SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.6: Acyl-CoA dehydrogenase NM domain-like [56644] (1 superfamily)
2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
Superfamily e.6.1: Acyl-CoA dehydrogenase NM domain-like [56645] (3 families)
flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
Family e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains [56646] (10 proteins)
Protein automated matches [226961] (2 species)
not a true protein

Species:

Fungus (Fusarium oxysporum) [TaxId:5507] [231929] (7 PDB entries)
1. Domains for 2reh:
  1. Domain d2reha2: 2reh A:2-260 [151974]
    Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
    automated match to d2c12a2
    complexed with fad
  2. Domain d2rehb2: 2reh B:2-260 [151976]
    Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
    automated match to d2c12a2
    complexed with fad
  3. Domain d2rehc2: 2reh C:2-260 [151978]
    Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
    automated match to d2c12a2
    complexed with fad
  4. Domain d2rehd2: 2reh D:2-260 [151980]
    Other proteins in same PDB: d2reha1, d2rehb1, d2rehc1, d2rehd1
    automated match to d2c12a2
    complexed with fad
2. Domains for 2zaf:
  1. Domain d2zafa2: 2zaf A:2-260 [154278]
    Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
    automated match to d2c12a2
    complexed with fad
  2. Domain d2zafb2: 2zaf B:2-260 [154280]
    Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
    automated match to d2c12a2
    complexed with fad
  3. Domain d2zafc2: 2zaf C:2-260 [154282]
    Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
    automated match to d2c12a2
    complexed with fad
  4. Domain d2zafd2: 2zaf D:2-260 [154284]
    Other proteins in same PDB: d2zafa1, d2zafb1, d2zafc1, d2zafd1
    automated match to d2c12a2
    complexed with fad
3. Domains for 3d9d:
  1. Domain d3d9da1: 3d9d A:2-260 [231930]
    Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
  2. Domain d3d9db1: 3d9d B:2-260 [231934]
    Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
  3. Domain d3d9dc1: 3d9d C:2-260 [231936]
    Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
  4. Domain d3d9dd1: 3d9d D:2-260 [231938]
    Other proteins in same PDB: d3d9da2, d3d9db2, d3d9dc2, d3d9dd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
4. Domains for 3d9e:
  1. Domain d3d9ea1: 3d9e A:2-260 [231940]
    Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
    automated match to d2c0ua2
    complexed with fad, gol, n8c; mutant
  2. Domain d3d9eb1: 3d9e B:2-260 [231941]
    Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
    automated match to d2c0ua2
    complexed with fad, gol, n8c; mutant
  3. Domain d3d9ec1: 3d9e C:2-260 [231942]
    Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
    automated match to d2c0ua2
    complexed with fad, gol, n8c; mutant
  4. Domain d3d9ed1: 3d9e D:2-260 [231943]
    Other proteins in same PDB: d3d9ea2, d3d9eb2, d3d9ec2, d3d9ed2
    automated match to d2c0ua2
    complexed with fad, gol, n8c; mutant
5. Domains for 3d9f:
  1. Domain d3d9fa1: 3d9f A:2-260 [231946]
    Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
  2. Domain d3d9fb1: 3d9f B:2-260 [231951]
    Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
  3. Domain d3d9fc1: 3d9f C:2-260 [231952]
    Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
  4. Domain d3d9fd1: 3d9f D:2-260 [231955]
    Other proteins in same PDB: d3d9fa2, d3d9fb2, d3d9fc2, d3d9fd2
    automated match to d2c0ua2
    complexed with fad, gol, n6c; mutant
6. Domains for 3d9g:
  1. Domain d3d9ga1: 3d9g A:2-260 [231956]
    Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
    automated match to d2c0ua2
    complexed with cnx, fad, gol
  2. Domain d3d9gb1: 3d9g B:2-260 [231957]
    Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
    automated match to d2c0ua2
    complexed with cnx, fad, gol
  3. Domain d3d9gc1: 3d9g C:2-260 [231959]
    Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
    automated match to d2c0ua2
    complexed with cnx, fad, gol
  4. Domain d3d9gd1: 3d9g D:2-260 [231963]
    Other proteins in same PDB: d3d9ga2, d3d9gb2, d3d9gc2, d3d9gd2
    automated match to d2c0ua2
    complexed with cnx, fad, gol
7. Domains for 3fcj:
  1. Domain d3fcja1: 3fcj A:2-260 [246078]
    Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
    automated match to d3d9da1
    complexed with fad, gol, nie; mutant
  2. Domain d3fcjb1: 3fcj B:2-260 [246080]
    Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
    automated match to d3d9da1
    complexed with fad, gol, nie; mutant
  3. Domain d3fcjc1: 3fcj C:2-260 [246082]
    Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
    automated match to d3d9da1
    complexed with fad, gol, nie; mutant
  4. Domain d3fcjd1: 3fcj D:2-260 [246084]
    Other proteins in same PDB: d3fcja2, d3fcjb2, d3fcjc2, d3fcjd2
    automated match to d3d9da1
    complexed with fad, gol, nie; mutant

Human (Homo sapiens) [TaxId:9606] [225392] (3 PDB entries)

Domains for 2a1t:
1. Domain d2a1ta2: 2a1t A:10-241 [126006]
  Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
  automated match to d1egda2
  complexed with amp, fad
2. Domain d2a1tb2: 2a1t B:10-241 [126008]
  Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
  automated match to d1egda2
  complexed with amp, fad
3. Domain d2a1tc2: 2a1t C:9-241 [126010]
  Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
  automated match to d1egda2
  complexed with amp, fad
4. Domain d2a1td2: 2a1t D:10-241 [126012]
  Other proteins in same PDB: d2a1ta1, d2a1tb1, d2a1tc1, d2a1td1, d2a1tr1, d2a1tr2, d2a1ts1
  automated match to d1egda2
  complexed with amp, fad
Domain for 2r0m:
- Domain d2r0ma2: 2r0m A:3-238 [151505]
  Other proteins in same PDB: d2r0ma1
  automated match to d1siqa2
  complexed with 4ni, fad; mutant

Domains for 2vig:

Domain d2viga1: 2vig A:34-258 [206362]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

Domain d2vigb1: 2vig B:34-258 [206364]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

Domain d2vigc1: 2vig C:34-258 [206366]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

Domain d2vigd1: 2vig D:34-258 [206368]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

Domain d2vige1: 2vig E:34-258 [206370]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

Domain d2vigf1: 2vig F:34-258 [206372]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

Domain d2vigg1: 2vig G:34-258 [206374]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

Domain d2vigh1: 2vig H:34-258 [206376]
Other proteins in same PDB: d2viga2, d2vigb2, d2vigc2, d2vigc3, d2vigd2, d2vigd3, d2vige2, d2vige3, d2vigf2, d2vigf3, d2vigg2, d2vigh2, d2vigh3
automated match to d1jqia2
complexed with cos, edo, fad

More info for Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains

Timeline for Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains:

Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains first appeared in SCOPe 2.03
Protein automated matches from e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains appears in SCOPe 2.07