Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2139045Fold c.78: ATC-like [53670] (2 superfamilies)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a, parallel beta-sheet of 4 strands, order 2134
  4. 2139721Superfamily c.78.2: Aspartate/glutamate racemase [53681] (2 families) (S)
  5. 2139740Family c.78.2.0: automated matches [227233] (1 protein)
    not a true family
  6. 2139741Protein automated matches [226982] (4 species)
    not a true protein

Species:

  1. 2139742Escherichia coli [TaxId:562] [279460] (2 PDB entries)
    1. Domains for 5ell:
      1. 2139743Domain d5ella1: 5ell A:1-116 [279464]
        Other proteins in same PDB: d5ella3, d5ellb3
        automated match to d3ojca1
      2. 2139744Domain d5ella2: 5ell A:117-230 [279465]
        Other proteins in same PDB: d5ella3, d5ellb3
        automated match to d3ojca2
      3. 2139745Domain d5ellb1: 5ell B:1-116 [279461]
        Other proteins in same PDB: d5ella3, d5ellb3
        automated match to d3ojca1
      4. 2139746Domain d5ellb2: 5ell B:117-230 [279462]
        Other proteins in same PDB: d5ella3, d5ellb3
        automated match to d3ojca2
    2. Domains for 5elm:
      1. 2139747Domain d5elma1: 5elm A:1-116 [279466]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca1
        complexed with glu, gol, no3
      2. 2139748Domain d5elma2: 5elm A:117-230 [279467]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca2
        complexed with glu, gol, no3
      3. 2139749Domain d5elmb1: 5elm B:1-116 [279468]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca1
        complexed with glu, gol, no3
      4. 2139750Domain d5elmb2: 5elm B:117-230 [279469]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca2
        complexed with glu, gol, no3
      5. 2139751Domain d5elmc1: 5elm C:1-116 [279470]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca1
        complexed with glu, gol, no3
      6. 2139752Domain d5elmc2: 5elm C:117-230 [279471]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca2
        complexed with glu, gol, no3
      7. 2139753Domain d5elmd1: 5elm D:1-116 [279472]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca1
        complexed with glu, gol, no3
      8. 2139754Domain d5elmd2: 5elm D:117-230 [279473]
        Other proteins in same PDB: d5elma3, d5elmb3, d5elmc3, d5elmd3
        automated match to d3ojca2
        complexed with glu, gol, no3
  2. 2139755Pyrococcus horikoshii OT3 [TaxId:70601] [225544] (1 PDB entry)
  3. 2139760Yersinia pestis [TaxId:214092] [225966] (1 PDB entry)
  4. 2273436Escherichia coli [TaxId:1330457] [316737] (3 PDB entries)
    1. Domains for 5hqt:
      1. 2273459Domain d5hqta1: 5hqt A:1-116 [316760]
        Other proteins in same PDB: d5hqta3
        automated match to d3ojca1
        complexed with nhe
      2. 2273460Domain d5hqta2: 5hqt A:117-230 [316761]
        Other proteins in same PDB: d5hqta3
        automated match to d3ojca2
        complexed with nhe
    2. Domains for 5hra:
      1. 2273449Domain d5hrab1: 5hra B:1-116 [316750]
        Other proteins in same PDB: d5hraa3, d5hrab3
        automated match to d3ojca1
        complexed with das
      2. 2273450Domain d5hrab2: 5hra B:117-230 [316751]
        Other proteins in same PDB: d5hraa3, d5hrab3
        automated match to d3ojca2
        complexed with das
      3. 2273469Domain d5hraa1: 5hra A:1-116 [316770]
        Other proteins in same PDB: d5hraa3, d5hrab3
        automated match to d3ojca1
        complexed with das
      4. 2273470Domain d5hraa2: 5hra A:117-230 [316771]
        Other proteins in same PDB: d5hraa3, d5hrab3
        automated match to d3ojca2
        complexed with das
    3. Domains for 5hrc:
      1. 2273437Domain d5hrca1: 5hrc A:1-116 [316738]
        Other proteins in same PDB: d5hrca3, d5hrcb3
        automated match to d3ojca1
        complexed with asp, nhe
      2. 2273438Domain d5hrca2: 5hrc A:117-230 [316739]
        Other proteins in same PDB: d5hrca3, d5hrcb3
        automated match to d3ojca2
        complexed with asp, nhe
      3. 2273442Domain d5hrcb1: 5hrc B:1-116 [316743]
        Other proteins in same PDB: d5hrca3, d5hrcb3
        automated match to d3ojca1
        complexed with asp, nhe
      4. 2273443Domain d5hrcb2: 5hrc B:117-230 [316744]
        Other proteins in same PDB: d5hrca3, d5hrcb3
        automated match to d3ojca2
        complexed with asp, nhe

More info for Protein automated matches from c.78.2.0: automated matches

Timeline for Protein automated matches from c.78.2.0: automated matches: