Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2435650Fold c.14: ClpP/crotonase [52095] (1 superfamily)
    core: 4 turns of (beta-beta-alpha)n superhelix
  4. 2435651Superfamily c.14.1: ClpP/crotonase [52096] (5 families) (S)
  5. 2436399Family c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain [89572] (7 proteins)
    Pfam PF01039
    the active site is formed by two different homologous subunits or domains of this fold
  6. 2436561Protein automated matches [226926] (3 species)
    not a true protein

Species:

  1. 2436562Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225864] (7 PDB entries)
    1. Domains for 3h0j:
      1. 2436563Domain d3h0ja1: 3h0j A:1482-1814 [210758]
        automated match to d1uyrb1
        complexed with b36
      2. 2436564Domain d3h0ja2: 3h0j A:1815-2195 [210759]
        automated match to d1od2a2
        complexed with b36
      3. 2436565Domain d3h0jb1: 3h0j B:1482-1814 [210760]
        automated match to d1uyrb1
        complexed with b36
      4. 2436566Domain d3h0jb2: 3h0j B:1815-2189 [210761]
        automated match to d1od2a2
        complexed with b36
      5. 2436567Domain d3h0jc1: 3h0j C:1492-1814 [210762]
        automated match to d1uyrb1
        complexed with b36
      6. 2436568Domain d3h0jc2: 3h0j C:1815-2189 [210763]
        automated match to d1od2a2
        complexed with b36
    2. Domains for 3h0q:
      1. 2436583Domain d3h0qa1: 3h0q A:1482-1814 [210764]
        automated match to d1uyrb1
        complexed with b37
      2. 2436584Domain d3h0qa2: 3h0q A:1815-2195 [210765]
        automated match to d1od2a2
        complexed with b37
      3. 2436585Domain d3h0qb1: 3h0q B:1482-1814 [210766]
        automated match to d1uyrb1
        complexed with b37
      4. 2436586Domain d3h0qb2: 3h0q B:1815-2189 [210767]
        automated match to d1od2a2
        complexed with b37
      5. 2436587Domain d3h0qc1: 3h0q C:1492-1814 [210768]
        automated match to d1uyrb1
        complexed with b37
      6. 2436588Domain d3h0qc2: 3h0q C:1815-2189 [210769]
        automated match to d1od2a2
        complexed with b37
    3. Domains for 3h0s:
      1. 2436577Domain d3h0sa1: 3h0s A:1480-1814 [210770]
        automated match to d1uyrb1
        complexed with b38, so4
      2. 2436578Domain d3h0sa2: 3h0s A:1815-2195 [210771]
        automated match to d1od2a2
        complexed with b38, so4
      3. 2436579Domain d3h0sb1: 3h0s B:1480-1814 [210772]
        automated match to d1uyrb1
        complexed with b38, so4
      4. 2436580Domain d3h0sb2: 3h0s B:1815-2189 [210773]
        automated match to d1od2a2
        complexed with b38, so4
      5. 2436581Domain d3h0sc1: 3h0s C:1492-1814 [210774]
        automated match to d1uyrb1
        complexed with b38, so4
      6. 2436582Domain d3h0sc2: 3h0s C:1815-2192 [210775]
        automated match to d1od2a2
        complexed with b38, so4
    4. Domains for 3pgq:
      1. 2436595Domain d3pgqa1: 3pgq A:1480-1814 [214770]
        automated match to d1uyrb1
        complexed with gy3
      2. 2436596Domain d3pgqa2: 3pgq A:1815-2195 [214771]
        automated match to d1od2a2
        complexed with gy3
      3. 2436597Domain d3pgqb1: 3pgq B:1480-1814 [214772]
        automated match to d1uyrb1
        complexed with gy3
      4. 2436598Domain d3pgqb2: 3pgq B:1815-2192 [214773]
        automated match to d1od2a2
        complexed with gy3
      5. 2436599Domain d3pgqc1: 3pgq C:1491-1814 [214774]
        automated match to d1uyrb1
        complexed with gy3
      6. 2436600Domain d3pgqc2: 3pgq C:1815-2193 [214775]
        automated match to d1od2a2
        complexed with gy3
    5. Domains for 5ctb:
      1. 2436571Domain d5ctba1: 5ctb A:1480-1814 [278059]
        automated match to d1uyta1
        complexed with 57j, so4
      2. 2436572Domain d5ctba2: 5ctb A:1815-2195 [278060]
        automated match to d1uyra2
        complexed with 57j, so4
      3. 2436573Domain d5ctbb1: 5ctb B:1480-1814 [278061]
        automated match to d1uyta1
        complexed with 57j, so4
      4. 2436574Domain d5ctbb2: 5ctb B:1815-2189 [278062]
        automated match to d1uyra2
        complexed with 57j, so4
      5. 2436575Domain d5ctbc1: 5ctb C:1493-1814 [278067]
        automated match to d1uyta1
        complexed with 57j, so4
      6. 2436576Domain d5ctbc2: 5ctb C:1815-2192 [278068]
        automated match to d1uyra2
        complexed with 57j, so4
    6. Domains for 5ctc:
      1. 2436589Domain d5ctca1: 5ctc A:1480-1814 [278065]
        automated match to d1uyta1
        complexed with 57k, so4
      2. 2436590Domain d5ctca2: 5ctc A:1815-2193 [278066]
        automated match to d1uyra2
        complexed with 57k, so4
      3. 2436591Domain d5ctcb1: 5ctc B:1481-1814 [278063]
        automated match to d1uyta1
        complexed with 57k, so4
      4. 2436592Domain d5ctcb2: 5ctc B:1815-2189 [278064]
        automated match to d1uyra2
        complexed with 57k, so4
      5. 2436593Domain d5ctcc1: 5ctc C:1493-1814 [278069]
        automated match to d1uyta1
        complexed with 57k, so4
      6. 2436594Domain d5ctcc2: 5ctc C:1815-2192 [278070]
        automated match to d1uyra2
        complexed with 57k, so4
    7. Domains for 5cte:
      1. 2436569Domain d5ctec1: 5cte C:1492-1814 [278057]
        automated match to d1uyta1
        complexed with 57l, so4
      2. 2436570Domain d5ctec2: 5cte C:1815-2233 [278058]
        automated match to d1uyra2
        complexed with 57l, so4
  2. 2436601Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [226234] (6 PDB entries)
    1. Domains for 3tv5:
      1. 2436612Domain d3tv5a1: 3tv5 A:1480-1814 [217040]
        automated match to d1uyrb1
        complexed with rcp
      2. 2436613Domain d3tv5a2: 3tv5 A:1815-2195 [217041]
        automated match to d1od2a2
        complexed with rcp
      3. 2436614Domain d3tv5b1: 3tv5 B:1480-1814 [217042]
        automated match to d1uyrb1
        complexed with rcp
      4. 2436615Domain d3tv5b2: 3tv5 B:1815-2189 [217043]
        automated match to d1od2a2
        complexed with rcp
      5. 2436616Domain d3tv5c1: 3tv5 C:1492-1814 [217044]
        automated match to d1uyrb1
        complexed with rcp
      6. 2436617Domain d3tv5c2: 3tv5 C:1815-2192 [217045]
        automated match to d1od2a2
        complexed with rcp
    2. Domains for 3tvu:
      1. 2436602Domain d3tvua1: 3tvu A:1480-1814 [217047]
        automated match to d1uyrb1
        complexed with b37
      2. 2436603Domain d3tvua2: 3tvu A:1815-2195 [217048]
        automated match to d1od2a2
        complexed with b37
      3. 2436604Domain d3tvub1: 3tvu B:1480-1814 [217049]
        automated match to d1uyrb1
        complexed with b37
      4. 2436605Domain d3tvub2: 3tvu B:1815-2189 [217050]
        automated match to d1od2a2
        complexed with b37
      5. 2436606Domain d3tvuc1: 3tvu C:1495-1814 [217051]
        automated match to d1uyrb1
        complexed with b37
      6. 2436607Domain d3tvuc2: 3tvu C:1815-2192 [217052]
        automated match to d1od2a2
        complexed with b37
    3. Domains for 3tvw:
      1. 2436618Domain d3tvwa1: 3tvw A:1480-1814 [217053]
        automated match to d1uyrb1
        complexed with 07h
      2. 2436619Domain d3tvwa2: 3tvw A:1815-2195 [217054]
        automated match to d1od2a2
        complexed with 07h
      3. 2436620Domain d3tvwb1: 3tvw B:1480-1814 [217055]
        automated match to d1uyrb1
        complexed with 07h
      4. 2436621Domain d3tvwb2: 3tvw B:1815-2189 [217056]
        automated match to d1od2a2
        complexed with 07h
      5. 2436622Domain d3tvwc1: 3tvw C:1495-1814 [217057]
        automated match to d1uyrb1
        complexed with 07h
      6. 2436623Domain d3tvwc2: 3tvw C:1815-2192 [217058]
        automated match to d1od2a2
        complexed with 07h
    4. Domains for 3tz3:
      1. 2436624Domain d3tz3a1: 3tz3 A:1480-1814 [217106]
        automated match to d1uyrb1
        complexed with b36
      2. 2436625Domain d3tz3a2: 3tz3 A:1815-2193 [217107]
        automated match to d1od2a2
        complexed with b36
      3. 2436626Domain d3tz3b1: 3tz3 B:1480-1814 [217108]
        automated match to d1uyrb1
        complexed with b36
      4. 2436627Domain d3tz3b2: 3tz3 B:1815-2191 [217109]
        automated match to d1od2a2
        complexed with b36
      5. 2436628Domain d3tz3c1: 3tz3 C:1494-1814 [217110]
        automated match to d1uyrb1
        complexed with b36
      6. 2436629Domain d3tz3c2: 3tz3 C:1815-2191 [217111]
        automated match to d1od2a2
        complexed with b36
    5. Domains for 4wyo:
      1. 2436630Domain d4wyoc1: 4wyo C:1492-1814 [269131]
        automated match to d1uyta1
        complexed with 3w2
      2. 2436631Domain d4wyoc2: 4wyo C:1815-2233 [269132]
        automated match to d1uyra2
        complexed with 3w2
    6. Domains for 4wz8:
      1. 2436608Domain d4wz8b1: 4wz8 B:1480-1814 [261637]
        automated match to d1uyta1
        complexed with 3w7
      2. 2436609Domain d4wz8b2: 4wz8 B:1815-2189 [261638]
        automated match to d1uyra2
        complexed with 3w7
      3. 2436610Domain d4wz8c1: 4wz8 C:1494-1814 [261635]
        automated match to d1uyta1
        complexed with 3w7
      4. 2436611Domain d4wz8c2: 4wz8 C:1815-2191 [261636]
        automated match to d1uyra2
        complexed with 3w7
  3. 2436632Mycobacterium tuberculosis [TaxId:83332] [230567] (1 PDB entry)

More info for Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain

Timeline for Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain:

  • Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain first appeared in SCOPe 2.03
  • Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain appears in SCOPe 2.06