SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
Fold f.10: Viral glycoprotein, central and dimerisation domains [56982] (1 superfamily)
2 intertwined domains; all-beta and alpha+beta
Superfamily f.10.1: Viral glycoprotein, central and dimerisation domains [56983] (2 families)
Family f.10.1.0: automated matches [227258] (1 protein)
not a true family
Protein automated matches [227047] (11 species)
not a true protein

Species:

Chikungunya virus [TaxId:37124] [226026] (2 PDB entries)
1. Domain for 3n43:
  - Domain d3n43f1: 3n43 F:1-292 [213716]
    Other proteins in same PDB: d3n43f2, d3n43f3
    automated match to d2alaa2
    complexed with act, nag
2. Domain for 3n44:
  - Domain d3n44f1: 3n44 F:1-292 [213718]
    Other proteins in same PDB: d3n44f2
    automated match to d2alaa2
    complexed with act, nag, os
Dengue virus 1 [TaxId:11059] [226543] (2 PDB entries)
1. Domains for 4gsx:
  1. Domain d4gsxa1: 4gsx A:2-297 [222123]
    Other proteins in same PDB: d4gsxa2, d4gsxb2
    automated match to d1urza2
    complexed with cd, cl, nag
  2. Domain d4gsxb1: 4gsx B:2-297 [222125]
    Other proteins in same PDB: d4gsxa2, d4gsxb2
    automated match to d1urza2
    complexed with cd, cl, nag
2. Domains for 4gt0:
  1. Domain d4gt0a1: 4gt0 A:2-297 [222131]
    Other proteins in same PDB: d4gt0a2, d4gt0b2
    automated match to d1urza2
    complexed with cd, cl, nag
  2. Domain d4gt0b1: 4gt0 B:2-297 [222133]
    Other proteins in same PDB: d4gt0a2, d4gt0b2
    automated match to d1urza2
    complexed with cd, cl, nag
Dengue virus 2 [TaxId:11060] [268948] (2 PDB entries)
1. Domains for 4uta:
  1. Domain d4utaa1: 4uta A:1-297 [268956]
    Other proteins in same PDB: d4utaa2, d4utaa3, d4utab2, d4utab3, d4utal1, d4utal2, d4utam1, d4utam2
    automated match to d4gsxa1
  2. Domain d4utab1: 4uta B:1-297 [268958]
    Other proteins in same PDB: d4utaa2, d4utaa3, d4utab2, d4utab3, d4utal1, d4utal2, d4utam1, d4utam2
    automated match to d4gsxa1
2. Domains for 4utc:
  1. Domain d4utca1: 4utc A:1-297 [268952]
    Other proteins in same PDB: d4utca2, d4utca3, d4utcb2, d4utcb3
    automated match to d4gsxa1
  2. Domain d4utcb1: 4utc B:1-297 [268949]
    Other proteins in same PDB: d4utca2, d4utca3, d4utcb2, d4utcb3
    automated match to d4gsxa1
Japanese encephalitis virus (strain sa-14) [TaxId:11073] [352507] (2 PDB entries)
1. Domain for 5mv1:
  - Domain d5mv1a1: 5mv1 A:1-299 [352519]
    Other proteins in same PDB: d5mv1a2, d5mv1a3
    automated match to d3p54a1
2. Domain for 5mv2:
  - Domain d5mv2a1: 5mv2 A:1-299 [352508]
    Other proteins in same PDB: d5mv2a2, d5mv2a3
    automated match to d3p54a1
Japanese encephalitis virus [TaxId:11072] [226036] (1 PDB entry)
- Domain for 3p54:
  - Domain d3p54a1: 3p54 A:1-299 [214662]
    Other proteins in same PDB: d3p54a2
    automated match to d1urza2
Tick-borne encephalitis virus [TaxId:11084] [385818] (1 PDB entry)
- Domain for 6s8c:
  - Domain d6s8cb1: 6s8c B:2-302 [385819]
    Other proteins in same PDB: d6s8ca1, d6s8cb2, d6s8cc1
    automated match to d4gsxa1
Usutu virus [TaxId:64286] [361607] (1 PDB entry)
- Domain for 6a0p:
  - Domain d6a0pa1: 6a0p A:0-299 [361609]
    Other proteins in same PDB: d6a0pa2, d6a0pa3
    automated match to d3p54a1
West Nile virus [TaxId:11082] [255208] (2 PDB entries)
1. Domain for 2hg0:
  - Domain d2hg0a1: 2hg0 A:1-300 [242033]
    Other proteins in same PDB: d2hg0a2
    automated match to d1urza2
2. Domain for 2i69:
  - Domain d2i69a1: 2i69 A:1-300 [242088]
    Other proteins in same PDB: d2i69a2
    automated match to d3p54a1

Yellow fever virus (strain 17d vaccine) [TaxId:11090] [364871] (3 PDB entries)

Domains for 6iw1:
1. Domain d6iw1a1: 6iw1 A:3-295 [364979]
  Other proteins in same PDB: d6iw1a2, d6iw1b2, d6iw1c2
  automated match to d3p54a1
2. Domain d6iw1b1: 6iw1 B:3-295 [364912]
  Other proteins in same PDB: d6iw1a2, d6iw1b2, d6iw1c2
  automated match to d3p54a1
3. Domain d6iw1c1: 6iw1 C:3-295 [364906]
  Other proteins in same PDB: d6iw1a2, d6iw1b2, d6iw1c2
  automated match to d3p54a1

Domains for 6iw2:

3022948

Domain d6iw2a1: 6iw2 A:1-295 [364990]
Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
automated match to d3p54a1

Domain d6iw2d1: 6iw2 D:1-295 [364982]
Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
automated match to d3p54a1

3022950

Domain d6iw2g1: 6iw2 G:1-295 [364872]
Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
automated match to d3p54a1

3022951

Domain d6iw2j1: 6iw2 J:1-295 [364910]
Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
automated match to d3p54a1

Domain d6iw2m1: 6iw2 M:1-295 [364917]
Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
automated match to d3p54a1

3022953

Domain d6iw2p1: 6iw2 P:1-295 [364927]
Other proteins in same PDB: d6iw2a2, d6iw2b_, d6iw2c_, d6iw2d2, d6iw2e_, d6iw2f_, d6iw2g2, d6iw2h_, d6iw2i_, d6iw2j2, d6iw2k_, d6iw2l_, d6iw2m2, d6iw2n_, d6iw2o_, d6iw2p2, d6iw2q_, d6iw2r_
automated match to d3p54a1

Domains for 6iw4:
1. Domain d6iw4a1: 6iw4 A:1-295 [364945]
  Other proteins in same PDB: d6iw4a2, d6iw4b2
  automated match to d3p54a1
2. Domain d6iw4b1: 6iw4 B:1-295 [364883]
  Other proteins in same PDB: d6iw4a2, d6iw4b2
  automated match to d3p54a1

Yellow fever virus [TaxId:11089] [359531] (3 PDB entries)
1. Domains for 6epk:
  1. Domain d6epka1: 6epk A:1-295 [359595]
    Other proteins in same PDB: d6epka2, d6epka3, d6epkd2, d6epkd3
    automated match to d2i69a1
    complexed with gol, so4
  2. Domain d6epkd1: 6epk D:1-295 [359532]
    Other proteins in same PDB: d6epka2, d6epka3, d6epkd2, d6epkd3
    automated match to d2i69a1
    complexed with gol, so4
2. Domain for 6ivz:
  - Domain d6ivza1: 6ivz A:2-295 [364857]
    Other proteins in same PDB: d6ivza2, d6ivzh_, d6ivzl_
    automated match to d3p54a1
3. Domains for 6iw5:
  1. Domain d6iw5a1: 6iw5 A:1-295 [364942]
    Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
    automated match to d3p54a1
  2. Domain d6iw5b1: 6iw5 B:1-295 [364842]
    Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
    automated match to d3p54a1
  3. Domain d6iw5c1: 6iw5 C:1-295 [364892]
    Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
    automated match to d3p54a1
  4. Domain d6iw5d1: 6iw5 D:1-295 [364900]
    Other proteins in same PDB: d6iw5a2, d6iw5b2, d6iw5c2, d6iw5d2
    automated match to d3p54a1
Zika virus [TaxId:64320] [317278] (7 PDB entries)
1. Domains for 5gzn:
  1. Domain d5gzna1: 5gzn A:1-303 [327657]
    Other proteins in same PDB: d5gzna2, d5gznb2, d5gznc_, d5gznd1, d5gznd2, d5gznh_, d5gznl1, d5gznl2
    automated match to d4gsxa1
  2. Domain d5gznb1: 5gzn B:1-303 [327600]
    Other proteins in same PDB: d5gzna2, d5gznb2, d5gznc_, d5gznd1, d5gznd2, d5gznh_, d5gznl1, d5gznl2
    automated match to d4gsxa1
2. Domains for 5gzo:
  1. Domain d5gzoa1: 5gzo A:1-303 [328459]
    Other proteins in same PDB: d5gzoa2, d5gzob2, d5gzoc1, d5gzoc2, d5gzod1, d5gzod2, d5gzoh1, d5gzoh2, d5gzol1, d5gzol2
    automated match to d4gsxa1
  2. Domain d5gzob1: 5gzo B:1-303 [328585]
    Other proteins in same PDB: d5gzoa2, d5gzob2, d5gzoc1, d5gzoc2, d5gzod1, d5gzod2, d5gzoh1, d5gzoh2, d5gzol1, d5gzol2
    automated match to d4gsxa1
3. Domain for 5jhl:
  - Domain d5jhla1: 5jhl A:1-303 [317279]
    Other proteins in same PDB: d5jhla2, d5jhlh_, d5jhll1, d5jhll2
    automated match to d4gsxa1
4. Domains for 5jhm:
  1. Domain d5jhma1: 5jhm A:1-303 [317287]
    Other proteins in same PDB: d5jhma2, d5jhmb2
    automated match to d4gsxa1
  2. Domain d5jhmb1: 5jhm B:1-303 [317317]
    Other proteins in same PDB: d5jhma2, d5jhmb2
    automated match to d4gsxa1
5. Domains for 5lbv:
  1. Domain d5lbva1: 5lbv A:1-303 [319446]
    Other proteins in same PDB: d5lbva2, d5lbvb2
    automated match to d4gsxa1
    complexed with na
  2. Domain d5lbvb1: 5lbv B:1-303 [319380]
    Other proteins in same PDB: d5lbva2, d5lbvb2
    automated match to d4gsxa1
    complexed with na
6. Domains for 7bpk:
  1. Domain d7bpka1: 7bpk A:1-303 [401736]
    Other proteins in same PDB: d7bpka2, d7bpka3, d7bpkb2, d7bpkb3, d7bpkc_, d7bpkd_, d7bpkh_, d7bpkl_
    automated match to d4gsxa1
    mutant
  2. Domain d7bpkb1: 7bpk B:1-303 [401699]
    Other proteins in same PDB: d7bpka2, d7bpka3, d7bpkb2, d7bpkb3, d7bpkc_, d7bpkd_, d7bpkh_, d7bpkl_
    automated match to d4gsxa1
    mutant
7. Domains for 7bq5:
  1. Domain d7bq5a1: 7bq5 A:1-303 [401742]
    Other proteins in same PDB: d7bq5a2, d7bq5b2, d7bq5c1, d7bq5c2, d7bq5d1, d7bq5d2, d7bq5h1, d7bq5h2, d7bq5l1, d7bq5l2
    automated match to d4gsxa1
  2. Domain d7bq5b1: 7bq5 B:1-303 [401739]
    Other proteins in same PDB: d7bq5a2, d7bq5b2, d7bq5c1, d7bq5c2, d7bq5d1, d7bq5d2, d7bq5h1, d7bq5h2, d7bq5l1, d7bq5l2
    automated match to d4gsxa1

More info for Protein automated matches from f.10.1.0: automated matches

Timeline for Protein automated matches from f.10.1.0: automated matches:

Protein automated matches from f.10.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from f.10.1.0: automated matches appears in SCOPe 2.07