SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.96: T-fold [55619] (2 superfamilies)
beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234
tunnel-shaped: its known members form wide oligomeric barrels different sizes
Superfamily d.96.1: Tetrahydrobiopterin biosynthesis enzymes-like [55620] (5 families)
bind purine or pterin in topologically similar sites between subunits
Family d.96.1.0: automated matches [227243] (1 protein)
not a true family
Protein automated matches [227009] (13 species)
not a true protein

Species:

Aspergillus flavus [TaxId:5059] [226800] (5 PDB entries)
1. Domains for 2pes:
  1. Domain d2pesa1: 2pes A:1-136 [149445]
    automated match to d2yzca1
    complexed with aza, lu, pdc
  2. Domain d2pesa2: 2pes A:137-295 [149446]
    automated match to d2yzca2
    complexed with aza, lu, pdc
2. Domains for 3l8w:
  1. Domain d3l8wa1: 3l8w A:1-136 [212758]
    automated match to d2yzca1
    complexed with 4po, na, xan
  2. Domain d3l8wa2: 3l8w A:137-295 [212759]
    automated match to d2yzca2
    complexed with 4po, na, xan
3. Domains for 3l9g:
  1. Domain d3l9ga1: 3l9g A:1-136 [212762]
    automated match to d2yzca1
    complexed with cl, mrd, na, urc
  2. Domain d3l9ga2: 3l9g A:137-295 [212763]
    automated match to d2yzca2
    complexed with cl, mrd, na, urc
4. Domains for 3lbg:
  1. Domain d3lbga1: 3lbg A:1-136 [212784]
    automated match to d2yzca1
    complexed with 8tx, edo, na, trs
  2. Domain d3lbga2: 3lbg A:137-295 [212785]
    automated match to d2yzca2
    complexed with 8tx, edo, na, trs
5. Domains for 3ld4:
  1. Domain d3ld4a1: 3ld4 A:1-136 [212828]
    automated match to d2yzca1
    complexed with 8nx, edo, na
  2. Domain d3ld4a2: 3ld4 A:137-295 [212829]
    automated match to d2yzca2
    complexed with 8nx, edo, na
Bacillus cereus [TaxId:1053183] [280391] (1 PDB entry)
- Domains for 5far:
  1. Domain d5fara_: 5far A: [280395]
    automated match to d3o1kd_
    complexed with 9mg
  2. Domain d5farb_: 5far B: [280394]
    automated match to d3o1kd_
    complexed with 9mg
  3. Domain d5farc_: 5far C: [280392]
    automated match to d3o1kd_
    complexed with 9mg
  4. Domain d5fard_: 5far D: [280393]
    automated match to d3o1kd_
    complexed with 9mg
  5. Domain d5fare_: 5far E: [280396]
    automated match to d3o1kd_
    complexed with 9mg
  6. Domain d5farf_: 5far F: [280404]
    automated match to d3o1kd_
    complexed with 9mg
  7. Domain d5farg_: 5far G: [280401]
    automated match to d3o1kd_
    complexed with 9mg
  8. Domain d5farh_: 5far H: [280407]
    automated match to d3o1kd_
    complexed with 9mg
Bacillus fastidiosus [TaxId:1458] [273141] (2 PDB entries)
1. Domains for 4r8x:
  1. Domain d4r8xa1: 4r8x A:3-154 [273144]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga1
  2. Domain d4r8xa2: 4r8x A:155-322 [273146]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga2
  3. Domain d4r8xb1: 4r8x B:3-154 [273148]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga1
  4. Domain d4r8xb2: 4r8x B:155-322 [273149]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga2
  5. Domain d4r8xc1: 4r8x C:3-154 [273145]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga1
  6. Domain d4r8xc2: 4r8x C:155-322 [273147]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga2
  7. Domain d4r8xd1: 4r8x D:3-154 [273142]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga1
  8. Domain d4r8xd2: 4r8x D:155-322 [273143]
    Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
    automated match to d1j2ga2
2. Domains for 4r99:
  1. Domain d4r99a1: 4r99 A:3-154 [300610]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d4r8xa1
    complexed with so4
  2. Domain d4r99a2: 4r99 A:155-322 [300611]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d4r8xa2
    complexed with so4
  3. Domain d4r99b1: 4r99 B:3-154 [300614]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d4r8xa1
    complexed with so4
  4. Domain d4r99b2: 4r99 B:155-322 [300615]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d4r8xa2
    complexed with so4
  5. Domain d4r99c1: 4r99 C:3-154 [273150]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d1j2ga1
    complexed with so4
  6. Domain d4r99c2: 4r99 C:155-322 [273151]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d1j2ga2
    complexed with so4
  7. Domain d4r99d1: 4r99 D:3-154 [300619]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d4r8xa1
    complexed with so4
  8. Domain d4r99d2: 4r99 D:155-322 [300620]
    Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
    automated match to d4r8xa2
    complexed with so4
Burkholderia thailandensis [TaxId:271848] [311343] (1 PDB entry)
- Domain for 3v9o:
  - Domain d3v9oa_: 3v9o A: [306679]
    automated match to d3o1kb_
    complexed with edo, gun, so4
Danio rerio [TaxId:7955] [327451] (2 PDB entries)
1. Domains for 5ll1:
  1. Domain d5ll1a1: 5ll1 A:8-142 [328959]
    automated match to d4n9sa1
  2. Domain d5ll1a2: 5ll1 A:143-294 [328960]
    automated match to d4n9sa2
  3. Domain d5ll1b1: 5ll1 B:8-142 [329058]
    automated match to d4n9sa1
  4. Domain d5ll1b2: 5ll1 B:143-294 [329059]
    automated match to d4n9sa2
  5. Domain d5ll1c1: 5ll1 C:8-142 [328955]
    automated match to d4n9sa1
  6. Domain d5ll1c2: 5ll1 C:143-294 [328956]
    automated match to d4n9sa2
  7. Domain d5ll1d1: 5ll1 D:8-142 [329088]
    automated match to d4n9sa1
  8. Domain d5ll1d2: 5ll1 D:143-294 [329089]
    automated match to d4n9sa2
  9. Domain d5ll1e1: 5ll1 E:8-142 [329163]
    automated match to d4n9sa1
  10. Domain d5ll1e2: 5ll1 E:143-294 [329164]
    automated match to d4n9sa2
  11. Domain d5ll1f1: 5ll1 F:8-142 [328992]
    automated match to d4n9sa1
  12. Domain d5ll1f2: 5ll1 F:143-294 [328993]
    automated match to d4n9sa2
  13. Domain d5ll1g1: 5ll1 G:8-142 [329007]
    automated match to d4n9sa1
  14. Domain d5ll1g2: 5ll1 G:143-294 [329008]
    automated match to d4n9sa2
  15. Domain d5ll1h1: 5ll1 H:8-142 [329010]
    automated match to d4n9sa1
  16. Domain d5ll1h2: 5ll1 H:143-294 [329011]
    automated match to d4n9sa2
2. Domains for 5m98:
  1. Domain d5m98a1: 5m98 A:8-142 [327452]
    automated match to d4n9sa1
  2. Domain d5m98a2: 5m98 A:143-294 [327453]
    automated match to d4n9sa2
  3. Domain d5m98b1: 5m98 B:8-142 [327510]
    automated match to d4n9sa1
  4. Domain d5m98b2: 5m98 B:143-294 [327511]
    automated match to d4n9sa2
  5. Domain d5m98c1: 5m98 C:8-142 [327455]
    automated match to d4n9sa1
  6. Domain d5m98c2: 5m98 C:143-294 [327456]
    automated match to d4n9sa2
  7. Domain d5m98d1: 5m98 D:8-142 [327474]
    automated match to d4n9sa1
  8. Domain d5m98d2: 5m98 D:143-294 [327475]
    automated match to d4n9sa2
  9. Domain d5m98e1: 5m98 E:8-142 [327508]
    automated match to d4n9sa1
  10. Domain d5m98e2: 5m98 E:143-294 [327509]
    automated match to d4n9sa2
  11. Domain d5m98f1: 5m98 F:8-142 [327542]
    automated match to d4n9sa1
  12. Domain d5m98f2: 5m98 F:143-294 [327543]
    automated match to d4n9sa2
  13. Domain d5m98g1: 5m98 G:8-142 [327520]
    automated match to d4n9sa1
  14. Domain d5m98g2: 5m98 G:143-294 [327521]
    automated match to d4n9sa2
  15. Domain d5m98h1: 5m98 H:8-142 [327458]
    automated match to d4n9sa1
  16. Domain d5m98h2: 5m98 H:143-294 [327459]
    automated match to d4n9sa2
Escherichia coli [311232] (2 PDB entries)
1. Domain for 2o90:
  - Domain d2o90a_: 2o90 A: [341828]
    automated match to d2o9mb_
    complexed with neu
2. Domains for 2o9m:
  1. Domain d2o9ma_: 2o9m A: [304264]
    automated match to d3o1kb_
    complexed with ph2
  2. Domain d2o9mb_: 2o9m B: [304265]
    automated match to d3o1kb_
    complexed with ph2
  3. Domain d2o9mc_: 2o9m C: [304266]
    automated match to d3o1kb_
    complexed with ph2
  4. Domain d2o9md_: 2o9m D: [304267]
    automated match to d3o1kb_
    complexed with ph2
  5. Domain d2o9me_: 2o9m E: [304268]
    automated match to d3o1kb_
    complexed with ph2
  6. Domain d2o9mf_: 2o9m F: [304269]
    automated match to d3o1kb_
    complexed with ph2
  7. Domain d2o9mg_: 2o9m G: [304270]
    automated match to d3o1kb_
    complexed with ph2
  8. Domain d2o9mh_: 2o9m H: [304271]
    automated match to d3o1kb_
    complexed with ph2
Escherichia coli [TaxId:469008] [230194] (6 PDB entries)
1. Domains for 3qn0:
  1. Domain d3qn0a_: 3qn0 A: [230195]
    automated match to d3i2ba_
    complexed with zn
  2. Domain d3qn0b_: 3qn0 B: [233337]
    automated match to d3qn0a_
    complexed with zn
  3. Domain d3qn0c_: 3qn0 C: [233338]
    automated match to d3qn0a_
    complexed with zn
  4. Domain d3qn0d_: 3qn0 D: [233339]
    automated match to d3qn0a_
    complexed with zn
  5. Domain d3qn0e_: 3qn0 E: [233340]
    automated match to d3qn0a_
    complexed with zn
  6. Domain d3qn0f_: 3qn0 F: [233341]
    automated match to d3qn0a_
    complexed with zn
2. Domains for 3qn9:
  1. Domain d3qn9a_: 3qn9 A: [233342]
    automated match to d3qn0a_
    complexed with zn
  2. Domain d3qn9b_: 3qn9 B: [233343]
    automated match to d3qn0a_
    complexed with zn
3. Domains for 3qna:
  1. Domain d3qnaa_: 3qna A: [233344]
    automated match to d3qn0a_
    complexed with bio, zn
  2. Domain d3qnab_: 3qna B: [262339]
    automated match to d2obab_
    complexed with bio, zn
  3. Domain d3qnac_: 3qna C: [262340]
    automated match to d2obab_
    complexed with bio, zn
  4. Domain d3qnad_: 3qna D: [262341]
    automated match to d2obab_
    complexed with bio, zn
  5. Domain d3qnae_: 3qna E: [262342]
    automated match to d2obab_
    complexed with bio, zn
  6. Domain d3qnaf_: 3qna F: [262343]
    automated match to d2obab_
    complexed with bio, zn
4. Domains for 4ntk:
  1. Domain d4ntka_: 4ntk A: [259409]
    automated match to d3qnaa_
    complexed with act, zn, zsp
  2. Domain d4ntkc_: 4ntk C: [263222]
    automated match to d4ntka_
    complexed with act, zn, zsp
  3. Domain d4ntkd_: 4ntk D: [263223]
    automated match to d4ntka_
    complexed with act, zn, zsp
  4. Domain d4ntke_: 4ntk E: [263224]
    automated match to d4ntka_
    complexed with act, zn, zsp
  5. Domain d4ntkf_: 4ntk F: [263225]
    automated match to d4ntka_
    complexed with act, zn, zsp
5. Domains for 4ntm:
  1. Domain d4ntma_: 4ntm A: [266982]
    automated match to d4ntka_
    complexed with 2k8, zn
  2. Domain d4ntmb_: 4ntm B: [266983]
    automated match to d4ntka_
    complexed with 2k8, zn
  3. Domain d4ntmc_: 4ntm C: [266984]
    automated match to d4ntka_
    complexed with 2k8, zn
  4. Domain d4ntmd_: 4ntm D: [266985]
    automated match to d4ntka_
    complexed with 2k8, zn
  5. Domain d4ntme_: 4ntm E: [266986]
    automated match to d4ntka_
    complexed with 2k8, zn
  6. Domain d4ntmf_: 4ntm F: [266987]
    automated match to d4ntka_
    complexed with 2k8, zn
6. Domains for 4ntn:
  1. Domain d4ntna_: 4ntn A: [257999]
    automated match to d3qn9a_
    complexed with fmt, zn
  2. Domain d4ntnb_: 4ntn B: [263226]
    automated match to d4ntka_
    complexed with fmt, zn
  3. Domain d4ntnc_: 4ntn C: [263227]
    automated match to d4ntka_
    complexed with fmt, zn
  4. Domain d4ntnd_: 4ntn D: [259410]
    automated match to d3qn9a_
    complexed with fmt, zn
  5. Domain d4ntne_: 4ntn E: [263228]
    automated match to d4ntka_
    complexed with fmt, zn
  6. Domain d4ntnf_: 4ntn F: [263229]
    automated match to d4ntka_
    complexed with fmt, zn
Escherichia coli [TaxId:83333] [257997] (1 PDB entry)
- Domain for 4ntk:
  - Domain d4ntkb_: 4ntk B: [257998]
    automated match to d3qnaa_
    complexed with act, zn, zsp
Human (Homo sapiens) [TaxId:9606] [225725] (1 PDB entry)
- Domains for 3i2b:
  1. Domain d3i2ba_: 3i2b A: [211429]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  2. Domain d3i2bb_: 3i2b B: [211430]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  3. Domain d3i2bc_: 3i2b C: [211431]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  4. Domain d3i2bd_: 3i2b D: [211432]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  5. Domain d3i2be_: 3i2b E: [211433]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  6. Domain d3i2bf_: 3i2b F: [211434]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  7. Domain d3i2bg_: 3i2b G: [211435]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  8. Domain d3i2bh_: 3i2b H: [211436]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  9. Domain d3i2bi_: 3i2b I: [211437]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  10. Domain d3i2bj_: 3i2b J: [211438]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  11. Domain d3i2bk_: 3i2b K: [211439]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
  12. Domain d3i2bl_: 3i2b L: [211440]
    automated match to d2g64a1
    complexed with edo, mg, ni, peg
Pseudomonas aeruginosa [TaxId:287] [230992] (2 PDB entries)
1. Domains for 2oba:
  1. Domain d2obaa1: 2oba A:2-118 [230994]
    Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
    automated match to d3i2ba_
    complexed with zn
  2. Domain d2obab1: 2oba B:2-118 [230995]
    Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
    automated match to d3i2ba_
    complexed with zn
  3. Domain d2obac1: 2oba C:2-118 [230993]
    Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
    automated match to d3i2ba_
    complexed with zn
  4. Domain d2obad1: 2oba D:2-118 [230996]
    Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
    automated match to d3i2ba_
    complexed with zn
  5. Domain d2obae1: 2oba E:2-118 [230997]
    Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
    automated match to d3i2ba_
    complexed with zn
  6. Domain d2obaf1: 2oba F:2-118 [230998]
    Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
    automated match to d3i2ba_
    complexed with zn
2. Domain for 4aey:
  - Domain d4aeya_: 4aey A: [251019]
    automated match to d1b9la_
Pyrococcus horikoshii OT3 [TaxId:70601] [255116] (2 PDB entries)
1. Domains for 2dj6:
  1. Domain d2dj6a_: 2dj6 A: [241575]
    automated match to d2obaa_
  2. Domain d2dj6b_: 2dj6 B: [241576]
    automated match to d2obaa_
  3. Domain d2dj6c_: 2dj6 C: [241577]
    automated match to d2obaa_
2. Domains for 2dtt:
  1. Domain d2dtta_: 2dtt A: [241646]
    automated match to d2obaa_
    complexed with h4b
  2. Domain d2dttb_: 2dtt B: [241647]
    automated match to d2obaa_
    complexed with h4b
  3. Domain d2dttc_: 2dtt C: [241648]
    automated match to d2obaa_
    complexed with h4b
  4. Domain d2dttd_: 2dtt D: [241649]
    automated match to d2obaa_
    complexed with h4b
  5. Domain d2dtte_: 2dtt E: [241650]
    automated match to d2obaa_
    complexed with h4b
  6. Domain d2dttf_: 2dtt F: [241651]
    automated match to d2obaa_
    complexed with h4b
Vibrio cholerae [TaxId:243277] [267860] (1 PDB entry)
- Domains for 3o1k:
  1. Domain d3o1ka_: 3o1k A: [265097]
    automated match to d4aeya_
    complexed with edo
  2. Domain d3o1kb_: 3o1k B: [265098]
    automated match to d4aeya_
    complexed with edo
  3. Domain d3o1kc_: 3o1k C: [265099]
    automated match to d4aeya_
    complexed with edo
  4. Domain d3o1kd_: 3o1k D: [265100]
    automated match to d4aeya_
    complexed with edo
Yersinia pestis [TaxId:632] [311332] (1 PDB entry)
- Domain for 3r2e:
  - Domain d3r2ea1: 3r2e A:1-116 [306403]
    Other proteins in same PDB: d3r2ea2
    automated match to d3o1kb_

More info for Protein automated matches from d.96.1.0: automated matches

Timeline for Protein automated matches from d.96.1.0: automated matches:

Protein automated matches from d.96.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.96.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.96.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from d.96.1.0: automated matches appears in the current release, SCOPe 2.08