Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2405483Superfamily b.82.3: cAMP-binding domain-like [51206] (4 families) (S)
  5. 2405722Family b.82.3.0: automated matches [227198] (1 protein)
    not a true family
  6. 2405723Protein automated matches [226927] (16 species)
    not a true protein

Species:

  1. 2405724African malaria mosquito (Anopheles gambiae) [TaxId:7165] [226702] (1 PDB entry)
  2. 2405726Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [233085] (1 PDB entry)
  3. 2405729Carboxydothermus hydrogenoformans [TaxId:129958] [225203] (1 PDB entry)
  4. 2405734Corynebacterium glutamicum [TaxId:1718] [226339] (2 PDB entries)
    1. Domains for 3r6s:
      1. 2405735Domain d3r6sa1: 3r6s A:3-147 [215597]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      2. 2405736Domain d3r6sb1: 3r6s B:3-147 [215599]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      3. 2405737Domain d3r6sc1: 3r6s C:3-147 [215601]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      4. 2405738Domain d3r6sd1: 3r6s D:3-147 [215603]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      5. 2405739Domain d3r6se1: 3r6s E:3-147 [215605]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      6. 2405740Domain d3r6sf1: 3r6s F:3-147 [215607]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
    2. Domains for 4byy:
      1. 2405741Domain d4byya1: 4byy A:1-147 [257728]
        Other proteins in same PDB: d4byya2, d4byyb2
        automated match to d3r6sa1
        complexed with gol, po4
      2. 2405742Domain d4byyb1: 4byy B:3-147 [257727]
        Other proteins in same PDB: d4byya2, d4byyb2
        automated match to d3r6sa1
        complexed with gol, po4
  5. 2405743Cow (Bos taurus) [TaxId:9913] [346265] (3 PDB entries)
    1. Domain for 3iia:
    2. Domain for 3plq:
    3. Domains for 3pna:
      1. 2405744Domain d3pnaa_: 3pna A: [344985]
        automated match to d4z07e_
        complexed with cmp, gol
      2. 2405745Domain d3pnab_: 3pna B: [344986]
        automated match to d4z07e_
        complexed with cmp, gol
  6. 2405748Human (Homo sapiens) [TaxId:9606] [256346] (16 PDB entries)
    1. Domains for 3ocp:
      1. 2405763Domain d3ocpa_: 3ocp A: [344972]
        automated match to d4z07e_
        complexed with cmp
      2. 2405764Domain d3ocpb_: 3ocp B: [344973]
        automated match to d4z07e_
        complexed with cmp
    2. Domains for 3od0:
      1. 2405774Domain d3od0a_: 3od0 A: [344974]
        automated match to d4z07e_
        complexed with pcg
      2. 2405775Domain d3od0b_: 3od0 B: [344975]
        automated match to d4z07e_
        complexed with pcg
    3. Domains for 3ogj:
      1. 2405770Domain d3ogja_: 3ogj A: [344976]
        automated match to d4z07e_
        complexed with cmp, po4
      2. 2405771Domain d3ogjb_: 3ogj B: [344977]
        automated match to d4z07e_
        complexed with cmp, po4
      3. 2405772Domain d3ogjc_: 3ogj C: [344978]
        automated match to d4z07e_
        complexed with cmp, po4
      4. 2405773Domain d3ogjd_: 3ogj D: [344979]
        automated match to d4z07e_
        complexed with cmp, po4
    4. Domain for 4ku7:
    5. Domains for 4ku8:
      1. 2405766Domain d4ku8b_: 4ku8 B: [253446]
        Other proteins in same PDB: d4ku8c2
        automated match to d1u12b_
        complexed with gly
      2. 2405767Domain d4ku8c1: 4ku8 C:219-344 [253447]
        Other proteins in same PDB: d4ku8c2
        automated match to d1u12b_
        complexed with gly
    6. Domain for 4qxk:
    7. Domains for 4z07:
      1. 2405777Domain d4z07a1: 4z07 A:92-227 [316458]
        automated match to d4z07c1
        complexed with ipa, pcg, so4
      2. 2405778Domain d4z07a2: 4z07 A:228-351 [316459]
        automated match to d4z07c2
        complexed with ipa, pcg, so4
      3. 2405779Domain d4z07c1: 4z07 C:94-227 [315523]
        automated match to d3of1a1
        complexed with ipa, pcg, so4
      4. 2405780Domain d4z07c2: 4z07 C:228-351 [315524]
        automated match to d3of1a2
        complexed with ipa, pcg, so4
      5. 2405781Domain d4z07e_: 4z07 E: [316460]
        automated match to d5c8wa_
        complexed with ipa, pcg, so4
    8. Domains for 5c6c:
      1. 2405768Domain d5c6ca_: 5c6c A: [312844]
        automated match to d4offa_
        complexed with ca, cd, cmp, co, edo, na
      2. 2405769Domain d5c6cb_: 5c6c B: [312686]
        automated match to d4offa_
        complexed with ca, cd, cmp, co, edo, na
    9. Domains for 5c8w:
      1. 2405756Domain d5c8wa_: 5c8w A: [312754]
        automated match to d4offa_
        complexed with mla, na, pcg
      2. 2405757Domain d5c8wb_: 5c8w B: [312713]
        automated match to d4offa_
        complexed with mla, na, pcg
      3. 2405758Domain d5c8wc_: 5c8w C: [312743]
        automated match to d4offa_
        complexed with mla, na, pcg
      4. 2405759Domain d5c8wd_: 5c8w D: [312803]
        automated match to d4offa_
        complexed with mla, na, pcg
      5. 2405760Domain d5c8we_: 5c8w E: [312845]
        automated match to d4offa_
        complexed with mla, na, pcg
      6. 2405761Domain d5c8wf_: 5c8w F: [312748]
        automated match to d4offa_
        complexed with mla, na, pcg
    10. Domains for 5j48:
      1. 2405752Domain d5j48a1: 5j48 A:219-351 [332941]
        Other proteins in same PDB: d5j48a2, d5j48b2
        automated match to d4ku7a_
        complexed with 6fw, ca, edo, na
      2. 2405753Domain d5j48b1: 5j48 B:219-343 [332893]
        Other proteins in same PDB: d5j48a2, d5j48b2
        automated match to d4ku7a_
        complexed with 6fw, ca, edo, na
    11. Domain for 5jax:
    12. Domain for 5jd7:
    13. Domain for 5kjx:
    14. Domain for 5kjy:
    15. Domain for 5kjz:
    16. Domain for 5l0n:
  7. 2405782Malaria parasite (Plasmodium falciparum) [TaxId:5833] [311407] (3 PDB entries)
    1. Domain for 4off:
    2. Domain for 4ofg:
    3. Domain for 5e16:
  8. 2405786Mycobacterium tuberculosis [TaxId:1773] [231918] (4 PDB entries)
    1. Domains for 3d0s:
      1. 2405787Domain d3d0sa1: 3d0s A:1-144 [231920]
        Other proteins in same PDB: d3d0sa2, d3d0sb2, d3d0sb3
        automated match to d3r6sf1
        complexed with cl
      2. 2405788Domain d3d0sb1: 3d0s B:1-144 [231919]
        Other proteins in same PDB: d3d0sa2, d3d0sb2, d3d0sb3
        automated match to d3r6sf1
        complexed with cl
    2. Domains for 3i54:
      1. 2405797Domain d3i54a1: 3i54 A:1-144 [232550]
        Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
      2. 2405798Domain d3i54b1: 3i54 B:1-144 [232548]
        Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
      3. 2405799Domain d3i54c1: 3i54 C:18-144 [239347]
        Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
        automated match to d3i54b1
        protein/DNA complex; complexed with cmp
      4. 2405800Domain d3i54d1: 3i54 D:1-144 [239349]
        Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
        automated match to d3i54b1
        protein/DNA complex; complexed with cmp
    3. Domains for 3i59:
      1. 2405801Domain d3i59a1: 3i59 A:1-144 [246714]
        Other proteins in same PDB: d3i59a2, d3i59a3, d3i59b2, d3i59b3
        automated match to d3i54b1
        protein/DNA complex; complexed with cl, n6r, n6s
      2. 2405802Domain d3i59b1: 3i59 B:1-141 [246716]
        Other proteins in same PDB: d3i59a2, d3i59a3, d3i59b2, d3i59b3
        automated match to d3i54b1
        protein/DNA complex; complexed with cl, n6r, n6s
    4. Domains for 4a2u:
      1. 2405789Domain d4a2ua1: 4a2u A:1-144 [250900]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
      2. 2405790Domain d4a2ub1: 4a2u B:1-144 [250902]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
      3. 2405791Domain d4a2uc1: 4a2u C:1-144 [250904]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
      4. 2405792Domain d4a2ud1: 4a2u D:17-144 [250906]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
      5. 2405793Domain d4a2ue1: 4a2u E:1-144 [250908]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
      6. 2405794Domain d4a2uf1: 4a2u F:1-144 [250910]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
      7. 2405795Domain d4a2ug1: 4a2u G:1-144 [250912]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
      8. 2405796Domain d4a2uh1: 4a2u H:1-144 [250914]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
        automated match to d3d0sa1
        complexed with cmp
  9. 2405803Mycobacterium tuberculosis [TaxId:83332] [232366] (2 PDB entries)
    1. Domains for 3h3u:
      1. 2405804Domain d3h3ua1: 3h3u A:2-144 [232368]
        Other proteins in same PDB: d3h3ua2, d3h3ub2
        automated match to d3r6sf1
        complexed with cmp, so4
      2. 2405805Domain d3h3ub1: 3h3u B:1-144 [232367]
        Other proteins in same PDB: d3h3ua2, d3h3ub2
        automated match to d3r6sf1
        complexed with cmp, so4
    2. Domains for 3mzh:
      1. 2405806Domain d3mzha1: 3mzh A:1-144 [232961]
        Other proteins in same PDB: d3mzha2, d3mzha3, d3mzhb2, d3mzhb3
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
      2. 2405807Domain d3mzhb1: 3mzh B:1-144 [232960]
        Other proteins in same PDB: d3mzha2, d3mzha3, d3mzhb2, d3mzhb3
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
  10. 2405808Plasmodium falciparum [TaxId:36329] [346266] (2 PDB entries)
    1. Domains for 5k8s:
      1. 2405809Domain d5k8sa1: 5k8s A:297-439 [345755]
        Other proteins in same PDB: d5k8sa2, d5k8sb2
        automated match to d5kjxa_
        complexed with cmp
      2. 2405810Domain d5k8sb1: 5k8s B:297-441 [345757]
        Other proteins in same PDB: d5k8sa2, d5k8sb2
        automated match to d5kjxa_
        complexed with cmp
    2. Domains for 5t3n:
      1. 2405811Domain d5t3na1: 5t3n A:297-439 [345839]
        Other proteins in same PDB: d5t3na2, d5t3nb2
        automated match to d5kjxa_
        complexed with 75g, iod
      2. 2405812Domain d5t3nb1: 5t3n B:297-439 [345841]
        Other proteins in same PDB: d5t3na2, d5t3nb2
        automated match to d5kjxa_
        complexed with 75g, iod
  11. 2405813Pseudomonas aeruginosa [TaxId:287] [267817] (1 PDB entry)
  12. 2405817Spirochaeta thermophila [TaxId:665571] [311368] (2 PDB entries)
    1. Domains for 4d7s:
      1. 2405818Domain d4d7sa_: 4d7s A: [307242]
        automated match to d2ptma_
        complexed with pcg
      2. 2405819Domain d4d7sb_: 4d7s B: [307243]
        automated match to d2ptma_
        complexed with pcg
    2. Domains for 4d7t:
      1. 2405820Domain d4d7ta_: 4d7t A: [307244]
        automated match to d2ptma_
        complexed with cmp
      2. 2405821Domain d4d7tb_: 4d7t B: [307245]
        automated match to d2ptma_
        complexed with cmp
  13. 2405822Streptomyces coelicolor [TaxId:100226] [255548] (1 PDB entry)
  14. 2405827Toxoplasma gondii [TaxId:5811] [316116] (1 PDB entry)
  15. 2405830Xanthomonas campestris [TaxId:340] [225796] (1 PDB entry)
  16. 2405835Zebrafish (Danio rerio) [TaxId:7955] [233796] (3 PDB entries)
    1. Domains for 3ukn:
      1. 2405836Domain d3ukna_: 3ukn A: [233797]
        automated match to d4l11a_
      2. 2405837Domain d3uknb_: 3ukn B: [233798]
        automated match to d4l11a_
      3. 2405838Domain d3uknc_: 3ukn C: [233799]
        automated match to d4l11a_
    2. Domains for 3ukt:
      1. 2405839Domain d3ukta_: 3ukt A: [250215]
        automated match to d3ukna_
      2. 2405840Domain d3uktb_: 3ukt B: [250216]
        automated match to d3uknb_
      3. 2405841Domain d3uktc_: 3ukt C: [250217]
        automated match to d3ukna_
      4. 2405842Domain d3uktd_: 3ukt D: [250218]
        automated match to d3ukna_
    3. Domains for 3ukv:
      1. 2405843Domain d3ukva_: 3ukv A: [250219]
        automated match to d3ukna_
      2. 2405844Domain d3ukvb_: 3ukv B: [250220]
        automated match to d3uknb_
      3. 2405845Domain d3ukvc_: 3ukv C: [250221]
        automated match to d3ukna_

More info for Protein automated matches from b.82.3.0: automated matches

Timeline for Protein automated matches from b.82.3.0: automated matches: