Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2976821Fold d.131: DNA clamp [55978] (1 superfamily)
    contains two helices and two beta sheets
    duplication: fold has internal pseudo two-fold symmetry
  4. 2976822Superfamily d.131.1: DNA clamp [55979] (3 families) (S)
  5. 2977007Family d.131.1.2: DNA polymerase processivity factor [55983] (5 proteins)
    duplication: consists of two domains of this fold
  6. 2977199Protein automated matches [227006] (3 species)
    not a true protein

Species:

  1. 2977200Archaeoglobus fulgidus [TaxId:2234] [256015] (1 PDB entry)
  2. 2977207Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [232312] (4 PDB entries)
    1. Domains for 3gpn:
      1. 2977208Domain d3gpna1: 3gpn A:1-126 [232313]
        automated match to d1plqa1
        mutant
      2. 2977209Domain d3gpna2: 3gpn A:127-253 [232314]
        automated match to d1plqa2
        mutant
    2. Domain for 3l0w:
    3. Domains for 3l10:
      1. 2977211Domain d3l10a1: 3l10 A:1-126 [232750]
        automated match to d1plqa1
      2. 2977212Domain d3l10a2: 3l10 A:127-163 [232795]
        automated match to d1plqa2
        fragment; missing more than one-third of the common structure and/or sequence
    4. Domain for 3pge:
  3. 2977214Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [233826] (5 PDB entries)
    1. Domains for 3v60:
      1. 2977215Domain d3v60b1: 3v60 B:1-126 [233827]
        Other proteins in same PDB: d3v60a_
        automated match to d1plqa1
        protein/DNA complex; complexed with so4
      2. 2977216Domain d3v60b2: 3v60 B:127-256 [233828]
        Other proteins in same PDB: d3v60a_
        automated match to d1plqa2
        protein/DNA complex; complexed with so4
    2. Domains for 3v61:
      1. 2977225Domain d3v61b1: 3v61 B:1-126 [233829]
        Other proteins in same PDB: d3v61a_
        automated match to d1plqa1
        protein/DNA complex; complexed with ba, neq
      2. 2977226Domain d3v61b2: 3v61 B:127-254 [233830]
        Other proteins in same PDB: d3v61a_
        automated match to d1plqa2
        protein/DNA complex; complexed with ba, neq
    3. Domains for 3v62:
      1. 2977227Domain d3v62b1: 3v62 B:1-126 [239888]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b1
        protein/DNA complex; complexed with neq, so4
      2. 2977228Domain d3v62b2: 3v62 B:127-255 [239889]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b2
        protein/DNA complex; complexed with neq, so4
      3. 2977229Domain d3v62e1: 3v62 E:1-126 [239890]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b1
        protein/DNA complex; complexed with neq, so4
      4. 2977230Domain d3v62e2: 3v62 E:127-255 [239891]
        Other proteins in same PDB: d3v62a_, d3v62d_
        automated match to d3v60b2
        protein/DNA complex; complexed with neq, so4
    4. Domains for 4l60:
      1. 2977223Domain d4l60a1: 4l60 A:1-126 [253529]
        automated match to d1plqa1
        mutant
      2. 2977224Domain d4l60a2: 4l60 A:127-256 [253530]
        automated match to d1plqa2
        mutant
    5. Domains for 4l6p:
      1. 2977217Domain d4l6pa1: 4l6p A:1-126 [259790]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa1
        complexed with gol; mutant
      2. 2977218Domain d4l6pa2: 4l6p A:127-254 [259791]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa2
        complexed with gol; mutant
      3. 2977219Domain d4l6pb1: 4l6p B:1-126 [260676]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa1
        complexed with gol; mutant
      4. 2977220Domain d4l6pb2: 4l6p B:127-253 [260677]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa2
        complexed with gol; mutant
      5. 2977221Domain d4l6pc1: 4l6p C:1-125 [262901]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa1
        complexed with gol; mutant
      6. 2977222Domain d4l6pc2: 4l6p C:130-255 [262902]
        Other proteins in same PDB: d4l6pa3, d4l6pb3, d4l6pc3
        automated match to d1plqa2
        complexed with gol; mutant

More info for Protein automated matches from d.131.1.2: DNA polymerase processivity factor

Timeline for Protein automated matches from d.131.1.2: DNA polymerase processivity factor: