Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2426096Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2426097Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2429805Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 protein domains)
    extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site
  6. 2430089Protein automated matches [227005] (4 species)
    not a true protein

Species:

  1. 2430090Cow (Bos taurus) [TaxId:9913] [225674] (3 PDB entries)
    1. Domains for 3etd:
      1. 2430091Domain d3etda2: 3etd A:209-501 [209640]
        Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
        automated match to d1nr7a1
        complexed with b1t, glu, gtp, ndp
      2. 2430092Domain d3etdb2: 3etd B:209-501 [209642]
        Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
        automated match to d1nr7a1
        complexed with b1t, glu, gtp, ndp
      3. 2430093Domain d3etdc2: 3etd C:209-501 [209644]
        Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
        automated match to d1nr7a1
        complexed with b1t, glu, gtp, ndp
      4. 2430094Domain d3etdd2: 3etd D:209-501 [209646]
        Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
        automated match to d1nr7a1
        complexed with b1t, glu, gtp, ndp
      5. 2430095Domain d3etde2: 3etd E:209-501 [209648]
        Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
        automated match to d1nr7a1
        complexed with b1t, glu, gtp, ndp
      6. 2430096Domain d3etdf2: 3etd F:209-501 [209650]
        Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
        automated match to d1nr7a1
        complexed with b1t, glu, gtp, ndp
    2. Domains for 3ete:
      1. 2430103Domain d3etea2: 3ete A:209-498 [245907]
        Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
        automated match to d3etda2
        complexed with glu, gtp, h3p, ndp
      2. 2430104Domain d3eteb2: 3ete B:209-498 [245909]
        Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
        automated match to d3etda2
        complexed with glu, gtp, h3p, ndp
      3. 2430105Domain d3etec2: 3ete C:209-498 [245911]
        Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
        automated match to d3etda2
        complexed with glu, gtp, h3p, ndp
      4. 2430106Domain d3eted2: 3ete D:209-498 [245913]
        Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
        automated match to d3etda2
        complexed with glu, gtp, h3p, ndp
      5. 2430107Domain d3etee2: 3ete E:209-498 [245915]
        Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
        automated match to d3etda2
        complexed with glu, gtp, h3p, ndp
      6. 2430108Domain d3etef2: 3ete F:209-498 [245917]
        Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
        automated match to d3etda2
        complexed with glu, gtp, h3p, ndp
    3. Domains for 3etg:
      1. 2430097Domain d3etga2: 3etg A:209-501 [209652]
        Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
        automated match to d1nr7a1
        complexed with glu, gtp, gwd, ndp
      2. 2430098Domain d3etgb2: 3etg B:209-501 [209654]
        Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
        automated match to d1nr7a1
        complexed with glu, gtp, gwd, ndp
      3. 2430099Domain d3etgc2: 3etg C:209-501 [209656]
        Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
        automated match to d1nr7a1
        complexed with glu, gtp, gwd, ndp
      4. 2430100Domain d3etgd2: 3etg D:209-501 [209658]
        Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
        automated match to d1nr7a1
        complexed with glu, gtp, gwd, ndp
      5. 2430101Domain d3etge2: 3etg E:209-501 [209660]
        Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
        automated match to d1nr7a1
        complexed with glu, gtp, gwd, ndp
      6. 2430102Domain d3etgf2: 3etg F:209-501 [209662]
        Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
        automated match to d1nr7a1
        complexed with glu, gtp, gwd, ndp
  2. 2430109Salmonella enterica [TaxId:90371] [226190] (1 PDB entry)
  3. Thermotoga maritima [TaxId:2336] [255206] (1 PDB entry)
  4. 3046911Escherichia coli [TaxId:83333] [346973] (3 PDB entries)
    1. Domains for 5o22:
      1. 3046912Domain d5o22c2: 5o22 C:123-285 [346974]
        Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
        automated match to d1b0aa1
        complexed with c3r
      2. 3046947Domain d5o22d2: 5o22 D:123-285 [347009]
        Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
        automated match to d1b0aa1
        complexed with c3r
      3. 3047028Domain d5o22a2: 5o22 A:123-286 [347090]
        Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
        automated match to d1b0aa1
        complexed with c3r
      4. 3047133Domain d5o22b2: 5o22 B:123-284 [347195]
        Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
        automated match to d1b0aa1
        complexed with c3r
    2. Domains for 5o28:
      1. 3046929Domain d5o28b2: 5o28 B:123-285 [346991]
        Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
        automated match to d1b0aa1
      2. 3046942Domain d5o28c2: 5o28 C:123-285 [347004]
        Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
        automated match to d1b0aa1
      3. 3046967Domain d5o28d2: 5o28 D:123-285 [347029]
        Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
        automated match to d1b0aa1
      4. 3047045Domain d5o28a2: 5o28 A:123-286 [347107]
        Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
        automated match to d1b0aa1
    3. Domains for 5o2a:
      1. 3046962Domain d5o2ab2: 5o2a B:123-285 [347024]
        Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1
        automated match to d1b0aa1
      2. 3047004Domain d5o2ac2: 5o2a C:123-285 [347066]
        Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1
        automated match to d1b0aa1
      3. 3047023Domain d5o2ad2: 5o2a D:123-285 [347085]
        Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1
        automated match to d1b0aa1
      4. 3047030Domain d5o2aa2: 5o2a A:123-286 [347092]
        Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1
        automated match to d1b0aa1

More info for Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain

Timeline for Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain: