Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2722035Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. 2722506Superfamily a.102.4: Terpenoid cyclases/Protein prenyltransferases [48239] (5 families) (S)
  5. 2722844Family a.102.4.0: automated matches [227201] (1 protein)
    not a true family
  6. 2722845Protein automated matches [226931] (12 species)
    not a true protein

Species:

  1. 2722846Artemisia annua [TaxId:35608] [226616] (2 PDB entries)
    1. Domain for 4fjq:
    2. Domain for 4gax:
  2. 2722849Citrus sinensis [TaxId:2711] [332182] (4 PDB entries)
    1. Domain for 5uv0:
    2. Domain for 5uv1:
    3. Domain for 5uv2:
    4. Domain for 6onm:
  3. 2722854Gossypium arboreum [TaxId:29729] [225678] (2 PDB entries)
    1. Domains for 3g4d:
      1. 2722855Domain d3g4da1: 3g4d A:25-226 [210351]
        Other proteins in same PDB: d3g4da2, d3g4db2
        automated match to d1hxga1
        complexed with bme, gol
      2. 2722856Domain d3g4db1: 3g4d B:28-226 [210353]
        Other proteins in same PDB: d3g4da2, d3g4db2
        automated match to d1hxga1
        complexed with bme, gol
    2. Domains for 3g4f:
      1. 2722857Domain d3g4fa1: 3g4f A:25-226 [210355]
        Other proteins in same PDB: d3g4fa2, d3g4fb2
        automated match to d1hxga1
        complexed with bme, fpf, mg
      2. 2722858Domain d3g4fb1: 3g4f B:25-226 [210357]
        Other proteins in same PDB: d3g4fa2, d3g4fb2
        automated match to d1hxga1
        complexed with bme, fpf, mg
  4. 2722859Hyoscyamus muticus [TaxId:35626] [333733] (1 PDB entry)
  5. 2722864Mentha spicata [TaxId:29719] [225228] (2 PDB entries)
    1. Domains for 2ong:
      1. 2722867Domain d2onga1: 2ong A:57-271 [205333]
        Other proteins in same PDB: d2onga2, d2ongb2
        automated match to d1n1ba1
        complexed with btb, fpg, mn
      2. 2722868Domain d2ongb1: 2ong B:57-271 [205335]
        Other proteins in same PDB: d2onga2, d2ongb2
        automated match to d1n1ba1
        complexed with btb, fpg, mn
    2. Domains for 2onh:
      1. 2722865Domain d2onha1: 2onh A:57-271 [205337]
        Other proteins in same PDB: d2onha2, d2onhb2
        automated match to d1n1ba1
        complexed with btb, f3p, mn
      2. 2722866Domain d2onhb1: 2onh B:57-271 [205339]
        Other proteins in same PDB: d2onha2, d2onhb2
        automated match to d1n1ba1
        complexed with btb, f3p, mn
  6. 2722869Persicaria hydropiper [TaxId:46901] [420107] (1 PDB entry)
  7. 2722872Populus tremula [TaxId:80863] [225927] (2 PDB entries)
    1. Domains for 3n0f:
      1. 2722873Domain d3n0fa1: 3n0f A:57-265 [213665]
        Other proteins in same PDB: d3n0fa2, d3n0fb2
        automated match to d1hxga1
      2. 2722874Domain d3n0fb1: 3n0f B:57-265 [213667]
        Other proteins in same PDB: d3n0fa2, d3n0fb2
        automated match to d1hxga1
    2. Domains for 3n0g:
      1. 2722875Domain d3n0ga1: 3n0g A:63-265 [213669]
        Other proteins in same PDB: d3n0ga2, d3n0gb2
        automated match to d1hxga1
        complexed with dst, mg
      2. 2722876Domain d3n0gb1: 3n0g B:63-265 [213671]
        Other proteins in same PDB: d3n0ga2, d3n0gb2
        automated match to d1hxga1
        complexed with dst, mg
  8. 2722877Salvia fruticosa [TaxId:268906] [225284] (1 PDB entry)
  9. 2722880Santalum album [TaxId:35974] [367258] (11 PDB entries)
    1. Domains for 5zzj:
      1. 2722894Domain d5zzja1: 5zzj A:39-241 [371772]
        Other proteins in same PDB: d5zzja2, d5zzjb2, d5zzjc2, d5zzjd2
        automated match to d2onha1
      2. 2722895Domain d5zzjb1: 5zzj B:39-241 [371774]
        Other proteins in same PDB: d5zzja2, d5zzjb2, d5zzjc2, d5zzjd2
        automated match to d2onha1
      3. 2722896Domain d5zzjc1: 5zzj C:39-241 [371788]
        Other proteins in same PDB: d5zzja2, d5zzjb2, d5zzjc2, d5zzjd2
        automated match to d2onha1
      4. 2722897Domain d5zzjd1: 5zzj D:39-241 [371761]
        Other proteins in same PDB: d5zzja2, d5zzjb2, d5zzjc2, d5zzjd2
        automated match to d2onha1
    2. Domain for 6a1d:
    3. Domain for 6a1e:
    4. Domain for 6a1i:
    5. Domains for 6a2a:
      1. 2722889Domain d6a2aa1: 6a2a A:32-236 [369497]
        Other proteins in same PDB: d6a2aa2, d6a2ab2
        automated match to d3lz9a1
      2. 2722890Domain d6a2ab1: 6a2a B:33-236 [369518]
        Other proteins in same PDB: d6a2aa2, d6a2ab2
        automated match to d3lz9a1
    6. Domains for 6a2c:
      1. Domain d6a2ca1: 6a2c A:31-236 [369634]
        Other proteins in same PDB: d6a2ca2, d6a2cb2
        automated match to d3lz9a1
        complexed with fpp, mg
      2. 2722885Domain d6a2cb1: 6a2c B:34-236 [369479]
        Other proteins in same PDB: d6a2ca2, d6a2cb2
        automated match to d3lz9a1
        complexed with fpp, mg
    7. Domains for 6a2d:
      1. Domain d6a2da1: 6a2d A:32-236 [369573]
        Other proteins in same PDB: d6a2da2, d6a2db2
        automated match to d3lz9a1
        complexed with 6r2, mg
      2. 2722887Domain d6a2db1: 6a2d B:34-236 [369553]
        Other proteins in same PDB: d6a2da2, d6a2db2
        automated match to d3lz9a1
        complexed with 6r2, mg
    8. Domain for 6a3x:
    9. Domain for 6k16:
    10. Domain for 6o9p:
    11. Domain for 6o9q:
  10. 2722898Thale cress (Arabidopsis thaliana) [TaxId:3702] [389707] (2 PDB entries)
    1. Domain for 7bzb:
    2. Domain for 7bzc:
  11. 2722901Thymus vulgaris [TaxId:49992] [280258] (1 PDB entry)
  12. 2722904Tobacco (Nicotiana tabacum) [TaxId:4097] [225865] (22 PDB entries)
    1. Domain for 3lz9:
    2. Domain for 3m00:
    3. Domain for 3m01:
    4. Domain for 3m02:
    5. Domain for 4rnq:
    6. Domain for 5dhi:
    7. Domain for 5dhk:
    8. Domain for 5ik0:
    9. Domain for 5ik6:
    10. Domain for 5ik9:
    11. Domain for 5ika:
    12. Domain for 5ikh:
    13. Domain for 5il3:
    14. Domain for 5il8:
    15. Domain for 5ild:
    16. Domain for 5ilh:
    17. Domain for 5ili:
    18. Domain for 5ilj:
    19. Domain for 5ilk:
    20. Domain for 5ily:
    21. Domain for 5ilz:
    22. Domain for 5im1:

More info for Protein automated matches from a.102.4.0: automated matches

Timeline for Protein automated matches from a.102.4.0: automated matches: