Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2139045Fold c.78: ATC-like [53670] (2 superfamilies)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a, parallel beta-sheet of 4 strands, order 2134
  4. 2139046Superfamily c.78.1: Aspartate/ornithine carbamoyltransferase [53671] (2 families) (S)
  5. 2139496Family c.78.1.0: automated matches [227206] (1 protein)
    not a true family
  6. 2139497Protein automated matches [226938] (22 species)
    not a true protein

Species:

  1. 2139498Aquifex aeolicus [TaxId:63363] [229765] (2 PDB entries)
    1. Domains for 3d6n:
      1. 2139499Domain d3d6nb1: 3d6n B:1-142 [231926]
        automated match to d4bjhb1
        protein/RNA complex; complexed with flc, zn
      2. 2139500Domain d3d6nb2: 3d6n B:143-291 [231927]
        automated match to d4bjhb2
        protein/RNA complex; complexed with flc, zn
    2. Domains for 4bjh:
      1. 2139501Domain d4bjhb1: 4bjh B:1-142 [229766]
        automated match to d3r7da1
        complexed with ba, dor, edo, pal, po4, zn
      2. 2139502Domain d4bjhb2: 4bjh B:143-291 [229774]
        automated match to d3r7da2
        complexed with ba, dor, edo, pal, po4, zn
  2. 2139503Bacillus anthracis [TaxId:261594] [256371] (1 PDB entry)
  3. 2139510Bacillus subtilis [TaxId:1423] [226788] (3 PDB entries)
    1. Domains for 3r7d:
      1. 2139517Domain d3r7da1: 3r7d A:1-143 [215616]
        automated match to d1ml4a1
        complexed with po4
      2. 2139518Domain d3r7da2: 3r7d A:144-291 [215617]
        automated match to d1ml4a2
        complexed with po4
      3. 2139519Domain d3r7db1: 3r7d B:1-143 [215618]
        automated match to d1ml4a1
        complexed with po4
      4. 2139520Domain d3r7db2: 3r7d B:144-291 [215619]
        automated match to d1ml4a2
        complexed with po4
      5. 2139521Domain d3r7dc1: 3r7d C:1-143 [215620]
        automated match to d1ml4a1
        complexed with po4
      6. 2139522Domain d3r7dc2: 3r7d C:144-291 [215621]
        automated match to d1ml4a2
        complexed with po4
    2. Domains for 3r7f:
      1. 2139511Domain d3r7fa1: 3r7f A:1-143 [215623]
        automated match to d1ml4a1
        complexed with cp, po4
      2. 2139512Domain d3r7fa2: 3r7f A:144-291 [215624]
        automated match to d1ml4a2
        complexed with cp, po4
      3. 2139513Domain d3r7fb1: 3r7f B:1-143 [215625]
        automated match to d1ml4a1
        complexed with cp, po4
      4. 2139514Domain d3r7fb2: 3r7f B:144-291 [215626]
        automated match to d1ml4a2
        complexed with cp, po4
      5. 2139515Domain d3r7fc1: 3r7f C:1-143 [215627]
        automated match to d1ml4a1
        complexed with cp, po4
      6. 2139516Domain d3r7fc2: 3r7f C:144-291 [215628]
        automated match to d1ml4a2
        complexed with cp, po4
    3. Domains for 3r7l:
      1. 2139523Domain d3r7la1: 3r7l A:1-143 [215638]
        automated match to d1ml4a1
        complexed with pal, po4
      2. 2139524Domain d3r7la2: 3r7l A:144-290 [215639]
        automated match to d1ml4a2
        complexed with pal, po4
      3. 2139525Domain d3r7lb1: 3r7l B:1-143 [215640]
        automated match to d1ml4a1
        complexed with pal, po4
      4. 2139526Domain d3r7lb2: 3r7l B:144-290 [215641]
        automated match to d1ml4a2
        complexed with pal, po4
      5. 2139527Domain d3r7lc1: 3r7l C:1-143 [215642]
        automated match to d1ml4a1
        complexed with pal, po4
      6. 2139528Domain d3r7lc2: 3r7l C:144-290 [215643]
        automated match to d1ml4a2
        complexed with pal, po4
      7. 2139529Domain d3r7ld1: 3r7l D:1-143 [215644]
        automated match to d1ml4a1
        complexed with pal, po4
      8. 2139530Domain d3r7ld2: 3r7l D:144-290 [215645]
        automated match to d1ml4a2
        complexed with pal, po4
      9. 2139531Domain d3r7le1: 3r7l E:1-143 [215646]
        automated match to d1ml4a1
        complexed with pal, po4
      10. 2139532Domain d3r7le2: 3r7l E:144-290 [215647]
        automated match to d1ml4a2
        complexed with pal, po4
      11. 2139533Domain d3r7lf1: 3r7l F:1-143 [215648]
        automated match to d1ml4a1
        complexed with pal, po4
      12. 2139534Domain d3r7lf2: 3r7l F:144-290 [215649]
        automated match to d1ml4a2
        complexed with pal, po4
  4. 2139535Brucella melitensis [TaxId:546272] [237214] (1 PDB entry)
  5. 2139540Burkholderia thailandensis [TaxId:271848] [226395] (1 PDB entry)
  6. 2139543Campylobacter jejuni [TaxId:192222] [226204] (1 PDB entry)
  7. 2139556Coccidioides immitis [TaxId:246410] [226160] (1 PDB entry)
  8. 2139563Enterococcus faecalis [TaxId:1351] [226301] (1 PDB entry)
  9. 2139566Giardia intestinalis [TaxId:5741] [225692] (1 PDB entry)
  10. 2139569Gloeobacter violaceus [TaxId:251221] [225645] (1 PDB entry)
  11. 2139582Lactobacillus hilgardii [TaxId:1588] [225787] (1 PDB entry)
  12. 2139589Methanocaldococcus jannaschii [TaxId:2190] [255807] (1 PDB entry)
  13. 2139614Methanocaldococcus jannaschii [TaxId:243232] [226368] (1 PDB entry)
  14. 2139617Mycobacterium tuberculosis [TaxId:1773] [225283] (1 PDB entry)
  15. 2139624Mycobacterium tuberculosis [TaxId:83332] [225288] (1 PDB entry)
  16. 2139637Mycoplasma penetrans [TaxId:28227] [226338] (2 PDB entries)
    1. Domains for 4amu:
      1. 2139638Domain d4amua1: 4amu A:1-153 [219048]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg1
      2. 2139639Domain d4amua2: 4amu A:154-342 [219049]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg2
      3. 2139640Domain d4amub1: 4amu B:1-153 [219050]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg1
      4. 2139641Domain d4amub2: 4amu B:154-342 [219051]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg2
      5. 2139642Domain d4amuc1: 4amu C:1-153 [219052]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg1
      6. 2139643Domain d4amuc2: 4amu C:154-342 [219053]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg2
      7. 2139644Domain d4amud1: 4amu D:1-153 [219054]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg1
      8. 2139645Domain d4amud2: 4amu D:154-342 [219055]
        Other proteins in same PDB: d4amua3, d4amub3, d4amuc3, d4amud3
        automated match to d1duvg2
    2. Domains for 4anf:
      1. 2139646Domain d4anfa1: 4anf A:1-153 [219070]
        automated match to d1duvg1
      2. 2139647Domain d4anfa2: 4anf A:154-342 [219071]
        automated match to d1duvg2
      3. 2139648Domain d4anfb1: 4anf B:1-153 [219072]
        automated match to d1duvg1
      4. 2139649Domain d4anfb2: 4anf B:154-342 [219073]
        automated match to d1duvg2
      5. 2139650Domain d4anfc1: 4anf C:1-153 [219074]
        automated match to d1duvg1
      6. 2139651Domain d4anfc2: 4anf C:154-342 [219075]
        automated match to d1duvg2
      7. 2139652Domain d4anfd1: 4anf D:1-153 [219076]
        automated match to d1duvg1
      8. 2139653Domain d4anfd2: 4anf D:154-342 [219077]
        automated match to d1duvg2
  17. 2139654Thermus thermophilus HB8 [TaxId:300852] [225252] (1 PDB entry)
  18. 2139657Trypanosoma cruzi [TaxId:353153] [226636] (1 PDB entry)
  19. 2139670Vibrio vulnificus [TaxId:216895] [226484] (6 PDB entries)
    1. Domains for 3upd:
      1. 2139701Domain d3upda1: 3upd A:-5-152 [233801]
        Other proteins in same PDB: d3upda3
        automated match to d4jfrb1
      2. 2139702Domain d3upda2: 3upd A:153-334 [233802]
        Other proteins in same PDB: d3upda3
        automated match to d4jfrb2
    2. Domains for 4h31:
      1. 2139671Domain d4h31a1: 4h31 A:1-152 [222349]
        Other proteins in same PDB: d4h31a3
        automated match to d1duvg1
        complexed with cl, cp, nva, pe5, peg
      2. 2139672Domain d4h31a2: 4h31 A:153-333 [222350]
        Other proteins in same PDB: d4h31a3
        automated match to d1duvg2
        complexed with cl, cp, nva, pe5, peg
      3. 2139673Domain d4h31b1: 4h31 B:1-152 [222351]
        Other proteins in same PDB: d4h31a3
        automated match to d1duvg1
        complexed with cl, cp, nva, pe5, peg
      4. 2139674Domain d4h31b2: 4h31 B:153-333 [222352]
        Other proteins in same PDB: d4h31a3
        automated match to d1duvg2
        complexed with cl, cp, nva, pe5, peg
      5. 2139675Domain d4h31c1: 4h31 C:1-152 [222353]
        Other proteins in same PDB: d4h31a3
        automated match to d1duvg1
        complexed with cl, cp, nva, pe5, peg
      6. 2139676Domain d4h31c2: 4h31 C:153-334 [222354]
        Other proteins in same PDB: d4h31a3
        automated match to d1duvg2
        complexed with cl, cp, nva, pe5, peg
    3. Domains for 4jfr:
      1. 2139695Domain d4jfra1: 4jfr A:1-152 [223790]
        Other proteins in same PDB: d4jfra3, d4jfrb3
        automated match to d1duvg1
        complexed with cl, cp, mg
      2. 2139696Domain d4jfra2: 4jfr A:153-334 [223791]
        Other proteins in same PDB: d4jfra3, d4jfrb3
        automated match to d1duvg2
        complexed with cl, cp, mg
      3. 2139697Domain d4jfrb1: 4jfr B:1-152 [223792]
        Other proteins in same PDB: d4jfra3, d4jfrb3
        automated match to d1duvg1
        complexed with cl, cp, mg
      4. 2139698Domain d4jfrb2: 4jfr B:153-334 [223793]
        Other proteins in same PDB: d4jfra3, d4jfrb3
        automated match to d1duvg2
        complexed with cl, cp, mg
      5. 2139699Domain d4jfrc1: 4jfr C:1-152 [223794]
        Other proteins in same PDB: d4jfra3, d4jfrb3
        automated match to d1duvg1
        complexed with cl, cp, mg
      6. 2139700Domain d4jfrc2: 4jfr C:153-334 [223795]
        Other proteins in same PDB: d4jfra3, d4jfrb3
        automated match to d1duvg2
        complexed with cl, cp, mg
    4. Domains for 4jhx:
      1. 2139677Domain d4jhxa1: 4jhx A:1-152 [223827]
        Other proteins in same PDB: d4jhxa3
        automated match to d1duvg1
        complexed with arg, cl, cp, peg
      2. 2139678Domain d4jhxa2: 4jhx A:153-334 [223828]
        Other proteins in same PDB: d4jhxa3
        automated match to d1duvg2
        complexed with arg, cl, cp, peg
      3. 2139679Domain d4jhxb1: 4jhx B:3-152 [223829]
        Other proteins in same PDB: d4jhxa3
        automated match to d1duvg1
        complexed with arg, cl, cp, peg
      4. 2139680Domain d4jhxb2: 4jhx B:153-334 [223830]
        Other proteins in same PDB: d4jhxa3
        automated match to d1duvg2
        complexed with arg, cl, cp, peg
      5. 2139681Domain d4jhxc1: 4jhx C:3-152 [223831]
        Other proteins in same PDB: d4jhxa3
        automated match to d1duvg1
        complexed with arg, cl, cp, peg
      6. 2139682Domain d4jhxc2: 4jhx C:153-334 [223832]
        Other proteins in same PDB: d4jhxa3
        automated match to d1duvg2
        complexed with arg, cl, cp, peg
    5. Domains for 4jqo:
      1. 2139689Domain d4jqoa1: 4jqo A:1-152 [223942]
        Other proteins in same PDB: d4jqoa3, d4jqob3
        automated match to d1duvg1
        complexed with cir, cl, peg, po4
      2. 2139690Domain d4jqoa2: 4jqo A:153-334 [223943]
        Other proteins in same PDB: d4jqoa3, d4jqob3
        automated match to d1duvg2
        complexed with cir, cl, peg, po4
      3. 2139691Domain d4jqob1: 4jqo B:1-152 [223944]
        Other proteins in same PDB: d4jqoa3, d4jqob3
        automated match to d1duvg1
        complexed with cir, cl, peg, po4
      4. 2139692Domain d4jqob2: 4jqo B:153-334 [223945]
        Other proteins in same PDB: d4jqoa3, d4jqob3
        automated match to d1duvg2
        complexed with cir, cl, peg, po4
      5. 2139693Domain d4jqoc1: 4jqo C:1-152 [223946]
        Other proteins in same PDB: d4jqoa3, d4jqob3
        automated match to d1duvg1
        complexed with cir, cl, peg, po4
      6. 2139694Domain d4jqoc2: 4jqo C:153-334 [223947]
        Other proteins in same PDB: d4jqoa3, d4jqob3
        automated match to d1duvg2
        complexed with cir, cl, peg, po4
    6. Domains for 4kwt:
      1. 2139683Domain d4kwta1: 4kwt A:1-152 [224513]
        Other proteins in same PDB: d4kwta3, d4kwtb3
        automated match to d1duvg1
        complexed with cl, peg
      2. 2139684Domain d4kwta2: 4kwt A:153-334 [224514]
        Other proteins in same PDB: d4kwta3, d4kwtb3
        automated match to d1duvg2
        complexed with cl, peg
      3. 2139685Domain d4kwtb1: 4kwt B:1-152 [224515]
        Other proteins in same PDB: d4kwta3, d4kwtb3
        automated match to d1duvg1
        complexed with cl, peg
      4. 2139686Domain d4kwtb2: 4kwt B:153-334 [224516]
        Other proteins in same PDB: d4kwta3, d4kwtb3
        automated match to d1duvg2
        complexed with cl, peg
      5. 2139687Domain d4kwtc1: 4kwt C:1-152 [224517]
        Other proteins in same PDB: d4kwta3, d4kwtb3
        automated match to d1duvg1
        complexed with cl, peg
      6. 2139688Domain d4kwtc2: 4kwt C:153-334 [224518]
        Other proteins in same PDB: d4kwta3, d4kwtb3
        automated match to d1duvg2
        complexed with cl, peg
  20. 2139703Xanthomonas campestris [TaxId:190485] [232743] (6 PDB entries)
    1. Domains for 3kzc:
      1. 2297593Domain d3kzca1: 3kzc A:3-164 [340894]
        automated match to d3kzoa1
        complexed with so4
      2. 2297594Domain d3kzca2: 3kzc A:165-334 [340895]
        automated match to d3kzoa2
        complexed with so4
    2. Domains for 3kzk:
      1. 2297576Domain d3kzka1: 3kzk A:3-164 [340877]
        automated match to d3kzoa1
        complexed with oln, so4
      2. 2297577Domain d3kzka2: 3kzk A:165-336 [340878]
        automated match to d3kzoa2
        complexed with oln, so4
    3. Domains for 3kzo:
      1. 2139704Domain d3kzoa1: 3kzo A:3-164 [232744]
        automated match to d2w37a1
        complexed with an0, cp, gol, so4
      2. 2139705Domain d3kzoa2: 3kzo A:165-334 [232745]
        automated match to d2w37a2
        complexed with an0, cp, gol, so4
    4. Domains for 3l05:
      1. 2139708Domain d3l05a1: 3l05 A:3-164 [232748]
        automated match to d2w37a1
        complexed with cp, sn0, so4; mutant
      2. 2139709Domain d3l05a2: 3l05 A:165-334 [232802]
        automated match to d2w37a2
        complexed with cp, sn0, so4; mutant
    5. Domains for 3l06:
      1. 2297583Domain d3l06a1: 3l06 A:3-164 [340884]
        automated match to d3kzoa1
        complexed with cp, sn0, so4; mutant
      2. 2297584Domain d3l06a2: 3l06 A:165-334 [340885]
        automated match to d3kzoa2
        complexed with cp, sn0, so4; mutant
    6. Domains for 3m4j:
      1. 2139706Domain d3m4ja1: 3m4j A:3-164 [247606]
        automated match to d3kzoa1
        complexed with pa9, so4
      2. 2139707Domain d3m4ja2: 3m4j A:165-334 [247607]
        automated match to d3kzoa2
        complexed with pa9, so4
  21. 2139710Xanthomonas campestris [TaxId:340] [232879] (3 PDB entries)
    1. Domains for 3m4n:
      1. 2139713Domain d3m4na1: 3m4n A:3-164 [232880]
        automated match to d2w37a1
        complexed with pa9, so4; mutant
      2. 2139714Domain d3m4na2: 3m4n A:165-334 [232893]
        automated match to d2w37a2
        complexed with pa9, so4; mutant
    2. Domains for 3m5c:
      1. 2139711Domain d3m5ca1: 3m5c A:3-164 [232882]
        automated match to d2w37a1
        complexed with pa9, so4; mutant
      2. 2139712Domain d3m5ca2: 3m5c A:165-334 [232892]
        automated match to d2w37a2
        complexed with pa9, so4; mutant
    3. Domains for 3m5d:
      1. 2139715Domain d3m5da1: 3m5d A:3-164 [232881]
        automated match to d2w37a1
        complexed with pa9, so4; mutant
      2. 2139716Domain d3m5da2: 3m5d A:165-334 [232889]
        automated match to d2w37a2
        complexed with pa9, so4; mutant
  22. 2139717Yersinia pestis [TaxId:214092] [225856] (1 PDB entry)

More info for Protein automated matches from c.78.1.0: automated matches

Timeline for Protein automated matches from c.78.1.0: automated matches: