Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2215792Fold d.131: DNA clamp [55978] (1 superfamily)
    contains two helices and two beta sheets
    duplication: fold has internal pseudo two-fold symmetry
  4. 2215793Superfamily d.131.1: DNA clamp [55979] (3 families) (S)
  5. 2215978Family d.131.1.2: DNA polymerase processivity factor [55983] (5 proteins)
    duplication: consists of two domains of this fold
  6. 2216140Protein automated matches [227006] (4 species)
    not a true protein

Species:

  1. 2216141Archaeoglobus fulgidus [TaxId:2234] [256015] (1 PDB entry)
  2. 2216148Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [232312] (4 PDB entries)
    1. Domains for 3gpn:
      1. 2216149Domain d3gpna1: 3gpn A:1-126 [232313]
        automated match to d1plqa1
        mutant
      2. 2216150Domain d3gpna2: 3gpn A:127-253 [232314]
        automated match to d1plqa2
        mutant
    2. Domain for 3l0w:
    3. Domains for 3l10:
      1. 2216152Domain d3l10a1: 3l10 A:1-126 [232750]
        automated match to d1plqa1
      2. 2216153Domain d3l10a2: 3l10 A:127-163 [232795]
        automated match to d1plqa2
    4. Domain for 3pge:
  3. 2216155Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [233826] (5 PDB entries)
    1. Domains for 3v60:
      1. 2216156Domain d3v60b1: 3v60 B:1-126 [233827]
        Other proteins in same PDB: d3v60a_
        automated match to d1plqa1
        protein/DNA complex; complexed with so4
      2. 2216157Domain d3v60b2: 3v60 B:127-256 [233828]
        Other proteins in same PDB: d3v60a_
        automated match to d1plqa2
        protein/DNA complex; complexed with so4
    2. Domains for 3v61:
      1. 2216162Domain d3v61b1: 3v61 B:1-126 [233829]
        Other proteins in same PDB: d3v61a_
        automated match to d1plqa1
        protein/DNA complex; complexed with ba, neq
      2. 2216163Domain d3v61b2: 3v61 B:127-254 [233830]
        Other proteins in same PDB: d3v61a_
        automated match to d1plqa2
        protein/DNA complex; complexed with ba, neq
    3. Domains for 3v62:
      1. 2216158Domain d3v62b1: 3v62 B:1-126 [239888]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b1
        protein/DNA complex; complexed with neq, so4
      2. 2216159Domain d3v62b2: 3v62 B:127-255 [239889]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b2
        protein/DNA complex; complexed with neq, so4
      3. 2216160Domain d3v62e1: 3v62 E:1-126 [239890]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b1
        protein/DNA complex; complexed with neq, so4
      4. 2216161Domain d3v62e2: 3v62 E:127-255 [239891]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b2
        protein/DNA complex; complexed with neq, so4
    4. Domains for 4l60:
      1. 2216170Domain d4l60a1: 4l60 A:1-126 [253529]
        automated match to d1plqa1
        mutant
      2. 2216171Domain d4l60a2: 4l60 A:127-256 [253530]
        automated match to d1plqa2
        mutant
    5. Domains for 4l6p:
      1. 2216164Domain d4l6pa1: 4l6p A:1-126 [259790]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa1
        complexed with gol; mutant
      2. 2216165Domain d4l6pa2: 4l6p A:127-254 [259791]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa2
        complexed with gol; mutant
      3. 2216166Domain d4l6pb1: 4l6p B:1-126 [260676]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa1
        complexed with gol; mutant
      4. 2216167Domain d4l6pb2: 4l6p B:127-253 [260677]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa2
        complexed with gol; mutant
      5. 2216168Domain d4l6pc1: 4l6p C:1-125 [262901]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa1
        complexed with gol; mutant
      6. 2216169Domain d4l6pc2: 4l6p C:130-255 [262902]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa2
        complexed with gol; mutant
  4. 2216172Pyrococcus furiosus [TaxId:2261] [225778] (1 PDB entry)

More info for Protein automated matches from d.131.1.2: DNA polymerase processivity factor

Timeline for Protein automated matches from d.131.1.2: DNA polymerase processivity factor: