Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families) (S)
    division into families based on beta-sheet topologies
  5. Family c.37.1.14: RNA helicase [52724] (7 proteins)
    duplication: consists of two similar domains, one binds NTP and the other binds RNA; also contains an all-alpha subdomain in the C-terminal extension
  6. Protein automated matches [226986] (8 species)
    not a true protein

Species:

  1. Dengue virus 4 [TaxId:11070] [341427] (1 PDB entry)
  2. Dengue virus 4 [TaxId:408688] [230921] (9 PDB entries)
    1. Domain for 2jlq:
    2. Domain for 2jlr:
    3. Domain for 2jls:
    4. Domains for 2jlu:
      1. Domain d2jlua1: 2jlu A:172-482 [230926]
        Other proteins in same PDB: d2jlua2, d2jlub2
        automated match to d2bhra2
        protein/RNA complex; complexed with gol
      2. Domain d2jlub1: 2jlu B:172-482 [230925]
        Other proteins in same PDB: d2jlua2, d2jlub2
        automated match to d2bhra2
        protein/RNA complex; complexed with gol
    5. Domains for 2jlv:
      1. Domain d2jlva1: 2jlv A:172-482 [230928]
        Other proteins in same PDB: d2jlva2, d2jlva3, d2jlvb2, d2jlvb3
        automated match to d2bhra2
        protein/RNA complex; complexed with anp, cl, gol, mn
      2. Domain d2jlvb1: 2jlv B:172-482 [230930]
        Other proteins in same PDB: d2jlva2, d2jlva3, d2jlvb2, d2jlvb3
        automated match to d2bhra2
        protein/RNA complex; complexed with anp, cl, gol, mn
    6. Domains for 2jlw:
      1. Domain d2jlwa1: 2jlw A:172-482 [230927]
        Other proteins in same PDB: d2jlwa2, d2jlwb2
        automated match to d2bhra2
        protein/RNA complex; complexed with gol, po4
      2. Domain d2jlwb1: 2jlw B:172-482 [230929]
        Other proteins in same PDB: d2jlwa2, d2jlwb2
        automated match to d2bhra2
        protein/RNA complex; complexed with gol, po4
    7. Domains for 2jlx:
      1. Domain d2jlxa1: 2jlx A:172-482 [230931]
        Other proteins in same PDB: d2jlxa2, d2jlxa3, d2jlxb2
        automated match to d2bhra2
        protein/RNA complex; complexed with adp, cl, mn, vo4
      2. Domain d2jlxb1: 2jlx B:172-482 [230932]
        Other proteins in same PDB: d2jlxa2, d2jlxa3, d2jlxb2
        automated match to d2bhra2
        protein/RNA complex; complexed with adp, cl, mn, vo4
    8. Domains for 2jly:
      1. Domain d2jlya1: 2jly A:172-482 [230934]
        Other proteins in same PDB: d2jlya2, d2jlya3, d2jlyb2, d2jlyb3
        automated match to d2bhra2
        protein/RNA complex; complexed with adp, gol, mn, po4
      2. Domain d2jlyb1: 2jly B:172-482 [230936]
        Other proteins in same PDB: d2jlya2, d2jlya3, d2jlyb2, d2jlyb3
        automated match to d2bhra2
        protein/RNA complex; complexed with adp, gol, mn, po4
    9. Domains for 2jlz:
      1. Domain d2jlza1: 2jlz A:172-482 [230933]
        Other proteins in same PDB: d2jlza2, d2jlzb2
        automated match to d2bhra2
        protein/RNA complex; complexed with adp, cl, gol, mn
      2. Domain d2jlzb1: 2jlz B:172-482 [230935]
        Other proteins in same PDB: d2jlza2, d2jlzb2
        automated match to d2bhra2
        protein/RNA complex; complexed with adp, cl, gol, mn
  3. Hepatitis C virus (isolate taiwan) [TaxId:31645] [225628] (1 PDB entry)
  4. Hepatitis C virus genotype 1b (isolate con1) [TaxId:333284] [317410] (1 PDB entry)
  5. Hepatitis C virus [TaxId:11103] [311460] (2 PDB entries)
    1. Domain for 4wxp:
    2. Domains for 4wxr:
      1. Domain d4wxra2: 4wxr A:326-627 [309922]
        Other proteins in same PDB: d4wxra1, d4wxrb1
        automated match to d4oksb2
        complexed with 3vz
      2. Domain d4wxrb2: 4wxr B:326-629 [309924]
        Other proteins in same PDB: d4wxra1, d4wxrb1
        automated match to d4oksb2
        complexed with 3vz
  6. West nile virus [TaxId:11078] [255564] (1 PDB entry)
  7. Zika virus (strain mr 766) [TaxId:64320] [327262] (9 PDB entries)
    1. Domain for 5txg:
    2. Domain for 5y4z:
    3. Domain for 5y6m:
    4. Domain for 5y6n:
    5. Domain for 6adw:
    6. Domain for 6adx:
    7. Domain for 6ady:
    8. Domain for 6mh3:
    9. Domain for 6s0j:
  8. Zika virus [TaxId:64320] [317808] (28 PDB entries)
    1. Domain for 5jmt:
    2. Domain for 5jps:
    3. Domain for 5jrz:
    4. Domain for 5jwh:
    5. Domain for 5k8i:
    6. Domain for 5k8l:
    7. Domain for 5k8t:
    8. Domain for 5k8u:
    9. Domain for 5rhg:
    10. Domain for 5rhh:
    11. Domain for 5rhi:
    12. Domain for 5rhj:
    13. Domain for 5rhk:
    14. Domain for 5rhl:
    15. Domain for 5rhm:
    16. Domain for 5rho:
    17. Domain for 5rhp:
    18. Domain for 5rhq:
    19. Domain for 5rhr:
    20. Domain for 5rhs:
    21. Domain for 5rht:
    22. Domain for 5rhu:
    23. Domain for 5rhv:
    24. Domain for 5rhw:
    25. Domain for 5rhx:
    26. Domain for 5rhy:
    27. Domain for 5vi7:
    28. Domain for 6rwz:

More info for Protein automated matches from c.37.1.14: RNA helicase

Timeline for Protein automated matches from c.37.1.14: RNA helicase: