Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2099098Fold c.14: ClpP/crotonase [52095] (1 superfamily)
    core: 4 turns of (beta-beta-alpha)n superhelix
  4. 2099099Superfamily c.14.1: ClpP/crotonase [52096] (5 families) (S)
  5. 2099797Family c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain [89572] (7 protein domains)
    Pfam PF01039
    the active site is formed by two different homologous subunits or domains of this fold
  6. 2099959Protein automated matches [226926] (3 species)
    not a true protein

Species:

  1. 2099960Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225864] (7 PDB entries)
    1. Domains for 3h0j:
      1. 2099979Domain d3h0ja1: 3h0j A:1482-1814 [210758]
        automated match to d1uyrb1
        complexed with b36
      2. 2099980Domain d3h0ja2: 3h0j A:1815-2195 [210759]
        automated match to d1od2a2
        complexed with b36
      3. 2099981Domain d3h0jb1: 3h0j B:1482-1814 [210760]
        automated match to d1uyrb1
        complexed with b36
      4. 2099982Domain d3h0jb2: 3h0j B:1815-2189 [210761]
        automated match to d1od2a2
        complexed with b36
      5. 2099983Domain d3h0jc1: 3h0j C:1492-1814 [210762]
        automated match to d1uyrb1
        complexed with b36
      6. 2099984Domain d3h0jc2: 3h0j C:1815-2189 [210763]
        automated match to d1od2a2
        complexed with b36
    2. Domains for 3h0q:
      1. 2099967Domain d3h0qa1: 3h0q A:1482-1814 [210764]
        automated match to d1uyrb1
        complexed with b37
      2. 2099968Domain d3h0qa2: 3h0q A:1815-2195 [210765]
        automated match to d1od2a2
        complexed with b37
      3. 2099969Domain d3h0qb1: 3h0q B:1482-1814 [210766]
        automated match to d1uyrb1
        complexed with b37
      4. 2099970Domain d3h0qb2: 3h0q B:1815-2189 [210767]
        automated match to d1od2a2
        complexed with b37
      5. 2099971Domain d3h0qc1: 3h0q C:1492-1814 [210768]
        automated match to d1uyrb1
        complexed with b37
      6. 2099972Domain d3h0qc2: 3h0q C:1815-2189 [210769]
        automated match to d1od2a2
        complexed with b37
    3. Domains for 3h0s:
      1. 2099961Domain d3h0sa1: 3h0s A:1480-1814 [210770]
        automated match to d1uyrb1
        complexed with b38, so4
      2. 2099962Domain d3h0sa2: 3h0s A:1815-2195 [210771]
        automated match to d1od2a2
        complexed with b38, so4
      3. 2099963Domain d3h0sb1: 3h0s B:1480-1814 [210772]
        automated match to d1uyrb1
        complexed with b38, so4
      4. 2099964Domain d3h0sb2: 3h0s B:1815-2189 [210773]
        automated match to d1od2a2
        complexed with b38, so4
      5. 2099965Domain d3h0sc1: 3h0s C:1492-1814 [210774]
        automated match to d1uyrb1
        complexed with b38, so4
      6. 2099966Domain d3h0sc2: 3h0s C:1815-2192 [210775]
        automated match to d1od2a2
        complexed with b38, so4
    4. Domains for 3pgq:
      1. 2099973Domain d3pgqa1: 3pgq A:1480-1814 [214770]
        automated match to d1uyrb1
        complexed with gy3
      2. 2099974Domain d3pgqa2: 3pgq A:1815-2195 [214771]
        automated match to d1od2a2
        complexed with gy3
      3. 2099975Domain d3pgqb1: 3pgq B:1480-1814 [214772]
        automated match to d1uyrb1
        complexed with gy3
      4. 2099976Domain d3pgqb2: 3pgq B:1815-2192 [214773]
        automated match to d1od2a2
        complexed with gy3
      5. 2099977Domain d3pgqc1: 3pgq C:1491-1814 [214774]
        automated match to d1uyrb1
        complexed with gy3
      6. 2099978Domain d3pgqc2: 3pgq C:1815-2193 [214775]
        automated match to d1od2a2
        complexed with gy3
    5. Domains for 5ctb:
      1. 2099987Domain d5ctba1: 5ctb A:1480-1814 [278059]
        automated match to d1uyta1
        complexed with 57j, so4
      2. 2099988Domain d5ctba2: 5ctb A:1815-2195 [278060]
        automated match to d1uyra2
        complexed with 57j, so4
      3. 2099989Domain d5ctbb1: 5ctb B:1480-1814 [278061]
        automated match to d1uyta1
        complexed with 57j, so4
      4. 2099990Domain d5ctbb2: 5ctb B:1815-2189 [278062]
        automated match to d1uyra2
        complexed with 57j, so4
      5. 2099991Domain d5ctbc1: 5ctb C:1493-1814 [278067]
        automated match to d1uyta1
        complexed with 57j, so4
      6. 2099992Domain d5ctbc2: 5ctb C:1815-2192 [278068]
        automated match to d1uyra2
        complexed with 57j, so4
    6. Domains for 5ctc:
      1. 2099993Domain d5ctca1: 5ctc A:1480-1814 [278065]
        automated match to d1uyta1
        complexed with 57k, so4
      2. 2099994Domain d5ctca2: 5ctc A:1815-2193 [278066]
        automated match to d1uyra2
        complexed with 57k, so4
      3. 2099995Domain d5ctcb1: 5ctc B:1481-1814 [278063]
        automated match to d1uyta1
        complexed with 57k, so4
      4. 2099996Domain d5ctcb2: 5ctc B:1815-2189 [278064]
        automated match to d1uyra2
        complexed with 57k, so4
      5. 2099997Domain d5ctcc1: 5ctc C:1493-1814 [278069]
        automated match to d1uyta1
        complexed with 57k, so4
      6. 2099998Domain d5ctcc2: 5ctc C:1815-2192 [278070]
        automated match to d1uyra2
        complexed with 57k, so4
    7. Domains for 5cte:
      1. 2099985Domain d5ctec1: 5cte C:1492-1814 [278057]
        automated match to d1uyta1
        complexed with 57l, so4
      2. 2099986Domain d5ctec2: 5cte C:1815-2233 [278058]
        automated match to d1uyra2
        complexed with 57l, so4
  2. 2099999Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [226234] (6 PDB entries)
    1. Domains for 3tv5:
      1. 2100012Domain d3tv5a1: 3tv5 A:1480-1814 [217040]
        automated match to d1uyrb1
        complexed with rcp
      2. 2100013Domain d3tv5a2: 3tv5 A:1815-2195 [217041]
        automated match to d1od2a2
        complexed with rcp
      3. 2100014Domain d3tv5b1: 3tv5 B:1480-1814 [217042]
        automated match to d1uyrb1
        complexed with rcp
      4. 2100015Domain d3tv5b2: 3tv5 B:1815-2189 [217043]
        automated match to d1od2a2
        complexed with rcp
      5. 2100016Domain d3tv5c1: 3tv5 C:1492-1814 [217044]
        automated match to d1uyrb1
        complexed with rcp
      6. 2100017Domain d3tv5c2: 3tv5 C:1815-2192 [217045]
        automated match to d1od2a2
        complexed with rcp
    2. Domains for 3tvu:
      1. 2100004Domain d3tvua1: 3tvu A:1480-1814 [217047]
        automated match to d1uyrb1
        complexed with b37
      2. 2100005Domain d3tvua2: 3tvu A:1815-2195 [217048]
        automated match to d1od2a2
        complexed with b37
      3. 2100006Domain d3tvub1: 3tvu B:1480-1814 [217049]
        automated match to d1uyrb1
        complexed with b37
      4. 2100007Domain d3tvub2: 3tvu B:1815-2189 [217050]
        automated match to d1od2a2
        complexed with b37
      5. 2100008Domain d3tvuc1: 3tvu C:1495-1814 [217051]
        automated match to d1uyrb1
        complexed with b37
      6. 2100009Domain d3tvuc2: 3tvu C:1815-2192 [217052]
        automated match to d1od2a2
        complexed with b37
    3. Domains for 3tvw:
      1. 2100018Domain d3tvwa1: 3tvw A:1480-1814 [217053]
        automated match to d1uyrb1
        complexed with 07h
      2. 2100019Domain d3tvwa2: 3tvw A:1815-2195 [217054]
        automated match to d1od2a2
        complexed with 07h
      3. 2100020Domain d3tvwb1: 3tvw B:1480-1814 [217055]
        automated match to d1uyrb1
        complexed with 07h
      4. 2100021Domain d3tvwb2: 3tvw B:1815-2189 [217056]
        automated match to d1od2a2
        complexed with 07h
      5. 2100022Domain d3tvwc1: 3tvw C:1495-1814 [217057]
        automated match to d1uyrb1
        complexed with 07h
      6. 2100023Domain d3tvwc2: 3tvw C:1815-2192 [217058]
        automated match to d1od2a2
        complexed with 07h
    4. Domains for 3tz3:
      1. 2100024Domain d3tz3a1: 3tz3 A:1480-1814 [217106]
        automated match to d1uyrb1
        complexed with b36
      2. 2100025Domain d3tz3a2: 3tz3 A:1815-2193 [217107]
        automated match to d1od2a2
        complexed with b36
      3. 2100026Domain d3tz3b1: 3tz3 B:1480-1814 [217108]
        automated match to d1uyrb1
        complexed with b36
      4. 2100027Domain d3tz3b2: 3tz3 B:1815-2191 [217109]
        automated match to d1od2a2
        complexed with b36
      5. 2100028Domain d3tz3c1: 3tz3 C:1494-1814 [217110]
        automated match to d1uyrb1
        complexed with b36
      6. 2100029Domain d3tz3c2: 3tz3 C:1815-2191 [217111]
        automated match to d1od2a2
        complexed with b36
    5. Domains for 4wyo:
      1. 2100010Domain d4wyoc1: 4wyo C:1492-1814 [269131]
        automated match to d1uyta1
        complexed with 3w2
      2. 2100011Domain d4wyoc2: 4wyo C:1815-2233 [269132]
        automated match to d1uyra2
        complexed with 3w2
    6. Domains for 4wz8:
      1. 2100000Domain d4wz8b1: 4wz8 B:1480-1814 [261637]
        automated match to d1uyta1
        complexed with 3w7
      2. 2100001Domain d4wz8b2: 4wz8 B:1815-2189 [261638]
        automated match to d1uyra2
        complexed with 3w7
      3. 2100002Domain d4wz8c1: 4wz8 C:1494-1814 [261635]
        automated match to d1uyta1
        complexed with 3w7
      4. 2100003Domain d4wz8c2: 4wz8 C:1815-2191 [261636]
        automated match to d1uyra2
        complexed with 3w7
  3. 2100030Mycobacterium tuberculosis [TaxId:83332] [230567] (1 PDB entry)

More info for Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain

Timeline for Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain:

  • Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain first appeared in SCOPe 2.03
  • Protein automated matches from c.14.1.4: Biotin dependent carboxylase carboxyltransferase domain appears in SCOPe 2.05