Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1689992Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1691655Fold e.6: Acyl-CoA dehydrogenase NM domain-like [56644] (1 superfamily)
    2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
  4. 1691656Superfamily e.6.1: Acyl-CoA dehydrogenase NM domain-like [56645] (3 families) (S)
    flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
  5. 1691657Family e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains [56646] (10 proteins)
  6. 1691743Protein automated matches [226961] (2 species)
    not a true protein

Species:

  1. 1691744Fungus (Fusarium oxysporum) [TaxId:5507] [231929] (7 PDB entries)
    1. Domains for 2reh:
      1. 1691765Domain d2reha2: 2reh A:2-260 [151974]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
      2. 1691766Domain d2rehb2: 2reh B:2-260 [151976]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
      3. 1691767Domain d2rehc2: 2reh C:2-260 [151978]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
      4. 1691768Domain d2rehd2: 2reh D:2-260 [151980]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
    2. Domains for 2zaf:
      1. 1691769Domain d2zafa2: 2zaf A:2-260 [154278]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
      2. 1691770Domain d2zafb2: 2zaf B:2-260 [154280]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
      3. 1691771Domain d2zafc2: 2zaf C:2-260 [154282]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
      4. 1691772Domain d2zafd2: 2zaf D:2-260 [154284]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
    3. Domains for 3d9d:
      1. 1691745Domain d3d9da1: 3d9d A:2-260 [231930]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      2. 1691746Domain d3d9db1: 3d9d B:2-260 [231934]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      3. 1691747Domain d3d9dc1: 3d9d C:2-260 [231936]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      4. 1691748Domain d3d9dd1: 3d9d D:2-260 [231938]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
    4. Domains for 3d9e:
      1. 1691753Domain d3d9ea1: 3d9e A:2-260 [231940]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
      2. 1691754Domain d3d9eb1: 3d9e B:2-260 [231941]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
      3. 1691755Domain d3d9ec1: 3d9e C:2-260 [231942]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
      4. 1691756Domain d3d9ed1: 3d9e D:2-260 [231943]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
    5. Domains for 3d9f:
      1. 1691757Domain d3d9fa1: 3d9f A:2-260 [231946]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      2. 1691758Domain d3d9fb1: 3d9f B:2-260 [231951]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      3. 1691759Domain d3d9fc1: 3d9f C:2-260 [231952]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      4. 1691760Domain d3d9fd1: 3d9f D:2-260 [231955]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
    6. Domains for 3d9g:
      1. 1691749Domain d3d9ga1: 3d9g A:2-260 [231956]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
      2. 1691750Domain d3d9gb1: 3d9g B:2-260 [231957]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
      3. 1691751Domain d3d9gc1: 3d9g C:2-260 [231959]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
      4. 1691752Domain d3d9gd1: 3d9g D:2-260 [231963]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
    7. Domains for 3fcj:
      1. 1691761Domain d3fcja1: 3fcj A:2-260 [246078]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
      2. 1691762Domain d3fcjb1: 3fcj B:2-260 [246080]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
      3. 1691763Domain d3fcjc1: 3fcj C:2-260 [246082]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
      4. 1691764Domain d3fcjd1: 3fcj D:2-260 [246084]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
  2. 1691773Human (Homo sapiens) [TaxId:9606] [225392] (3 PDB entries)
    1. Domains for 2a1t:
      1. 1691783Domain d2a1ta2: 2a1t A:10-241 [126006]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
      2. 1691784Domain d2a1tb2: 2a1t B:10-241 [126008]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
      3. 1691785Domain d2a1tc2: 2a1t C:9-241 [126010]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
      4. 1691786Domain d2a1td2: 2a1t D:10-241 [126012]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
    2. Domain for 2r0m:
    3. Domains for 2vig:
      1. 1691774Domain d2viga1: 2vig A:34-258 [206362]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad
      2. 1691775Domain d2vigb1: 2vig B:34-258 [206364]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad
      3. 1691776Domain d2vigc1: 2vig C:34-258 [206366]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad
      4. 1691777Domain d2vigd1: 2vig D:34-258 [206368]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad
      5. 1691778Domain d2vige1: 2vig E:34-258 [206370]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad
      6. 1691779Domain d2vigf1: 2vig F:34-258 [206372]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad
      7. 1691780Domain d2vigg1: 2vig G:34-258 [206374]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad
      8. 1691781Domain d2vigh1: 2vig H:34-258 [206376]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigd2, d2vige2, d2vigf2, d2vigg2, d2vigh2
        automated match to d1jqia2
        complexed with cos, edo, fad

More info for Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains

Timeline for Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains: