Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2141885Fold c.85: FucI/AraA N-terminal and middle domains [53742] (1 superfamily)
    consists of two domains of similar topology, 3 layers (a/b/a) each
    Domain 1 (1-173) has parallel beta-sheet of 5 strands, order 21345
    Domain 2 (174-355) has parallel beta-sheet of 4 strands, order 2134
  4. 2141886Superfamily c.85.1: FucI/AraA N-terminal and middle domains [53743] (3 families) (S)
  5. 2141910Family c.85.1.0: automated matches [227251] (1 protein)
    not a true family
  6. 2141911Protein automated matches [227031] (3 species)
    not a true protein

Species:

  1. 2141912Geobacillus kaustophilus [TaxId:235909] [275930] (3 PDB entries)
    1. Domains for 4r1o:
      1. 2141925Domain d4r1oa1: 4r1o A:2-327 [275935]
        Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
        automated match to d2ajta2
      2. 2141926Domain d4r1ob1: 4r1o B:2-327 [275931]
        Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
        automated match to d2ajta2
      3. 2141927Domain d4r1oc1: 4r1o C:2-327 [275934]
        Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
        automated match to d2ajta2
      4. 2141928Domain d4r1od1: 4r1o D:2-327 [275938]
        Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
        automated match to d2ajta2
      5. 2141929Domain d4r1oe1: 4r1o E:3-327 [275942]
        Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
        automated match to d2ajta2
      6. 2141930Domain d4r1of1: 4r1o F:4-327 [275940]
        Other proteins in same PDB: d4r1oa2, d4r1ob2, d4r1oc2, d4r1od2, d4r1oe2, d4r1of2
        automated match to d2ajta2
    2. Domains for 4r1p:
      1. 2141919Domain d4r1pa1: 4r1p A:3-327 [275956]
        Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
        automated match to d2ajta2
        complexed with mn
      2. 2141920Domain d4r1pb1: 4r1p B:3-327 [275968]
        Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
        automated match to d2ajta2
        complexed with mn
      3. 2141921Domain d4r1pc1: 4r1p C:2-327 [275962]
        Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
        automated match to d2ajta2
        complexed with mn
      4. 2141922Domain d4r1pd1: 4r1p D:3-327 [275970]
        Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
        automated match to d2ajta2
        complexed with mn
      5. 2141923Domain d4r1pe1: 4r1p E:2-327 [275966]
        Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
        automated match to d2ajta2
        complexed with mn
      6. 2141924Domain d4r1pf1: 4r1p F:5-327 [275964]
        Other proteins in same PDB: d4r1pa2, d4r1pb2, d4r1pc2, d4r1pd2, d4r1pe2, d4r1pf2
        automated match to d2ajta2
        complexed with mn
    3. Domains for 4r1q:
      1. 2141913Domain d4r1qa1: 4r1q A:2-327 [275946]
        Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
        automated match to d2ajta2
        complexed with mn, sst
      2. 2141914Domain d4r1qb1: 4r1q B:3-327 [275944]
        Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
        automated match to d2ajta2
        complexed with mn, sst
      3. 2141915Domain d4r1qc1: 4r1q C:3-327 [275951]
        Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
        automated match to d2ajta2
        complexed with mn, sst
      4. 2141916Domain d4r1qd1: 4r1q D:1-327 [275954]
        Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
        automated match to d2ajta2
        complexed with mn, sst
      5. 2141917Domain d4r1qe1: 4r1q E:2-327 [275960]
        Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
        automated match to d2ajta2
        complexed with mn, sst
      6. 2141918Domain d4r1qf1: 4r1q F:2-327 [275958]
        Other proteins in same PDB: d4r1qa2, d4r1qb2, d4r1qc2, d4r1qd2, d4r1qe2, d4r1qf2
        automated match to d2ajta2
        complexed with mn, sst
  2. 2141931Geobacillus pallidus [TaxId:33936] [225862] (3 PDB entries)
    1. Domains for 3a9r:
      1. 2141935Domain d3a9ra1: 3a9r A:2-360 [208160]
        Other proteins in same PDB: d3a9ra2, d3a9rb2, d3a9rc2
        automated match to d1fuia2
        complexed with mn, mrd
      2. 2141936Domain d3a9rb1: 3a9r B:2-360 [208162]
        Other proteins in same PDB: d3a9ra2, d3a9rb2, d3a9rc2
        automated match to d1fuia2
        complexed with mn, mrd
      3. 2141937Domain d3a9rc1: 3a9r C:2-360 [208164]
        Other proteins in same PDB: d3a9ra2, d3a9rb2, d3a9rc2
        automated match to d1fuia2
        complexed with mn, mrd
    2. Domains for 3a9s:
      1. 2141932Domain d3a9sa1: 3a9s A:2-360 [208166]
        Other proteins in same PDB: d3a9sa2, d3a9sb2, d3a9sc2
        automated match to d1fuia2
        complexed with gol, mn
      2. 2141933Domain d3a9sb1: 3a9s B:2-360 [208168]
        Other proteins in same PDB: d3a9sa2, d3a9sb2, d3a9sc2
        automated match to d1fuia2
        complexed with gol, mn
      3. 2141934Domain d3a9sc1: 3a9s C:2-360 [208170]
        Other proteins in same PDB: d3a9sa2, d3a9sb2, d3a9sc2
        automated match to d1fuia2
        complexed with gol, mn
    3. Domains for 3a9t:
      1. 2141938Domain d3a9ta1: 3a9t A:2-360 [208172]
        Other proteins in same PDB: d3a9ta2, d3a9tb2, d3a9tc2
        automated match to d1fuia2
        complexed with foc, mn
      2. 2141939Domain d3a9tb1: 3a9t B:2-360 [208174]
        Other proteins in same PDB: d3a9ta2, d3a9tb2, d3a9tc2
        automated match to d1fuia2
        complexed with foc, mn
      3. 2141940Domain d3a9tc1: 3a9t C:2-360 [208176]
        Other proteins in same PDB: d3a9ta2, d3a9tb2, d3a9tc2
        automated match to d1fuia2
        complexed with foc, mn
  3. 2141941Streptococcus pneumoniae [TaxId:170187] [229523] (3 PDB entries)
    1. Domains for 4c20:
      1. 2141942Domain d4c20a1: 4c20 A:2-353 [229529]
        Other proteins in same PDB: d4c20a2, d4c20b2, d4c20b3
        automated match to d1fuia2
        complexed with edo, mn, so4, trs
      2. 2141943Domain d4c20b1: 4c20 B:2-353 [235849]
        Other proteins in same PDB: d4c20a2, d4c20b2, d4c20b3
        automated match to d4c20a1
        complexed with edo, mn, so4, trs
    2. Domains for 4c21:
      1. 2141944Domain d4c21a1: 4c21 A:2-353 [229524]
        Other proteins in same PDB: d4c21a2, d4c21b2, d4c21b3
        automated match to d1fuia2
        complexed with edo, foc, mn
      2. 2141945Domain d4c21b1: 4c21 B:1-353 [235857]
        Other proteins in same PDB: d4c21a2, d4c21b2, d4c21b3
        automated match to d4c21a1
        complexed with edo, foc, mn
    3. Domains for 4c22:
      1. 2141946Domain d4c22a1: 4c22 A:2-353 [229527]
        Other proteins in same PDB: d4c22a2, d4c22b2, d4c22b3
        automated match to d1fuia2
        complexed with cvu, edo, fuc, mn
      2. 2141947Domain d4c22b1: 4c22 B:2-353 [235855]
        Other proteins in same PDB: d4c22a2, d4c22b2, d4c22b3
        automated match to d4c22a1
        complexed with cvu, edo, fuc, mn

More info for Protein automated matches from c.85.1.0: automated matches

Timeline for Protein automated matches from c.85.1.0: automated matches: