Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1855607Fold c.48: TK C-terminal domain-like [52921] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 13245, strand 1 is antiparallel to the rest
  4. 1855608Superfamily c.48.1: TK C-terminal domain-like [52922] (4 families) (S)
  5. 1855774Family c.48.1.0: automated matches [227237] (1 protein)
    not a true family
  6. 1855775Protein automated matches [226991] (5 species)
    not a true protein

Species:

  1. 1855776Bacillus anthracis [TaxId:261594] [255873] (2 PDB entries)
    1. Domains for 3hyl:
      1. 1855779Domain d3hyla3: 3hyl A:528-666 [246616]
        Other proteins in same PDB: d3hyla1, d3hyla2, d3hylb1, d3hylb2
        automated match to d1itza3
        complexed with cl, fmt, gol, mg, peg, so4
      2. 1855780Domain d3hylb3: 3hyl B:528-666 [246619]
        Other proteins in same PDB: d3hyla1, d3hyla2, d3hylb1, d3hylb2
        automated match to d1itza3
        complexed with cl, fmt, gol, mg, peg, so4
    2. Domains for 3m49:
      1. 1855777Domain d3m49a3: 3m49 A:528-666 [247601]
        Other proteins in same PDB: d3m49a1, d3m49a2, d3m49b1, d3m49b2
        automated match to d1itza3
        complexed with acy, btb, fmt, gol, mg, peg, pg5, so4, tdp, trs
      2. 1855778Domain d3m49b3: 3m49 B:528-666 [247604]
        Other proteins in same PDB: d3m49a1, d3m49a2, d3m49b1, d3m49b2
        automated match to d1itza3
        complexed with acy, btb, fmt, gol, mg, peg, pg5, so4, tdp, trs
  2. 1855781Bacillus stearothermophilus [TaxId:1422] [225586] (3 PDB entries)
    1. Domains for 3duf:
      1. 1855790Domain d3dufb2: 3duf B:187-324 [199278]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      2. 1855791Domain d3dufd2: 3duf D:187-324 [199280]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      3. 1855792Domain d3duff2: 3duf F:187-324 [199282]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      4. 1855793Domain d3dufh2: 3duf H:187-324 [199284]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
    2. Domains for 3dv0:
      1. 1855786Domain d3dv0b2: 3dv0 B:187-324 [199288]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      2. 1855787Domain d3dv0d2: 3dv0 D:187-324 [199290]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      3. 1855788Domain d3dv0f2: 3dv0 F:187-324 [199292]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      4. 1855789Domain d3dv0h2: 3dv0 H:187-324 [199294]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
    3. Domains for 3dva:
      1. 1855782Domain d3dvab2: 3dva B:187-324 [199296]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      2. 1855783Domain d3dvad2: 3dva D:187-324 [199298]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      3. 1855784Domain d3dvaf2: 3dva F:187-324 [199300]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      4. 1855785Domain d3dvah2: 3dva H:187-324 [199302]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
  3. 1855794Escherichia coli [TaxId:83334] [255939] (3 PDB entries)
    1. Domains for 3lpl:
      1. 1855799Domain d3lpla3: 3lpl A:701-886 [247488]
        Other proteins in same PDB: d3lpla1, d3lpla2, d3lplb1, d3lplb2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 1855800Domain d3lplb3: 3lpl B:701-886 [247491]
        Other proteins in same PDB: d3lpla1, d3lpla2, d3lplb1, d3lplb2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
    2. Domains for 3lq2:
      1. 1855795Domain d3lq2a3: 3lq2 A:701-886 [247498]
        Other proteins in same PDB: d3lq2a1, d3lq2a2, d3lq2b1, d3lq2b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 1855796Domain d3lq2b3: 3lq2 B:701-886 [247501]
        Other proteins in same PDB: d3lq2a1, d3lq2a2, d3lq2b1, d3lq2b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
    3. Domains for 3lq4:
      1. 1855797Domain d3lq4a3: 3lq4 A:701-886 [247504]
        Other proteins in same PDB: d3lq4a1, d3lq4a2, d3lq4b1, d3lq4b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 1855798Domain d3lq4b3: 3lq4 B:701-886 [247507]
        Other proteins in same PDB: d3lq4a1, d3lq4a2, d3lq4b1, d3lq4b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
  4. 1855801Human (Homo sapiens) [TaxId:9606] [226799] (1 PDB entry)
  5. 1855804Lactobacillus salivarius [TaxId:362948] [260147] (2 PDB entries)
    1. Domain for 4c7v:
    2. Domain for 4c7x:

More info for Protein automated matches from c.48.1.0: automated matches

Timeline for Protein automated matches from c.48.1.0: automated matches: