SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class b: All beta proteins [48724] (174 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.3: cAMP-binding domain-like [51206] (4 families)
Family b.82.3.0: automated matches [227198] (1 protein)
not a true family
Protein automated matches [226927] (8 species)
not a true protein

Species:

African malaria mosquito (Anopheles gambiae) [TaxId:7165] [226702] (1 PDB entry)
- Domain for 4l11:
  - Domain d4l11a_: 4l11 A: [224546]
    automated match to d1q3ea_
Carboxydothermus hydrogenoformans [TaxId:129958] [225203] (1 PDB entry)
- Domains for 2fmy:
  1. Domain d2fmya1: 2fmy A:2-138 [204235]
    Other proteins in same PDB: d2fmya2, d2fmyb2, d2fmyc2, d2fmyd2
    automated match to d1ft9a2
    complexed with hem, imd
  2. Domain d2fmyb1: 2fmy B:1002-1138 [204237]
    Other proteins in same PDB: d2fmya2, d2fmyb2, d2fmyc2, d2fmyd2
    automated match to d1ft9a2
    complexed with hem, imd
  3. Domain d2fmyc1: 2fmy C:2002-2138 [204239]
    Other proteins in same PDB: d2fmya2, d2fmyb2, d2fmyc2, d2fmyd2
    automated match to d1ft9a2
    complexed with hem, imd
  4. Domain d2fmyd1: 2fmy D:3002-3138 [204241]
    Other proteins in same PDB: d2fmya2, d2fmyb2, d2fmyc2, d2fmyd2
    automated match to d1ft9a2
    complexed with hem, imd
Corynebacterium glutamicum [TaxId:1718] [226339] (1 PDB entry)
- Domains for 3r6s:
  1. Domain d3r6sa1: 3r6s A:3-147 [215597]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  2. Domain d3r6sb1: 3r6s B:3-147 [215599]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  3. Domain d3r6sc1: 3r6s C:3-147 [215601]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  4. Domain d3r6sd1: 3r6s D:3-147 [215603]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  5. Domain d3r6se1: 3r6s E:3-147 [215605]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  6. Domain d3r6sf1: 3r6s F:3-147 [215607]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
Danio rerio [TaxId:7955] [233796] (1 PDB entry)
- Domains for 3ukn:
  1. Domain d3ukna_: 3ukn A: [233797]
    automated match to d4l11a_
  2. Domain d3uknb_: 3ukn B: [233798]
    automated match to d4l11a_
  3. Domain d3uknc_: 3ukn C: [233799]
    automated match to d4l11a_
Mycobacterium tuberculosis [TaxId:1773] [231918] (2 PDB entries)
1. Domains for 3d0s:
  1. Domain d3d0sa1: 3d0s A:1-144 [231920]
    Other proteins in same PDB: d3d0sa2, d3d0sb2
    automated match to d3r6sf1
    complexed with cl
  2. Domain d3d0sb1: 3d0s B:991-144 [231919]
    Other proteins in same PDB: d3d0sa2, d3d0sb2
    automated match to d3r6sf1
    complexed with cl
2. Domains for 3i54:
  1. Domain d3i54a1: 3i54 A:-5-144 [232550]
    Other proteins in same PDB: d3i54b2
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
  2. Domain d3i54b1: 3i54 B:-6-144 [232548]
    Other proteins in same PDB: d3i54b2
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
Mycobacterium tuberculosis [TaxId:83332] [232366] (2 PDB entries)
1. Domains for 3h3u:
  1. Domain d3h3ua1: 3h3u A:2-144 [232368]
    Other proteins in same PDB: d3h3ua2, d3h3ub2
    automated match to d3r6sf1
    complexed with cmp, so4
  2. Domain d3h3ub1: 3h3u B:1-144 [232367]
    Other proteins in same PDB: d3h3ua2, d3h3ub2
    automated match to d3r6sf1
    complexed with cmp, so4
2. Domains for 3mzh:
  1. Domain d3mzha1: 3mzh A:0-144 [232961]
    Other proteins in same PDB: d3mzha2, d3mzhb2
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
  2. Domain d3mzhb1: 3mzh B:0-144 [232960]
    Other proteins in same PDB: d3mzha2, d3mzhb2
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
Saccharomyces cerevisiae [TaxId:4932] [233085] (1 PDB entry)
- Domains for 3of1:
  1. Domain d3of1a1: 3of1 A:171-293 [233086]
    automated match to d1cx4a1
    complexed with cmp
  2. Domain d3of1a2: 3of1 A:294-416 [233087]
    automated match to d1cx4a2
    complexed with cmp
Xanthomonas campestris [TaxId:340] [225796] (1 PDB entry)
- Domains for 3iwz:
  1. Domain d3iwza1: 3iwz A:22-158 [211989]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2
  2. Domain d3iwzb1: 3iwz B:22-158 [211991]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2
  3. Domain d3iwzc1: 3iwz C:23-158 [211993]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2
  4. Domain d3iwzd1: 3iwz D:22-158 [211995]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2

More info for Protein automated matches from b.82.3.0: automated matches

Timeline for Protein automated matches from b.82.3.0: automated matches:

Protein automated matches from b.82.3.0: automated matches is new in SCOPe 2.03-stable
Protein automated matches from b.82.3.0: automated matches appears in SCOPe 2.04
Protein automated matches from b.82.3.0: automated matches appears in the current release, SCOPe 2.08