Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2321349Fold a.41: Domain of poly(ADP-ribose) polymerase [47586] (1 superfamily)
    core: 4 helices: bundle; unusual topology
  4. 2321350Superfamily a.41.1: Domain of poly(ADP-ribose) polymerase [47587] (2 families) (S)
    duplication: consists of 2 helix-loop-helix structural repeats
    automatically mapped to Pfam PF02877
  5. 2321375Family a.41.1.0: automated matches [227223] (1 protein)
    not a true family
  6. 2321376Protein automated matches [226964] (2 species)
    not a true protein

Species:

  1. 2321377Human (Homo sapiens) [TaxId:9606] [225405] (47 PDB entries)
    1. Domains for 1wok:
      1. 2321453Domain d1woka1: 1wok A:662-796 [121116]
        Other proteins in same PDB: d1woka2, d1wokb2, d1wokc2, d1wokd2
        automated match to d4hhyd1
        complexed with cnq
      2. 2321454Domain d1wokb1: 1wok B:662-796 [121118]
        Other proteins in same PDB: d1woka2, d1wokb2, d1wokc2, d1wokd2
        automated match to d4hhyd1
        complexed with cnq
      3. 2321455Domain d1wokc1: 1wok C:662-796 [121120]
        Other proteins in same PDB: d1woka2, d1wokb2, d1wokc2, d1wokd2
        automated match to d4hhyd1
        complexed with cnq
      4. 2321456Domain d1wokd1: 1wok D:662-796 [121122]
        Other proteins in same PDB: d1woka2, d1wokb2, d1wokc2, d1wokd2
        automated match to d4hhyd1
        complexed with cnq
    2. Domain for 2pa9:
    3. Domain for 3c49:
    4. Domain for 3c4h:
    5. Domain for 3ce0:
    6. Domain for 3fhb:
    7. Domains for 3kcz:
      1. 2321384Domain d3kcza1: 3kcz A:235-364 [212295]
        Other proteins in same PDB: d3kcza2, d3kcza3, d3kczb2, d3kczb3
        automated match to d1gs0a1
        protein/DNA complex; complexed with 3ab, gol
      2. 2321385Domain d3kczb1: 3kcz B:235-364 [212297]
        Other proteins in same PDB: d3kcza2, d3kcza3, d3kczb2, d3kczb3
        automated match to d1gs0a1
        protein/DNA complex; complexed with 3ab, gol
    8. Domains for 3kjd:
      1. 2321381Domain d3kjda1: 3kjd A:235-364 [212388]
        Other proteins in same PDB: d3kjda2, d3kjda3, d3kjdb2, d3kjdb3
        automated match to d1gs0a1
        protein/DNA complex; complexed with 78p, gol
      2. 2321382Domain d3kjdb1: 3kjd B:235-364 [212390]
        Other proteins in same PDB: d3kjda2, d3kjda3, d3kjdb2, d3kjdb3
        automated match to d1gs0a1
        protein/DNA complex; complexed with 78p, gol
    9. Domain for 4gv0:
    10. Domain for 4gv2:
    11. Domain for 4gv4:
    12. Domains for 4gv7:
      1. 2321439Domain d4gv7a1: 4gv7 A:663-796 [222196]
        Other proteins in same PDB: d4gv7a2, d4gv7b2, d4gv7c2, d4gv7d2
        automated match to d1gs0a1
        complexed with mew
      2. 2321440Domain d4gv7b1: 4gv7 B:663-796 [222198]
        Other proteins in same PDB: d4gv7a2, d4gv7b2, d4gv7c2, d4gv7d2
        automated match to d1gs0a1
        complexed with mew
      3. 2321441Domain d4gv7c1: 4gv7 C:663-796 [222200]
        Other proteins in same PDB: d4gv7a2, d4gv7b2, d4gv7c2, d4gv7d2
        automated match to d1gs0a1
        complexed with mew
      4. 2321442Domain d4gv7d1: 4gv7 D:663-796 [222202]
        Other proteins in same PDB: d4gv7a2, d4gv7b2, d4gv7c2, d4gv7d2
        automated match to d1gs0a1
        complexed with mew
    13. Domains for 4hhy:
      1. 2321401Domain d4hhya1: 4hhy A:1-135 [222602]
        Other proteins in same PDB: d4hhya2, d4hhyb2, d4hhyc2, d4hhyd2
        automated match to d1gs0a1
        complexed with 15r, peg, so4
      2. 2321402Domain d4hhyb1: 4hhy B:2-135 [222604]
        Other proteins in same PDB: d4hhya2, d4hhyb2, d4hhyc2, d4hhyd2
        automated match to d1gs0a1
        complexed with 15r, peg, so4
      3. 2321403Domain d4hhyc1: 4hhy C:1-135 [222606]
        Other proteins in same PDB: d4hhya2, d4hhyb2, d4hhyc2, d4hhyd2
        automated match to d1gs0a1
        complexed with 15r, peg, so4
      4. 2321404Domain d4hhyd1: 4hhy D:4-135 [222608]
        Other proteins in same PDB: d4hhya2, d4hhyb2, d4hhyc2, d4hhyd2
        automated match to d1gs0a1
        complexed with 15r, peg, so4
    14. Domains for 4hhz:
      1. 2321411Domain d4hhza1: 4hhz A:1-135 [222610]
        Other proteins in same PDB: d4hhza2, d4hhzb2, d4hhzc2, d4hhzd2
        automated match to d1gs0a1
        complexed with 15s, so4
      2. 2321412Domain d4hhzb1: 4hhz B:1-135 [222612]
        Other proteins in same PDB: d4hhza2, d4hhzb2, d4hhzc2, d4hhzd2
        automated match to d1gs0a1
        complexed with 15s, so4
      3. 2321413Domain d4hhzc1: 4hhz C:1-135 [222614]
        Other proteins in same PDB: d4hhza2, d4hhzb2, d4hhzc2, d4hhzd2
        automated match to d1gs0a1
        complexed with 15s, so4
      4. 2321414Domain d4hhzd1: 4hhz D:2-135 [222616]
        Other proteins in same PDB: d4hhza2, d4hhzb2, d4hhzc2, d4hhzd2
        automated match to d1gs0a1
        complexed with 15s, so4
    15. Domains for 4l6s:
      1. 2321394Domain d4l6sa1: 4l6s A:662-796 [224569]
        Other proteins in same PDB: d4l6sa2, d4l6sa3, d4l6sb2, d4l6sb3
        automated match to d1gs0a1
        protein/DNA complex; complexed with 1wq
      2. 2321395Domain d4l6sb1: 4l6s B:662-796 [224571]
        Other proteins in same PDB: d4l6sa2, d4l6sa3, d4l6sb2, d4l6sb3
        automated match to d1gs0a1
        protein/DNA complex; complexed with 1wq
    16. Domain for 4l6z:
    17. Domain for 4l70:
    18. Domain for 4l7l:
    19. Domain for 4l7n:
    20. Domain for 4l7o:
    21. Domain for 4l7p:
    22. Domain for 4l7r:
    23. Domain for 4l7u:
    24. Domains for 4pjt:
      1. 2321431Domain d4pjta1: 4pjt A:662-796 [259934]
        Other proteins in same PDB: d4pjta2, d4pjtb2, d4pjtc2, d4pjtd2
        automated match to d4hhyd1
        complexed with 2yq, gol, so4
      2. 2321432Domain d4pjtb1: 4pjt B:662-796 [263535]
        Other proteins in same PDB: d4pjta2, d4pjtb2, d4pjtc2, d4pjtd2
        automated match to d4hhyd1
        complexed with 2yq, gol, so4
      3. 2321433Domain d4pjtc1: 4pjt C:662-796 [259938]
        Other proteins in same PDB: d4pjta2, d4pjtb2, d4pjtc2, d4pjtd2
        automated match to d4hhyd1
        complexed with 2yq, gol, so4
      4. 2321434Domain d4pjtd1: 4pjt D:663-796 [259940]
        Other proteins in same PDB: d4pjta2, d4pjtb2, d4pjtc2, d4pjtd2
        automated match to d4hhyd1
        complexed with 2yq, gol, so4
    25. Domains for 4pjv:
      1. 2321437Domain d4pjva1: 4pjv A:235-364 [259930]
        Other proteins in same PDB: d4pjva2, d4pjva3, d4pjvb2, d4pjvb3
        automated match to d3kcza1
        complexed with 2yq, gol
      2. 2321438Domain d4pjvb1: 4pjv B:235-364 [259932]
        Other proteins in same PDB: d4pjva2, d4pjva3, d4pjvb2, d4pjvb3
        automated match to d3kcza1
        complexed with 2yq, gol
    26. Domains for 4r6e:
      1. 2321417Domain d4r6ea1: 4r6e A:661-796 [276725]
        Other proteins in same PDB: d4r6ea2, d4r6eb2, d4r6ec2, d4r6ed2
        automated match to d4hhyd1
        protein/DNA complex; complexed with 3jd, gol, so4
      2. 2321418Domain d4r6eb1: 4r6e B:662-796 [276721]
        Other proteins in same PDB: d4r6ea2, d4r6eb2, d4r6ec2, d4r6ed2
        automated match to d4hhyd1
        protein/DNA complex; complexed with 3jd, gol, so4
      3. 2321419Domain d4r6ec1: 4r6e C:661-796 [276719]
        Other proteins in same PDB: d4r6ea2, d4r6eb2, d4r6ec2, d4r6ed2
        automated match to d4hhyd1
        protein/DNA complex; complexed with 3jd, gol, so4
      4. 2321420Domain d4r6ed1: 4r6e D:663-796 [276723]
        Other proteins in same PDB: d4r6ea2, d4r6eb2, d4r6ec2, d4r6ed2
        automated match to d4hhyd1
        protein/DNA complex; complexed with 3jd, gol, so4
    27. Domains for 4rv6:
      1. 2321457Domain d4rv6a1: 4rv6 A:662-796 [309578]
        Other proteins in same PDB: d4rv6a2, d4rv6b2, d4rv6c2, d4rv6d2
        automated match to d4hhyd1
        complexed with rpb, so4
      2. 2321458Domain d4rv6b1: 4rv6 B:662-796 [309580]
        Other proteins in same PDB: d4rv6a2, d4rv6b2, d4rv6c2, d4rv6d2
        automated match to d4hhyd1
        complexed with rpb, so4
      3. 2321459Domain d4rv6c1: 4rv6 C:662-796 [309582]
        Other proteins in same PDB: d4rv6a2, d4rv6b2, d4rv6c2, d4rv6d2
        automated match to d4hhyd1
        complexed with rpb, so4
      4. 2321460Domain d4rv6d1: 4rv6 D:662-796 [309584]
        Other proteins in same PDB: d4rv6a2, d4rv6b2, d4rv6c2, d4rv6d2
        automated match to d4hhyd1
        complexed with rpb, so4
    28. Domains for 4tvj:
      1. 2321408Domain d4tvja1: 4tvj A:235-364 [274780]
        Other proteins in same PDB: d4tvja2, d4tvja3, d4tvjb2, d4tvjb3
        automated match to d3kcza1
        complexed with 09l, gol
      2. 2321409Domain d4tvjb1: 4tvj B:235-364 [274782]
        Other proteins in same PDB: d4tvja2, d4tvja3, d4tvjb2, d4tvjb3
        automated match to d3kcza1
        complexed with 09l, gol
    29. Domains for 4und:
      1. 2321415Domain d4unda1: 4und A:662-796 [273923]
        Other proteins in same PDB: d4unda2, d4unda3, d4undb2
        automated match to d4hhyd1
        protein/DNA complex; complexed with 2yq, na
      2. 2321416Domain d4undb1: 4und B:662-796 [273919]
        Other proteins in same PDB: d4unda2, d4unda3, d4undb2
        automated match to d4hhyd1
        protein/DNA complex; complexed with 2yq, na
    30. Domains for 4xhu:
      1. 2321406Domain d4xhua1: 4xhu A:661-796 [277636]
        Other proteins in same PDB: d4xhua2, d4xhuc2
        automated match to d4hhyd1
        protein/DNA complex; complexed with act, ca, gol
      2. 2321407Domain d4xhuc1: 4xhu C:665-796 [277639]
        Other proteins in same PDB: d4xhua2, d4xhuc2
        automated match to d4hhyd1
        protein/DNA complex; complexed with act, ca, gol
    31. Domains for 4zzx:
      1. 2321387Domain d4zzxa1: 4zzx A:231-364 [276099]
        Other proteins in same PDB: d4zzxa2, d4zzxb2
        automated match to d1gs0a1
        complexed with fsu
      2. 2321388Domain d4zzxb1: 4zzx B:233-364 [276101]
        Other proteins in same PDB: d4zzxa2, d4zzxb2
        automated match to d1gs0a1
        complexed with fsu
    32. Domain for 4zzy:
    33. Domain for 4zzz:
    34. Domain for 5a00:
    35. Domains for 5kpn:
      1. 2321429Domain d5kpna1: 5kpn A:662-796 [327403]
        Other proteins in same PDB: d5kpna2, d5kpna3, d5kpnb2, d5kpnb3
        automated match to d4hhyd1
        complexed with 6wx
      2. 2321430Domain d5kpnb1: 5kpn B:662-796 [327406]
        Other proteins in same PDB: d5kpna2, d5kpna3, d5kpnb2, d5kpnb3
        automated match to d4hhyd1
        complexed with 6wx
    36. Domains for 5kpo:
      1. 2321449Domain d5kpoa1: 5kpo A:662-796 [327465]
        Other proteins in same PDB: d5kpoa2, d5kpoa3, d5kpob2, d5kpob3
        automated match to d4hhyd1
        complexed with 6wy
      2. 2321450Domain d5kpob1: 5kpo B:662-796 [327409]
        Other proteins in same PDB: d5kpoa2, d5kpoa3, d5kpob2, d5kpob3
        automated match to d4hhyd1
        complexed with 6wy
    37. Domains for 5kpp:
      1. 2321435Domain d5kppa1: 5kpp A:662-796 [326676]
        Other proteins in same PDB: d5kppa2, d5kppb2
        automated match to d4hhyd1
        complexed with 6wz
      2. 2321436Domain d5kppb1: 5kpp B:662-796 [326823]
        Other proteins in same PDB: d5kppa2, d5kppb2
        automated match to d4hhyd1
        complexed with 6wz
    38. Domains for 5kpq:
      1. 2321443Domain d5kpqa1: 5kpq A:662-796 [327161]
        Other proteins in same PDB: d5kpqa2, d5kpqb2
        automated match to d4hhyd1
        complexed with 6x2
      2. 2321444Domain d5kpqb1: 5kpq B:662-796 [327187]
        Other proteins in same PDB: d5kpqa2, d5kpqb2
        automated match to d4hhyd1
        complexed with 6x2
    39. Domains for 5wrq:
      1. 2321445Domain d5wrqa1: 5wrq A:662-796 [329160]
        Other proteins in same PDB: d5wrqa2, d5wrqa3, d5wrqb2, d5wrqb3
        automated match to d4hhyd1
        complexed with 7tx
      2. 2321446Domain d5wrqb1: 5wrq B:662-796 [329080]
        Other proteins in same PDB: d5wrqa2, d5wrqa3, d5wrqb2, d5wrqb3
        automated match to d4hhyd1
        complexed with 7tx
    40. Domains for 5wry:
      1. 2321426Domain d5wrya1: 5wry A:662-796 [329131]
        Other proteins in same PDB: d5wrya2, d5wrya3, d5wryb2, d5wryb3
        automated match to d4hhyd1
        complexed with 4yr
      2. 2321427Domain d5wryb1: 5wry B:662-796 [329140]
        Other proteins in same PDB: d5wrya2, d5wrya3, d5wryb2, d5wryb3
        automated match to d4hhyd1
        complexed with 4yr
    41. Domains for 5wrz:
      1. 2321421Domain d5wrza1: 5wrz A:662-796 [329090]
        Other proteins in same PDB: d5wrza2, d5wrza3, d5wrzb2, d5wrzb3
        automated match to d4hhyd1
        complexed with 7u3
      2. 2321422Domain d5wrzb1: 5wrz B:662-796 [329065]
        Other proteins in same PDB: d5wrza2, d5wrza3, d5wrzb2, d5wrzb3
        automated match to d4hhyd1
        complexed with 7u3
    42. Domains for 5ws0:
      1. 2321447Domain d5ws0a1: 5ws0 A:662-796 [329097]
        Other proteins in same PDB: d5ws0a2, d5ws0a3, d5ws0b2, d5ws0b3
        automated match to d4hhyd1
        complexed with 7u6
      2. 2321448Domain d5ws0b1: 5ws0 B:662-796 [329156]
        Other proteins in same PDB: d5ws0a2, d5ws0a3, d5ws0b2, d5ws0b3
        automated match to d4hhyd1
        complexed with 7u6
    43. Domains for 5ws1:
      1. 2321397Domain d5ws1a1: 5ws1 A:662-796 [329053]
        Other proteins in same PDB: d5ws1a2, d5ws1a3, d5ws1b2, d5ws1b3
        automated match to d4hhyd1
        complexed with 7u9
      2. 2321398Domain d5ws1b1: 5ws1 B:662-796 [329062]
        Other proteins in same PDB: d5ws1a2, d5ws1a3, d5ws1b2, d5ws1b3
        automated match to d4hhyd1
        complexed with 7u9
    44. Domains for 5wtc:
      1. 2321424Domain d5wtca1: 5wtc A:662-796 [329125]
        Other proteins in same PDB: d5wtca2, d5wtca3, d5wtcb2, d5wtcb3
        automated match to d4hhyd1
        complexed with 7ul
      2. 2321425Domain d5wtcb1: 5wtc B:662-796 [329084]
        Other proteins in same PDB: d5wtca2, d5wtca3, d5wtcb2, d5wtcb3
        automated match to d4hhyd1
        complexed with 7ul
    45. Domain for 5xsr:
    46. Domain for 5xst:
    47. Domains for 5xsu:
      1. 3051472Domain d5xsua1: 5xsu A:1-135 [351534]
        Other proteins in same PDB: d5xsua2, d5xsub2, d5xsuc2, d5xsud2
        automated match to d4hhyd1
        complexed with 8e3, so4
      2. 3051490Domain d5xsud1: 5xsu D:4-135 [351552]
        Other proteins in same PDB: d5xsua2, d5xsub2, d5xsuc2, d5xsud2
        automated match to d4hhyd1
        complexed with 8e3, so4
      3. 3051504Domain d5xsuc1: 5xsu C:1-135 [351566]
        Other proteins in same PDB: d5xsua2, d5xsub2, d5xsuc2, d5xsud2
        automated match to d4hhyd1
        complexed with 8e3, so4
      4. 3051507Domain d5xsub1: 5xsu B:1-135 [351569]
        Other proteins in same PDB: d5xsua2, d5xsub2, d5xsuc2, d5xsud2
        automated match to d4hhyd1
        complexed with 8e3, so4
  2. 3068331Gallus gallus [TaxId:9031] [368393] (2 PDB entries)
    1. Domain for 6i8m:
    2. Domain for 6i8t:

More info for Protein automated matches from a.41.1.0: automated matches

Timeline for Protein automated matches from a.41.1.0: automated matches: