Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2972108Fold d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
    contains large mixed beta-sheet
  4. 2972109Superfamily d.117.1: Thymidylate synthase/dCMP hydroxymethylase [55831] (2 families) (S)
    automatically mapped to Pfam PF00303
  5. 2972770Family d.117.1.0: automated matches [227244] (1 protein)
    not a true family
  6. 2972771Protein automated matches [227010] (5 species)
    not a true protein

Species:

  1. 2972772Babesia bovis [TaxId:484906] [232544] (3 PDB entries)
    1. Domains for 3i3r:
      1. 2972777Domain d3i3ra2: 3i3r A:205-510 [232545]
        Other proteins in same PDB: d3i3ra1, d3i3rb1
        automated match to d1qzfa2
        complexed with cl
      2. 2972778Domain d3i3rb2: 3i3r B:205-505 [232547]
        Other proteins in same PDB: d3i3ra1, d3i3rb1
        automated match to d1qzfa2
        complexed with cl
    2. Domains for 3k2h:
      1. 2972775Domain d3k2ha2: 3k2h A:205-511 [247099]
        Other proteins in same PDB: d3k2ha1, d3k2hb1
        automated match to d3i3ra2
        complexed with edo, lya, nap, ump
      2. 2972776Domain d3k2hb2: 3k2h B:205-511 [247101]
        Other proteins in same PDB: d3k2ha1, d3k2hb1
        automated match to d3i3ra2
        complexed with edo, lya, nap, ump
    3. Domains for 3kjr:
      1. 2972773Domain d3kjra2: 3kjr A:205-511 [247211]
        Other proteins in same PDB: d3kjra1, d3kjrb1
        automated match to d3i3ra2
        complexed with gol, nap, nhe
      2. 2972774Domain d3kjrb2: 3kjr B:205-508 [247213]
        Other proteins in same PDB: d3kjra1, d3kjrb1
        automated match to d3i3ra2
        complexed with gol, nap, nhe
  2. 2972779Babesia bovis [TaxId:5865] [233034] (1 PDB entry)
  3. 2972782Brucella melitensis [TaxId:29459] [255897] (1 PDB entry)
  4. 2972784Burkholderia thailandensis [TaxId:271848] [226288] (1 PDB entry)
  5. 2972789Nematode (Caenorhabditis elegans) [TaxId:6239] [236135] (6 PDB entries)
    1. Domains for 4iqb:
      1. 2972790Domain d4iqba_: 4iqb A: [236140]
        automated match to d1tsla_
        complexed with so4
      2. 2972791Domain d4iqbb_: 4iqb B: [236136]
        automated match to d1tsla_
        complexed with so4
    2. Domains for 4iqq:
      1. 2972794Domain d4iqqa_: 4iqq A: [236139]
        automated match to d1tsla_
        complexed with d16, ump
      2. 2972795Domain d4iqqb_: 4iqq B: [236138]
        automated match to d1tsla_
        complexed with d16, ump
      3. 2972796Domain d4iqqc_: 4iqq C: [236137]
        automated match to d1tsla_
        complexed with d16, ump
      4. 2972797Domain d4iqqd_: 4iqq D: [236141]
        automated match to d1tsla_
        complexed with d16, ump
    3. Domains for 4irr:
      1. 2972792Domain d4irra_: 4irr A: [236407]
        automated match to d4iqqa_
        complexed with dtt, ump
      2. 2972793Domain d4irrb_: 4irr B: [236406]
        automated match to d4iqqa_
        complexed with dtt, ump
    4. Domains for 4isw:
      1. 2972804Domain d4iswa_: 4isw A: [252692]
        automated match to d4irra_
        complexed with ump
      2. 2972805Domain d4iswb_: 4isw B: [252693]
        automated match to d4irra_
        complexed with ump
    5. Domains for 4psg:
      1. 2972802Domain d4psga_: 4psg A: [269268]
        automated match to d4irra_
        complexed with noh
      2. 2972803Domain d4psgb_: 4psg B: [269271]
        automated match to d4irra_
        complexed with noh
    6. Domains for 5noo:
      1. 2972798Domain d5nooa_: 5noo A: [333818]
        automated match to d4irra_
        complexed with d16, ump
      2. 2972799Domain d5noob_: 5noo B: [333914]
        automated match to d4irra_
        complexed with d16, ump
      3. 2972800Domain d5nooc_: 5noo C: [333896]
        automated match to d4irra_
        complexed with d16, ump
      4. 2972801Domain d5nood_: 5noo D: [333873]
        automated match to d4irra_
        complexed with d16, ump

More info for Protein automated matches from d.117.1.0: automated matches

Timeline for Protein automated matches from d.117.1.0: automated matches: