SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Protein automated matches [227005] (6 species)
not a true protein

Species:

Cow (Bos taurus) [TaxId:9913] [225674] (6 PDB entries)
1. Domains for 3etd:
  1. Domain d3etda2: 3etd A:209-501 [209640]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  2. Domain d3etdb2: 3etd B:209-501 [209642]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  3. Domain d3etdc2: 3etd C:209-501 [209644]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  4. Domain d3etdd2: 3etd D:209-501 [209646]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  5. Domain d3etde2: 3etd E:209-501 [209648]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  6. Domain d3etdf2: 3etd F:209-501 [209650]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
2. Domains for 3ete:
  1. Domain d3etea2: 3ete A:209-498 [245907]
    Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
    automated match to d3etda2
    complexed with glu, gtp, h3p, ndp
  2. Domain d3eteb2: 3ete B:209-498 [245909]
    Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
    automated match to d3etda2
    complexed with glu, gtp, h3p, ndp
  3. Domain d3etec2: 3ete C:209-498 [245911]
    Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
    automated match to d3etda2
    complexed with glu, gtp, h3p, ndp
  4. Domain d3eted2: 3ete D:209-498 [245913]
    Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
    automated match to d3etda2
    complexed with glu, gtp, h3p, ndp
  5. Domain d3etee2: 3ete E:209-498 [245915]
    Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
    automated match to d3etda2
    complexed with glu, gtp, h3p, ndp
  6. Domain d3etef2: 3ete F:209-498 [245917]
    Other proteins in same PDB: d3etea1, d3eteb1, d3etec1, d3eted1, d3etee1, d3etef1
    automated match to d3etda2
    complexed with glu, gtp, h3p, ndp
3. Domains for 3etg:
  1. Domain d3etga2: 3etg A:209-501 [209652]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  2. Domain d3etgb2: 3etg B:209-501 [209654]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  3. Domain d3etgc2: 3etg C:209-501 [209656]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  4. Domain d3etgd2: 3etg D:209-501 [209658]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  5. Domain d3etge2: 3etg E:209-501 [209660]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  6. Domain d3etgf2: 3etg F:209-501 [209662]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
4. Domains for 6dhd:
  1. Domain d6dhda2: 6dhd A:209-501 [355278]
    Other proteins in same PDB: d6dhda1, d6dhdb1, d6dhdc1, d6dhdd1, d6dhde1, d6dhdf1
    automated match to d3etda2
    complexed with glu, gtp, nai
  2. Domain d6dhdb2: 6dhd B:209-501 [355117]
    Other proteins in same PDB: d6dhda1, d6dhdb1, d6dhdc1, d6dhdd1, d6dhde1, d6dhdf1
    automated match to d3etda2
    complexed with glu, gtp, nai
  3. Domain d6dhdc2: 6dhd C:209-501 [355262]
    Other proteins in same PDB: d6dhda1, d6dhdb1, d6dhdc1, d6dhdd1, d6dhde1, d6dhdf1
    automated match to d3etda2
    complexed with glu, gtp, nai
  4. Domain d6dhdd2: 6dhd D:209-501 [355251]
    Other proteins in same PDB: d6dhda1, d6dhdb1, d6dhdc1, d6dhdd1, d6dhde1, d6dhdf1
    automated match to d3etda2
    complexed with glu, gtp, nai
  5. Domain d6dhde2: 6dhd E:209-501 [355240]
    Other proteins in same PDB: d6dhda1, d6dhdb1, d6dhdc1, d6dhdd1, d6dhde1, d6dhdf1
    automated match to d3etda2
    complexed with glu, gtp, nai
  6. Domain d6dhdf2: 6dhd F:209-501 [355122]
    Other proteins in same PDB: d6dhda1, d6dhdb1, d6dhdc1, d6dhdd1, d6dhde1, d6dhdf1
    automated match to d3etda2
    complexed with glu, gtp, nai
5. Domains for 6dhm:
  1. Domain d6dhma2: 6dhm A:209-495 [355126]
    Other proteins in same PDB: d6dhma1, d6dhmb1, d6dhmc1, d6dhmd1, d6dhme1, d6dhmf1
    automated match to d3etda2
    complexed with glu, gtp, ndp, zn
  2. Domain d6dhmb2: 6dhm B:209-495 [355114]
    Other proteins in same PDB: d6dhma1, d6dhmb1, d6dhmc1, d6dhmd1, d6dhme1, d6dhmf1
    automated match to d3etda2
    complexed with glu, gtp, ndp, zn
  3. Domain d6dhmc2: 6dhm C:209-495 [355115]
    Other proteins in same PDB: d6dhma1, d6dhmb1, d6dhmc1, d6dhmd1, d6dhme1, d6dhmf1
    automated match to d3etda2
    complexed with glu, gtp, ndp, zn
  4. Domain d6dhmd2: 6dhm D:209-495 [355337]
    Other proteins in same PDB: d6dhma1, d6dhmb1, d6dhmc1, d6dhmd1, d6dhme1, d6dhmf1
    automated match to d3etda2
    complexed with glu, gtp, ndp, zn
  5. Domain d6dhme2: 6dhm E:209-495 [355149]
    Other proteins in same PDB: d6dhma1, d6dhmb1, d6dhmc1, d6dhmd1, d6dhme1, d6dhmf1
    automated match to d3etda2
    complexed with glu, gtp, ndp, zn
  6. Domain d6dhmf2: 6dhm F:209-501 [355229]
    Other proteins in same PDB: d6dhma1, d6dhmb1, d6dhmc1, d6dhmd1, d6dhme1, d6dhmf1
    automated match to d3etda2
    complexed with glu, gtp, ndp, zn
6. Domains for 6dhq:
  1. Domain d6dhqa2: 6dhq A:209-501 [355130]
    Other proteins in same PDB: d6dhqa1, d6dhqb1, d6dhqc1, d6dhqd1, d6dhqe1, d6dhqf1
    automated match to d3etda2
    complexed with glu, gtp, ndp
  2. Domain d6dhqb2: 6dhq B:209-501 [355124]
    Other proteins in same PDB: d6dhqa1, d6dhqb1, d6dhqc1, d6dhqd1, d6dhqe1, d6dhqf1
    automated match to d3etda2
    complexed with glu, gtp, ndp
  3. Domain d6dhqc2: 6dhq C:209-501 [355249]
    Other proteins in same PDB: d6dhqa1, d6dhqb1, d6dhqc1, d6dhqd1, d6dhqe1, d6dhqf1
    automated match to d3etda2
    complexed with glu, gtp, ndp
  4. Domain d6dhqd2: 6dhq D:209-501 [355128]
    Other proteins in same PDB: d6dhqa1, d6dhqb1, d6dhqc1, d6dhqd1, d6dhqe1, d6dhqf1
    automated match to d3etda2
    complexed with glu, gtp, ndp
  5. Domain d6dhqe2: 6dhq E:209-501 [355253]
    Other proteins in same PDB: d6dhqa1, d6dhqb1, d6dhqc1, d6dhqd1, d6dhqe1, d6dhqf1
    automated match to d3etda2
    complexed with glu, gtp, ndp
  6. Domain d6dhqf2: 6dhq F:209-501 [355156]
    Other proteins in same PDB: d6dhqa1, d6dhqb1, d6dhqc1, d6dhqd1, d6dhqe1, d6dhqf1
    automated match to d3etda2
    complexed with glu, gtp, ndp
Escherichia coli [TaxId:83333] [346973] (3 PDB entries)
1. Domains for 5o22:
  1. Domain d5o22a2: 5o22 A:123-286 [347090]
    Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
    automated match to d1b0aa1
    complexed with c3r
  2. Domain d5o22b2: 5o22 B:123-284 [347195]
    Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
    automated match to d1b0aa1
    complexed with c3r
  3. Domain d5o22c2: 5o22 C:123-285 [346974]
    Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
    automated match to d1b0aa1
    complexed with c3r
  4. Domain d5o22d2: 5o22 D:123-285 [347009]
    Other proteins in same PDB: d5o22a1, d5o22b1, d5o22b3, d5o22c1, d5o22d1, d5o22d3
    automated match to d1b0aa1
    complexed with c3r
2. Domains for 5o28:
  1. Domain d5o28a2: 5o28 A:123-286 [347107]
    Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
    automated match to d1b0aa1
  2. Domain d5o28b2: 5o28 B:123-285 [346991]
    Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
    automated match to d1b0aa1
  3. Domain d5o28c2: 5o28 C:123-285 [347004]
    Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
    automated match to d1b0aa1
  4. Domain d5o28d2: 5o28 D:123-285 [347029]
    Other proteins in same PDB: d5o28a1, d5o28b1, d5o28b3, d5o28c1, d5o28d1, d5o28d3
    automated match to d1b0aa1
3. Domains for 5o2a:
  1. Domain d5o2aa2: 5o2a A:123-286 [347092]
    Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1, d5o2ad3
    automated match to d1b0aa1
  2. Domain d5o2ab2: 5o2a B:123-285 [347024]
    Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1, d5o2ad3
    automated match to d1b0aa1
  3. Domain d5o2ac2: 5o2a C:123-285 [347066]
    Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1, d5o2ad3
    automated match to d1b0aa1
  4. Domain d5o2ad2: 5o2a D:123-285 [347085]
    Other proteins in same PDB: d5o2aa1, d5o2ab1, d5o2ab3, d5o2ac1, d5o2ad1, d5o2ad3
    automated match to d1b0aa1
Geobacillus stearothermophilus [TaxId:272567] [361597] (1 PDB entry)
- Domains for 6acf:
  1. Domain d6acfa2: 6acf A:135-367 [361862]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
  2. Domain d6acfb2: 6acf B:135-367 [361599]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
  3. Domain d6acfc2: 6acf C:135-367 [361892]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
  4. Domain d6acfd2: 6acf D:135-367 [361783]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
  5. Domain d6acfe2: 6acf E:135-367 [361904]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
  6. Domain d6acff2: 6acf F:135-367 [361598]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
  7. Domain d6acfg2: 6acf G:135-367 [361601]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
  8. Domain d6acfh2: 6acf H:135-367 [361902]
    Other proteins in same PDB: d6acfa1, d6acfb1, d6acfc1, d6acfd1, d6acfe1, d6acff1, d6acfg1, d6acfh1
    automated match to d1leha1
Human (Homo sapiens) [TaxId:9606] [353659] (2 PDB entries)
1. Domains for 6dqg:
  1. Domain d6dqga2: 6dqg A:213-505 [353833]
    Other proteins in same PDB: d6dqga1, d6dqgb1, d6dqgc1, d6dqgd1, d6dqge1, d6dqgf1
    automated match to d1nr7a1
    complexed with po4; mutant
  2. Domain d6dqgb2: 6dqg B:213-505 [353835]
    Other proteins in same PDB: d6dqga1, d6dqgb1, d6dqgc1, d6dqgd1, d6dqge1, d6dqgf1
    automated match to d1nr7a1
    complexed with po4; mutant
  3. Domain d6dqgc2: 6dqg C:213-505 [353666]
    Other proteins in same PDB: d6dqga1, d6dqgb1, d6dqgc1, d6dqgd1, d6dqge1, d6dqgf1
    automated match to d1nr7a1
    complexed with po4; mutant
  4. Domain d6dqgd2: 6dqg D:213-505 [353661]
    Other proteins in same PDB: d6dqga1, d6dqgb1, d6dqgc1, d6dqgd1, d6dqge1, d6dqgf1
    automated match to d1nr7a1
    complexed with po4; mutant
  5. Domain d6dqge2: 6dqg E:213-505 [353662]
    Other proteins in same PDB: d6dqga1, d6dqgb1, d6dqgc1, d6dqgd1, d6dqge1, d6dqgf1
    automated match to d1nr7a1
    complexed with po4; mutant
  6. Domain d6dqgf2: 6dqg F:213-505 [353660]
    Other proteins in same PDB: d6dqga1, d6dqgb1, d6dqgc1, d6dqgd1, d6dqge1, d6dqgf1
    automated match to d1nr7a1
    complexed with po4; mutant
2. Domains for 6g2u:
  1. Domain d6g2ua2: 6g2u A:213-501 [367423]
    Other proteins in same PDB: d6g2ua1, d6g2ub1, d6g2uc1, d6g2ud1, d6g2ue1, d6g2uf1
    automated match to d3etda2
    complexed with cl, na, po4
  2. Domain d6g2ub2: 6g2u B:213-501 [367532]
    Other proteins in same PDB: d6g2ua1, d6g2ub1, d6g2uc1, d6g2ud1, d6g2ue1, d6g2uf1
    automated match to d3etda2
    complexed with cl, na, po4
  3. Domain d6g2uc2: 6g2u C:213-501 [367376]
    Other proteins in same PDB: d6g2ua1, d6g2ub1, d6g2uc1, d6g2ud1, d6g2ue1, d6g2uf1
    automated match to d3etda2
    complexed with cl, na, po4
  4. Domain d6g2ud2: 6g2u D:213-503 [367367]
    Other proteins in same PDB: d6g2ua1, d6g2ub1, d6g2uc1, d6g2ud1, d6g2ue1, d6g2uf1
    automated match to d3etda2
    complexed with cl, na, po4
  5. Domain d6g2ue2: 6g2u E:213-501 [367433]
    Other proteins in same PDB: d6g2ua1, d6g2ub1, d6g2uc1, d6g2ud1, d6g2ue1, d6g2uf1
    automated match to d3etda2
    complexed with cl, na, po4
  6. Domain d6g2uf2: 6g2u F:213-503 [367392]
    Other proteins in same PDB: d6g2ua1, d6g2ub1, d6g2uc1, d6g2ud1, d6g2ue1, d6g2uf1
    automated match to d3etda2
    complexed with cl, na, po4
Salmonella enterica [TaxId:90371] [226190] (1 PDB entry)
- Domains for 3t4e:
  1. Domain d3t4ea2: 3t4e A:107-288 [216677]
    Other proteins in same PDB: d3t4ea1, d3t4eb1
    automated match to d1vi2b1
    complexed with nad, po4
  2. Domain d3t4eb2: 3t4e B:107-286 [216679]
    Other proteins in same PDB: d3t4ea1, d3t4eb1
    automated match to d1vi2b1
    complexed with nad, po4
Thermotoga maritima [TaxId:2336] [255206] (1 PDB entry)
- Domains for 2hae:
  1. Domain d2haea1: 2hae A:155-376 [136278]
    Other proteins in same PDB: d2haea2, d2haeb2, d2haec2, d2haed2
    automated match to d1vl6a1
    complexed with nad, zn
  2. Domain d2haeb1: 2hae B:155-376 [136280]
    Other proteins in same PDB: d2haea2, d2haeb2, d2haec2, d2haed2
    automated match to d1vl6a1
    complexed with nad, zn
  3. Domain d2haec1: 2hae C:155-376 [136282]
    Other proteins in same PDB: d2haea2, d2haeb2, d2haec2, d2haed2
    automated match to d1vl6a1
    complexed with nad, zn
  4. Domain d2haed1: 2hae D:155-376 [136284]
    Other proteins in same PDB: d2haea2, d2haeb2, d2haec2, d2haed2
    automated match to d1vl6a1
    complexed with nad, zn

More info for Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain

Timeline for Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain:

Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain first appeared in SCOPe 2.03
Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain appears in SCOPe 2.07