Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2570412Fold e.6: Acyl-CoA dehydrogenase NM domain-like [56644] (1 superfamily)
    2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
  4. 2570413Superfamily e.6.1: Acyl-CoA dehydrogenase NM domain-like [56645] (3 families) (S)
    flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
  5. 2570414Family e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains [56646] (10 proteins)
  6. 2570504Protein automated matches [226961] (2 species)
    not a true protein

Species:

  1. 2570505Fungus (Fusarium oxysporum) [TaxId:5507] [231929] (7 PDB entries)
    1. Domains for 2reh:
      1. 2570518Domain d2reha2: 2reh A:2-260 [151974]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
      2. 2570519Domain d2rehb2: 2reh B:2-260 [151976]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
      3. 2570520Domain d2rehc2: 2reh C:2-260 [151978]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
      4. 2570521Domain d2rehd2: 2reh D:2-260 [151980]
        Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
        automated match to d2c12a2
        complexed with fad
    2. Domains for 2zaf:
      1. 2570526Domain d2zafa2: 2zaf A:2-260 [154278]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
      2. 2570527Domain d2zafb2: 2zaf B:2-260 [154280]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
      3. 2570528Domain d2zafc2: 2zaf C:2-260 [154282]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
      4. 2570529Domain d2zafd2: 2zaf D:2-260 [154284]
        Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
        automated match to d2c12a2
        complexed with fad
    3. Domains for 3d9d:
      1. 2570506Domain d3d9da1: 3d9d A:2-260 [231930]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      2. 2570507Domain d3d9db1: 3d9d B:2-260 [231934]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      3. 2570508Domain d3d9dc1: 3d9d C:2-260 [231936]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      4. 2570509Domain d3d9dd1: 3d9d D:2-260 [231938]
        Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
    4. Domains for 3d9e:
      1. 2570530Domain d3d9ea1: 3d9e A:2-260 [231940]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
      2. 2570531Domain d3d9eb1: 3d9e B:2-260 [231941]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
      3. 2570532Domain d3d9ec1: 3d9e C:2-260 [231942]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
      4. 2570533Domain d3d9ed1: 3d9e D:2-260 [231943]
        Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
        automated match to d2c0ua2
        complexed with fad, gol, n8c; mutant
    5. Domains for 3d9f:
      1. 2570522Domain d3d9fa1: 3d9f A:2-260 [231946]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      2. 2570523Domain d3d9fb1: 3d9f B:2-260 [231951]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      3. 2570524Domain d3d9fc1: 3d9f C:2-260 [231952]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
      4. 2570525Domain d3d9fd1: 3d9f D:2-260 [231955]
        Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
        automated match to d2c0ua2
        complexed with fad, gol, n6c; mutant
    6. Domains for 3d9g:
      1. 2570514Domain d3d9ga1: 3d9g A:2-260 [231956]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
      2. 2570515Domain d3d9gb1: 3d9g B:2-260 [231957]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
      3. 2570516Domain d3d9gc1: 3d9g C:2-260 [231959]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
      4. 2570517Domain d3d9gd1: 3d9g D:2-260 [231963]
        Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
        automated match to d2c0ua2
        complexed with cnx, fad, gol
    7. Domains for 3fcj:
      1. 2570510Domain d3fcja1: 3fcj A:2-260 [246078]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
      2. 2570511Domain d3fcjb1: 3fcj B:2-260 [246080]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
      3. 2570512Domain d3fcjc1: 3fcj C:2-260 [246082]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
      4. 2570513Domain d3fcjd1: 3fcj D:2-260 [246084]
        Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
        automated match to d3d9da1
        complexed with fad, gol, nie; mutant
  2. 2570534Human (Homo sapiens) [TaxId:9606] [225392] (3 PDB entries)
    1. Domains for 2a1t:
      1. 2570544Domain d2a1ta2: 2a1t A:10-241 [126006]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
      2. 2570545Domain d2a1tb2: 2a1t B:10-241 [126008]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
      3. 2570546Domain d2a1tc2: 2a1t C:9-241 [126010]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
      4. 2570547Domain d2a1td2: 2a1t D:10-241 [126012]
        Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda2
        complexed with amp, fad
    2. Domain for 2r0m:
    3. Domains for 2vig:
      1. 2570535Domain d2viga1: 2vig A:34-258 [206362]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad
      2. 2570536Domain d2vigb1: 2vig B:34-258 [206364]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad
      3. 2570537Domain d2vigc1: 2vig C:34-258 [206366]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad
      4. 2570538Domain d2vigd1: 2vig D:34-258 [206368]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad
      5. 2570539Domain d2vige1: 2vig E:34-258 [206370]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad
      6. 2570540Domain d2vigf1: 2vig F:34-258 [206372]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad
      7. 2570541Domain d2vigg1: 2vig G:34-258 [206374]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad
      8. 2570542Domain d2vigh1: 2vig H:34-258 [206376]
        Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
        automated match to d1jqia2
        complexed with cos, edo, fad

More info for Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains

Timeline for Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains:

  • Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains first appeared in SCOPe 2.03
  • Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains appears in SCOPe 2.06