SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
contains of two similar intertwined domains related by pseudo dyad; duplication
core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
molybdopterine enzyme
Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase
Protein automated matches [227025] (4 species)
not a true protein

Species:

Desulfovibrio desulfuricans [TaxId:876] [255265] (3 PDB entries)
1. Domain for 2jio:
  - Domain d2jioa2: 2jio A:4-600 [148094]
    Other proteins in same PDB: d2jioa1
    automated match to d2napa2
    complexed with mgd, mo, sf4, unx
2. Domain for 2jiq:
  - Domain d2jiqa2: 2jiq A:4-600 [148098]
    Other proteins in same PDB: d2jiqa1
    automated match to d2napa2
    complexed with mgd, mo, no2, no3, sf4, unx
3. Domain for 2v3v:
  - Domain d2v3va2: 2v3v A:3-600 [152464]
    Other proteins in same PDB: d2v3va1
    automated match to d2napa2
    complexed with lcp, mgd, mo, sf4, unx
Escherichia coli K-12 [TaxId:83333] [232054] (4 PDB entries)
1. Domain for 3egw:
  - Domain d3egwa1: 3egw A:1-1074 [232055]
    Other proteins in same PDB: d3egwa2, d3egwb_, d3egwc_
    automated match to d1q16a2
    complexed with 3ph, 6mo, aga, f3s, hem, md1, mgd, sf4; mutant
2. Domain for 3ir5:
  - Domain d3ir5a1: 3ir5 A:1-1074 [232613]
    Other proteins in same PDB: d3ir5a2, d3ir5b_, d3ir5c_
    automated match to d1q16a2
    complexed with 6mo, aga, f3s, hem, md1, sf4; mutant
3. Domain for 3ir6:
  - Domain d3ir6a1: 3ir6 A:1-1074 [232615]
    Other proteins in same PDB: d3ir6a2, d3ir6b_, d3ir6c_
    automated match to d1q16a2
    complexed with aga, f3s, gdp, hem, sf4; mutant
4. Domain for 3ir7:
  - Domain d3ir7a1: 3ir7 A:1-1074 [232617]
    Other proteins in same PDB: d3ir7a2, d3ir7b_, d3ir7c_
    automated match to d1q16a2
    complexed with 6mo, aga, f3s, hem, md1, sf4; mutant
Ralstonia eutropha [TaxId:381666] [226101] (2 PDB entries)
1. Domain for 3ml1:
  - Domain d3ml1a1: 3ml1 A:4-681 [213316]
    Other proteins in same PDB: d3ml1a2
    automated match to d1ogya2
    complexed with hec, mgd, mos, sf4
2. Domain for 3o5a:
  - Domain d3o5aa1: 3o5a A:11-681 [214166]
    Other proteins in same PDB: d3o5aa2
    automated match to d1ogya2
    complexed with cl, fmt, hec, mgd, mos, sf4

Thermus thermophilus HB8 [TaxId:300852] [255890] (3 PDB entries)

Domains for 3i9v:

Domain d3i9v33: 3i9v 3:247-685 [246757]
Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v31, d3i9v32, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc2, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
automated match to d2fug32
complexed with ca, fes, fmn, mn, sf4

Domain d3i9vc3: 3i9v C:247-685 [246770]
Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v31, d3i9v32, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc2, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
automated match to d2fug32
complexed with ca, fes, fmn, mn, sf4

Domains for 3iam:

Domain d3iam33: 3iam 3:247-685 [246783]
Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam31, d3iam32, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc1, d3iamc2, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
automated match to d2fug32
complexed with ca, fes, fmn, mg, nai, sf4

Domain d3iamc3: 3iam C:247-685 [246796]
Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam31, d3iam32, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc1, d3iamc2, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
automated match to d2fug32
complexed with ca, fes, fmn, mg, nai, sf4

Domains for 3ias:

Domain d3ias33: 3ias 3:247-685 [246849]
Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
automated match to d2fug32
complexed with ca, fes, fmn, sf4

Domain d3iasc3: 3ias C:247-685 [246862]
Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
automated match to d2fug32
complexed with ca, fes, fmn, sf4

Domain d3iasl3: 3ias L:247-685 [246875]
Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
automated match to d2fug32
complexed with ca, fes, fmn, sf4

Domain d3iasu3: 3ias U:247-685 [246888]
Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias32, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc2, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl2, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu2, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
automated match to d2fug32
complexed with ca, fes, fmn, sf4

More info for Protein automated matches from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3

Timeline for Protein automated matches from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3:

Protein automated matches from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 first appeared in SCOPe 2.03
Protein automated matches from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 appears in SCOPe 2.05
Protein automated matches from c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 appears in the current release, SCOPe 2.08