl2
        automated match to d4gsxa1
    2. Domains for 5gzo:
      1. 2628548Domain d5gzoa1: 5gzo A:1-303 [328459]
        Other proteins in same PDB: d5gzoa2, d5gzob2, d5gzod1, d5gzod2, d5gzol1, d5gzol2
        automated match to d4gsxa1
      2. 2628549Domain d5gzob1: 5gzo B:1-303 [328585]
        Other proteins in same PDB: d5gzoa2, d5gzob2, d5gzod1, d5gzod2, d5gzol1, d5gzol2
        automated match to d4gsxa1
    3. Domain for 5jhl:
    4. Domains for 5jhm:
      1. 2628540Domain d5jhma1: 5jhm A:1-303 [317287]
        Other proteins in same PDB: d5jhma2, d5jhmb2
        automated match to d4gsxa1
      2. 2628541Domain d5jhmb1: 5jhm B:1-303 [317317]
        Other proteins in same PDB: d5jhma2, d5jhmb2
        automated match to d4gsxa1
    5. Domains for 5lbv:
      1. 2628542Domain d5lbva1: 5lbv A:1-303 [319446]
        Other proteins in same PDB: d5lbva2, d5lbvb2
        automated match to d4gsxa1
        complexed with bma, fuc, man, na, nag
      2. 2628543Domain d5lbvb1: 5lbv B:1-303 [319380]
        Other proteins in same PDB: d5lbva2, d5lbvb2
        automated match to d4gsxa1
        complexed with bma, fuc, man, na, nag
    6. Domains for 7bpk:
      1. 2628546Domain d7bpka1: 7bpk A:1-303 [401736]
        Other proteins in same PDB: d7bpka2, d7bpka3, d7bpkb2, d7bpkb3, d7bpkc_, d7bpkd_, d7bpkh_, d7bpkl_
        automated match to d4gsxa1
        mutant
      2. 2628547Domain d7bpkb1: 7bpk B:1-303 [401699]
        Other proteins in same PDB: d7bpka2, d7bpka3, d7bpkb2, d7bpkb3, d7bpkc_, d7bpkd_, d7bpkh_, d7bpkl_
        automated match to d4gsxa1
        mutant
    7. Domains for 7bq5:
      1. 2628544Domain d7bq5a1: 7bq5 A:1-303 [401742]
        Other proteins in same PDB: d7bq5a2, d7bq5b2, d7bq5d1, d7bq5d2, d7bq5l1, d7bq5l2
        automated match to d4gsxa1
      2. 2628545Domain d7bq5b1: 7bq5 B:1-303 [401739]
        Other proteins in same PDB: d7bq5a2, d7bq5b2, d7bq5d1, d7bq5d2, d7bq5l1, d7bq5l2
        automated match to d4gsxa1

More info for Protein automated matches from f.10.1.0: automated matches

Timeline for Protein automated matches from f.10.1.0: automated matches: