Species:

1. African malaria mosquito (Anopheles gambiae) [TaxId:7165] [226702] (1 PDB entry)

   • Domain for 4l11:

     • Domain d4l11a_: 4l11 A: [224546] automated match to d1q3ea_

2. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [233085] (1 PDB entry)

   • Domains for 3of1:

     1. Domain d3of1a1: 3of1 A:171-293 [233086] automated match to d1cx4a1 complexed with cmp

     2. Domain d3of1a2: 3of1 A:294-416 [233087] automated match to d1cx4a2 complexed with cmp

3. Carboxydothermus hydrogenoformans [TaxId:129958] [225203] (1 PDB entry)

   • Domains for 2fmy:

     1. Domain d2fmya1: 2fmy A:5-138 [204235] Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3 automated match to d1ft9a2 complexed with hem, imd

     2. Domain d2fmyb1: 2fmy B:1005-1138 [204237] Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3 automated match to d1ft9a2 complexed with hem, imd

     3. Domain d2fmyc1: 2fmy C:2005-2138 [204239] Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3 automated match to d1ft9a2 complexed with hem, imd

     4. Domain d2fmyd1: 2fmy D:3005-3138 [204241] Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3 automated match to d1ft9a2 complexed with hem, imd

4. Corynebacterium glutamicum [TaxId:1718] [226339] (2 PDB entries)

   1. Domains for 3r6s:

      1. Domain d3r6sa1: 3r6s A:3-147 [215597] Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2 automated match to d1g6na2 complexed with cmp, hez

      2. Domain d3r6sb1: 3r6s B:3-147 [215599] Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2 automated match to d1g6na2 complexed with cmp, hez

      3. Domain d3r6sc1: 3r6s C:3-147 [215601] Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2 automated match to d1g6na2 complexed with cmp, hez

      4. Domain d3r6sd1: 3r6s D:3-147 [215603] Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2 automated match to d1g6na2 complexed with cmp, hez

      5. Domain d3r6se1: 3r6s E:3-147 [215605] Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2 automated match to d1g6na2 complexed with cmp, hez

      6. Domain d3r6sf1: 3r6s F:3-147 [215607] Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2 automated match to d1g6na2 complexed with cmp, hez

   2. Domains for 4byy:

      1. Domain d4byya1: 4byy A:1-147 [257728] Other proteins in same PDB: d4byya2, d4byyb2 automated match to d3r6sa1 complexed with gol, po4

      2. Domain d4byyb1: 4byy B:3-147 [257727] Other proteins in same PDB: d4byya2, d4byyb2 automated match to d3r6sa1 complexed with gol, po4

5. Cow (Bos taurus) [TaxId:9913] [346265] (3 PDB entries)

   1. Domain for 3iia:

      • Domain d3iiaa_: 3iia A: [344786] automated match to d4z07e_ complexed with gol

   2. Domain for 3plq:

      • Domain d3plqa_: 3plq A: [344984] automated match to d4z07e_ complexed with rp2, zn

   3. Domains for 3pna:

      1. Domain d3pnaa_: 3pna A: [344985] automated match to d4z07e_ complexed with cmp, gol

      2. Domain d3pnab_: 3pna B: [344986] automated match to d4z07e_ complexed with cmp, gol

6. Euglena gracilis [TaxId:3039] [395605] (1 PDB entry)

   • Domains for 6rsx:

     1. Domain d6rsxa1: 6rsx A:131-267 [395606] automated match to d4jv4a1 complexed with cmp

     2. Domain d6rsxa2: 6rsx A:268-396 [395607] automated match to d4jv4a2 complexed with cmp

7. Human (Homo sapiens) [TaxId:9606] [256346] (16 PDB entries)

   1. Domains for 3ocp:

      1. Domain d3ocpa_: 3ocp A: [344972] automated match to d4z07e_ complexed with cmp

      2. Domain d3ocpb_: 3ocp B: [344973] automated match to d4z07e_ complexed with cmp

   2. Domains for 3od0:

      1. Domain d3od0a_: 3od0 A: [344974] automated match to d4z07e_ complexed with pcg

      2. Domain d3od0b_: 3od0 B: [344975] automated match to d4z07e_ complexed with pcg

   3. Domains for 3ogj:

      1. Domain d3ogja_: 3ogj A: [344976] automated match to d4z07e_ complexed with cmp, po4

      2. Domain d3ogjb_: 3ogj B: [344977] automated match to d4z07e_ complexed with cmp, po4

      3. Domain d3ogjc_: 3ogj C: [344978] automated match to d4z07e_ complexed with cmp, po4

      4. Domain d3ogjd_: 3ogj D: [344979] automated match to d4z07e_ complexed with cmp, po4

   4. Domain for 4ku7:

      • Domain d4ku7a_: 4ku7 A: [253445] automated match to d1u12b_ complexed with iod, pcg

   5. Domains for 4ku8:

      1. Domain d4ku8b_: 4ku8 B: [253446] Other proteins in same PDB: d4ku8c2 automated match to d1u12b_ complexed with gly

      2. Domain d4ku8c1: 4ku8 C:219-344 [253447] Other proteins in same PDB: d4ku8c2 automated match to d1u12b_ complexed with gly

   6. Domain for 4qxk:

      • Domain d4qxka_: 4qxk A: [260950] automated match to d4ku8c_ complexed with dod, na, pcg

   7. Domains for 4z07:

      1. Domain d4z07a1: 4z07 A:92-227 [316458] automated match to d4z07c1 complexed with ipa, pcg, so4

      2. Domain d4z07a2: 4z07 A:228-351 [316459] automated match to d4z07c2 complexed with ipa, pcg, so4

      3. Domain d4z07c1: 4z07 C:94-227 [315523] automated match to d3of1a1 complexed with ipa, pcg, so4

      4. Domain d4z07c2: 4z07 C:228-351 [315524] automated match to d3of1a2 complexed with ipa, pcg, so4

      5. Domain d4z07e_: 4z07 E: [316460] automated match to d5c8wa_ complexed with ipa, pcg, so4

   8. Domains for 5c6c:

      1. Domain d5c6ca_: 5c6c A: [312844] automated match to d4offa_ complexed with ca, cd, cmp, co, edo, na

      2. Domain d5c6cb_: 5c6c B: [312686] automated match to d4offa_ complexed with ca, cd, cmp, co, edo, na

   9. Domains for 5c8w:

      1. Domain d5c8wa_: 5c8w A: [312754] automated match to d4offa_ complexed with mla, na, pcg

      2. Domain d5c8wb_: 5c8w B: [312713] automated match to d4offa_ complexed with mla, na, pcg

      3. Domain d5c8wc_: 5c8w C: [312743] automated match to d4offa_ complexed with mla, na, pcg

      4. Domain d5c8wd_: 5c8w D: [312803] automated match to d4offa_ complexed with mla, na, pcg

      5. Domain d5c8we_: 5c8w E: [312845] automated match to d4offa_ complexed with mla, na, pcg

      6. Domain d5c8wf_: 5c8w F: [312748] automated match to d4offa_ complexed with mla, na, pcg

   10. Domains for 5j48:

       1. Domain d5j48a1: 5j48 A:219-351 [332941] Other proteins in same PDB: d5j48a2, d5j48b2 automated match to d4ku7a_ complexed with 6fw, ca, edo, na

       2. Domain d5j48b1: 5j48 B:219-343 [332893] Other proteins in same PDB: d5j48a2, d5j48b2 automated match to d4ku7a_ complexed with 6fw, ca, edo, na

   11. Domain for 5jax:

       • Domain d5jaxa_: 5jax A: [333270] automated match to d4ku7a_ complexed with 6j7, ca, na

   12. Domain for 5jd7:

       • Domain d5jd7a_: 5jd7 A: [337485] automated match to d4ku7a_ complexed with 6jr

   13. Domain for 5kjx:

       • Domain d5kjxa_: 5kjx A: [335997] automated match to d4ku7a_ complexed with cmp

   14. Domain for 5kjy:

       • Domain d5kjya_: 5kjy A: [336015] automated match to d4ku7a_ complexed with cmp; mutant

   15. Domain for 5kjz:

       • Domain d5kjza1: 5kjz A:234-381 [336011] Other proteins in same PDB: d5kjza2 automated match to d4ku7a_ complexed with gol, pcg; mutant

   16. Domain for 5l0n:

       • Domain d5l0na_: 5l0n A: [337170] automated match to d4ku7a_ complexed with 6za, ca, edo, so4

8. Malaria parasite (Plasmodium falciparum) [TaxId:5833] [311407] (3 PDB entries)

   1. Domain for 4off:

      • Domain d4offa_: 4off A: [307857] automated match to d4ku8c_ complexed with so4

   2. Domain for 4ofg:

      • Domain d4ofga_: 4ofg A: [345370] automated match to d5kjxa_ complexed with eoh, n2p, pcg, so4

   3. Domain for 5e16:

      • Domain d5e16a_: 5e16 A: [345595] automated match to d4z07e_ complexed with pcg

9. Mycobacterium tuberculosis [TaxId:1773] [231918] (4 PDB entries)

   1. Domains for 3d0s:

      1. Domain d3d0sa1: 3d0s A:1-144 [231920] Other proteins in same PDB: d3d0sa2, d3d0sb2, d3d0sb3 automated match to d3r6sf1 complexed with cl

      2. Domain d3d0sb1: 3d0s B:1-144 [231919] Other proteins in same PDB: d3d0sa2, d3d0sb2, d3d0sb3 automated match to d3r6sf1 complexed with cl

   2. Domains for 3i54:

      1. Domain d3i54a1: 3i54 A:1-144 [232550] Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3 automated match to d3r6sf1 protein/DNA complex; complexed with cmp

      2. Domain d3i54b1: 3i54 B:1-144 [232548] Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3 automated match to d3r6sf1 protein/DNA complex; complexed with cmp

      3. Domain d3i54c1: 3i54 C:18-144 [239347] Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3 automated match to d3i54b1 protein/DNA complex; complexed with cmp

      4. Domain d3i54d1: 3i54 D:1-144 [239349] Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3 automated match to d3i54b1 protein/DNA complex; complexed with cmp

   3. Domains for 3i59:

      1. Domain d3i59a1: 3i59 A:1-144 [246714] Other proteins in same PDB: d3i59a2, d3i59a3, d3i59b2, d3i59b3 automated match to d3i54b1 protein/DNA complex; complexed with cl, n6r, n6s

      2. Domain d3i59b1: 3i59 B:1-141 [246716] Other proteins in same PDB: d3i59a2, d3i59a3, d3i59b2, d3i59b3 automated match to d3i54b1 protein/DNA complex; complexed with cl, n6r, n6s

   4. Domains for 4a2u:

      1. Domain d4a2ua1: 4a2u A:1-144 [250900] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

      2. Domain d4a2ub1: 4a2u B:1-144 [250902] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

      3. Domain d4a2uc1: 4a2u C:1-144 [250904] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

      4. Domain d4a2ud1: 4a2u D:17-144 [250906] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

      5. Domain d4a2ue1: 4a2u E:1-144 [250908] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

      6. Domain d4a2uf1: 4a2u F:1-144 [250910] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

      7. Domain d4a2ug1: 4a2u G:1-144 [250912] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

      8. Domain d4a2uh1: 4a2u H:1-144 [250914] Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3 automated match to d3d0sa1 complexed with cmp

10. Mycobacterium tuberculosis [TaxId:83332] [232366] (2 PDB entries)

    1. Domains for 3h3u:

       1. Domain d3h3ua1: 3h3u A:2-144 [232368] Other proteins in same PDB: d3h3ua2, d3h3ub2 automated match to d3r6sf1 complexed with cmp, so4

       2. Domain d3h3ub1: 3h3u B:1-144 [232367] Other proteins in same PDB: d3h3ua2, d3h3ub2 automated match to d3r6sf1 complexed with cmp, so4

    2. Domains for 3mzh:

       1. Domain d3mzha1: 3mzh A:1-144 [232961] Other proteins in same PDB: d3mzha2, d3mzha3, d3mzhb2, d3mzhb3 automated match to d3r6sf1 protein/DNA complex; complexed with cmp

       2. Domain d3mzhb1: 3mzh B:1-144 [232960] Other proteins in same PDB: d3mzha2, d3mzha3, d3mzhb2, d3mzhb3 automated match to d3r6sf1 protein/DNA complex; complexed with cmp

11. Plasmodium falciparum [TaxId:36329] [346266] (2 PDB entries)

    1. Domains for 5k8s:

       1. Domain d5k8sa1: 5k8s A:297-439 [345755] Other proteins in same PDB: d5k8sa2, d5k8sb2 automated match to d5kjxa_ complexed with cmp

       2. Domain d5k8sb1: 5k8s B:297-441 [345757] Other proteins in same PDB: d5k8sa2, d5k8sb2 automated match to d5kjxa_ complexed with cmp

    2. Domains for 5t3n:

       1. Domain d5t3na1: 5t3n A:297-439 [345839] Other proteins in same PDB: d5t3na2, d5t3nb2 automated match to d5kjxa_ complexed with 75g, iod

       2. Domain d5t3nb1: 5t3n B:297-439 [345841] Other proteins in same PDB: d5t3na2, d5t3nb2 automated match to d5kjxa_ complexed with 75g, iod

12. Pseudomonas aeruginosa [TaxId:287] [267817] (1 PDB entry)

    • Domains for 2z69:

      1. Domain d2z69a1: 2z69 A:1-150 [264628] Other proteins in same PDB: d2z69a2 automated match to d2pqqa_

      2. Domain d2z69b_: 2z69 B: [264629] Other proteins in same PDB: d2z69a2 automated match to d2pqqa_

      3. Domain d2z69c_: 2z69 C: [264630] Other proteins in same PDB: d2z69a2 automated match to d2pqqa_

13. Spirochaeta thermophila [TaxId:665571] [311368] (2 PDB entries)

    1. Domains for 4d7s:

       1. Domain d4d7sa_: 4d7s A: [307242] automated match to d2ptma_ complexed with pcg

       2. Domain d4d7sb_: 4d7s B: [307243] automated match to d2ptma_ complexed with pcg

    2. Domains for 4d7t:

       1. Domain d4d7ta_: 4d7t A: [307244] automated match to d2ptma_ complexed with cmp

       2. Domain d4d7tb_: 4d7t B: [307245] automated match to d2ptma_ complexed with cmp

14. Streptomyces coelicolor [TaxId:100226] [255548] (1 PDB entry)

    • Domains for 2pqq:

      1. Domain d2pqqa1: 2pqq A:1-145 [243493] Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2 automated match to d3i54a1 complexed with fmt

      2. Domain d2pqqb1: 2pqq B:1-145 [243494] Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2 automated match to d3i54a1 complexed with fmt

      3. Domain d2pqqc1: 2pqq C:2-145 [243495] Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2 automated match to d3i54a1 complexed with fmt

      4. Domain d2pqqd1: 2pqq D:3-145 [243496] Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2 automated match to d3i54a1 complexed with fmt

15. Toxoplasma gondii [TaxId:5811] [316116] (1 PDB entry)

    • Domains for 5j3u:

      1. Domain d5j3ua1: 5j3u A:158-278 [316824] Other proteins in same PDB: d5j3ua3 automated match to d4jv4a1 complexed with cmp, gol

      2. Domain d5j3ua2: 5j3u A:279-405 [316825] Other proteins in same PDB: d5j3ua3 automated match to d4jv4a2 complexed with cmp, gol

16. Trypanosoma brucei [TaxId:185431] [372827] (2 PDB entries)

    1. Domains for 6flo:

       1. Domain d6floa1: 6flo A:211-354 [372844] automated match to d4jv4a1 complexed with gol, nos

       2. Domain d6floa2: 6flo A:355-489 [372845] automated match to d4jv4a2 complexed with gol, nos

       3. Domain d6flob1: 6flo B:219-354 [372828] automated match to d4jv4a1 complexed with gol, nos

       4. Domain d6flob2: 6flo B:355-490 [372830] automated match to d4jv4a2 complexed with gol, nos

    2. Domains for 6h4g:

       1. Domain d6h4ga1: 6h4g A:216-354 [372893] automated match to d4jv4a1 complexed with cmp, nos; mutant

       2. Domain d6h4ga2: 6h4g A:355-489 [372894] automated match to d4jv4a2 complexed with cmp, nos; mutant

       3. Domain d6h4gb1: 6h4g B:219-354 [372858] automated match to d4jv4a1 complexed with cmp, nos; mutant

       4. Domain d6h4gb2: 6h4g B:355-490 [372859] automated match to d4jv4a2 complexed with cmp, nos; mutant

17. Xanthomonas campestris [TaxId:340] [225796] (1 PDB entry)

    • Domains for 3iwz:

      1. Domain d3iwza1: 3iwz A:22-158 [211989] Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2 automated match to d2oz6a2

      2. Domain d3iwzb1: 3iwz B:22-158 [211991] Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2 automated match to d2oz6a2

      3. Domain d3iwzc1: 3iwz C:23-158 [211993] Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2 automated match to d2oz6a2

      4. Domain d3iwzd1: 3iwz D:22-158 [211995] Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2 automated match to d2oz6a2

18. Zebrafish (Danio rerio) [TaxId:7955] [233796] (3 PDB entries)

    1. Domains for 3ukn:

       1. Domain d3ukna_: 3ukn A: [233797] automated match to d4l11a_

       2. Domain d3uknb_: 3ukn B: [233798] automated match to d4l11a_

       3. Domain d3uknc_: 3ukn C: [233799] automated match to d4l11a_

    2. Domains for 3ukt:

       1. Domain d3ukta_: 3ukt A: [250215] automated match to d3ukna_

       2. Domain d3uktb_: 3ukt B: [250216] automated match to d3uknb_

       3. Domain d3uktc_: 3ukt C: [250217] automated match to d3ukna_

       4. Domain d3uktd_: 3ukt D: [250218] automated match to d3ukna_

    3. Domains for 3ukv:

       1. Domain d3ukva_: 3ukv A: [250219] automated match to d3ukna_

       2. Domain d3ukvb_: 3ukv B: [250220] automated match to d3uknb_

       3. Domain d3ukvc_: 3ukv C: [250221] automated match to d3ukna_

More info for Protein automated matches from b.82.3.0: automated matches

Timeline for Protein automated matches from b.82.3.0: automated matches:

• Protein automated matches from b.82.3.0: automated matches first appeared in SCOPe 2.03
  
• Protein automated matches from b.82.3.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from b.82.3.0: automated matches appears in the current release, SCOPe 2.08