Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2406647Fold b.85: beta-clip [51268] (7 superfamilies)
    double-stranded ribbon sharply bent in two places; the ribbon ends form incomplete barrel; jelly-roll
  4. 2407306Superfamily b.85.7: SET domain [82199] (4 families) (S)
    duplication: the core is composed of two structural repeats similar to (circularly permuted) repeats of AFPIII
    also contains a substrate-binding alpha+beta subdomain inserted in the core
  5. 2407384Family b.85.7.0: automated matches [227191] (1 protein)
    not a true family
  6. 2407385Protein automated matches [226914] (2 species)
    not a true protein

Species:

  1. 2407386Human (Homo sapiens) [TaxId:9606] [225158] (23 PDB entries)
    1. Domains for 2igq:
      1. 2407396Domain d2igqa_: 2igq A: [204775]
        automated match to d1pega_
        complexed with sah, zn
      2. 2407397Domain d2igqb_: 2igq B: [204776]
        automated match to d1pega_
        complexed with sah, zn
    2. Domains for 2o8j:
      1. 2407392Domain d2o8ja_: 2o8j A: [230988]
        automated match to d3mo5c_
        complexed with sah, zn
      2. 2407393Domain d2o8jb_: 2o8j B: [230989]
        automated match to d3mo5c_
        complexed with sah, zn
      3. 2407394Domain d2o8jc_: 2o8j C: [230990]
        automated match to d3mo5c_
        complexed with sah, zn
      4. 2407395Domain d2o8jd_: 2o8j D: [230991]
        automated match to d3mo5c_
        complexed with sah, zn
    3. Domain for 3bo5:
    4. Domains for 3fpd:
      1. 2407422Domain d3fpda_: 3fpd A: [210038]
        automated match to d1pega_
        complexed with q4a, sah, zn
      2. 2407423Domain d3fpdb_: 3fpd B: [210039]
        automated match to d1pega_
        complexed with q4a, sah, zn
    5. Domains for 3hna:
      1. 2407388Domain d3hnaa1: 3hna A:951-1235 [232497]
        Other proteins in same PDB: d3hnaa2
        automated match to d3mo5c_
        complexed with sah, zn
      2. 2407389Domain d3hnab_: 3hna B: [211152]
        Other proteins in same PDB: d3hnaa2
        automated match to d1pega_
        complexed with sah, zn
    6. Domains for 3k5k:
      1. 2407406Domain d3k5ka_: 3k5k A: [232670]
        automated match to d3mo5c_
        complexed with cl, dxq, sah, unx, zn
      2. 2407407Domain d3k5kb_: 3k5k B: [232671]
        automated match to d3mo5c_
        complexed with cl, dxq, sah, unx, zn
    7. Domains for 3mo0:
      1. 2407430Domain d3mo0a_: 3mo0 A: [232933]
        automated match to d2igqa_
        complexed with e11, edo, sah, zn
      2. 2407431Domain d3mo0b_: 3mo0 B: [232934]
        automated match to d2igqa_
        complexed with e11, edo, sah, zn
    8. Domains for 3mo2:
      1. 2407418Domain d3mo2a_: 3mo2 A: [232935]
        automated match to d2igqa_
        complexed with e67, sah, zn
      2. 2407419Domain d3mo2b_: 3mo2 B: [213495]
        automated match to d1pega_
        complexed with e67, sah, zn
      3. 2407420Domain d3mo2c_: 3mo2 C: [213496]
        automated match to d1pega_
        complexed with e67, sah, zn
      4. 2407421Domain d3mo2d_: 3mo2 D: [213497]
        automated match to d1pega_
        complexed with e67, sah, zn
    9. Domains for 3mo5:
      1. 2407402Domain d3mo5a_: 3mo5 A: [232936]
        automated match to d2igqa_
        complexed with e72, sah, zn
      2. 2407403Domain d3mo5b_: 3mo5 B: [213498]
        automated match to d1pega_
        complexed with e72, sah, zn
      3. 2407404Domain d3mo5c_: 3mo5 C: [213499]
        automated match to d1pega_
        complexed with e72, sah, zn
      4. 2407405Domain d3mo5d_: 3mo5 D: [213500]
        automated match to d1pega_
        complexed with e72, sah, zn
    10. Domains for 3nni:
      1. 2407428Domain d3nnia_: 3nni A: [306052]
        automated match to d3k5ka_
        complexed with ciq, sah, unx, zn
      2. 2407429Domain d3nnib_: 3nni B: [306053]
        automated match to d3k5ka_
        complexed with ciq, sah, unx, zn
    11. Domains for 3rjw:
      1. 2407432Domain d3rjwa_: 3rjw A: [249130]
        automated match to d3k5ka_
        complexed with ciq, sah, unx, zn
      2. 2407433Domain d3rjwb_: 3rjw B: [249131]
        automated match to d3k5ka_
        complexed with ciq, sah, unx, zn
    12. Domains for 4nvq:
      1. 2407426Domain d4nvqa_: 4nvq A: [236076]
        automated match to d3mo5c_
        complexed with 2od, sah, zn
      2. 2407427Domain d4nvqb_: 4nvq B: [236077]
        automated match to d3mo5c_
        complexed with 2od, sah, zn
    13. Domains for 5jj0:
      1. 2407414Domain d5jj0a_: 5jj0 A: [319338]
        automated match to d3k5ka_
        complexed with sam, zn
      2. 2407415Domain d5jj0b_: 5jj0 B: [319341]
        automated match to d3k5ka_
        complexed with sam, zn
    14. Domains for 5ttf:
      1. 2407410Domain d5ttfa_: 5ttf A: [327503]
        automated match to d3k5ka_
        complexed with 7kz, cl, sam, unx, zn
      2. 2407411Domain d5ttfb_: 5ttf B: [327535]
        automated match to d3k5ka_
        complexed with 7kz, cl, sam, unx, zn
      3. 2407412Domain d5ttfc_: 5ttf C: [327496]
        automated match to d3k5ka_
        complexed with 7kz, cl, sam, unx, zn
      4. 2407413Domain d5ttfd_: 5ttf D: [327501]
        automated match to d3k5ka_
        complexed with 7kz, cl, sam, unx, zn
    15. Domains for 5ttg:
      1. 2407400Domain d5ttga_: 5ttg A: [329357]
        automated match to d3mo5c_
        complexed with 7kz, cl, dms, gol, sam, unx, zn
      2. 2407401Domain d5ttgb_: 5ttg B: [329322]
        automated match to d3mo5c_
        complexed with 7kz, cl, dms, gol, sam, unx, zn
    16. Domains for 5tuy:
      1. 2407434Domain d5tuya_: 5tuy A: [330273]
        automated match to d4nvqb_
        complexed with 7l6, sam, zn
      2. 2407435Domain d5tuyb_: 5tuy B: [330127]
        automated match to d4nvqb_
        complexed with 7l6, sam, zn
    17. Domains for 5tuz:
      1. 2407424Domain d5tuza_: 5tuz A: [330147]
        automated match to d3mo5c_
        complexed with 7l6, edo, sam, zn
      2. 2407425Domain d5tuzb_: 5tuz B: [330129]
        automated match to d3mo5c_
        complexed with 7l6, edo, sam, zn
    18. Domains for 5v9i:
      1. 3047804Domain d5v9ia_: 5v9i A: [347866]
        automated match to d5vscb_
        complexed with 90p, gol, sam, unx, zn
      2. 3047817Domain d5v9ic_: 5v9i C: [347879]
        automated match to d5vscb_
        complexed with 90p, gol, sam, unx, zn
      3. 3047859Domain d5v9id_: 5v9i D: [347921]
        automated match to d5vscb_
        complexed with 90p, gol, sam, unx, zn
      4. 3047962Domain d5v9ib_: 5v9i B: [348024]
        automated match to d5vscb_
        complexed with 90p, gol, sam, unx, zn
    19. Domains for 5v9j:
      1. 3047760Domain d5v9jb_: 5v9j B: [347822]
        automated match to d5ttga_
        complexed with 90p, cl, dms, sam, unx, zn
      2. 3047839Domain d5v9ja_: 5v9j A: [347901]
        automated match to d5ttga_
        complexed with 90p, cl, dms, sam, unx, zn
    20. Domains for 5vsc:
      1. 2407390Domain d5vsca_: 5vsc A: [336683]
        automated match to d3k5ka_
        complexed with 9hj, sam, zn
      2. 2407391Domain d5vscb_: 5vsc B: [336687]
        automated match to d3k5ka_
        complexed with 9hj, sam, zn
    21. Domains for 5vsd:
      1. 2407416Domain d5vsda_: 5vsd A: [336721]
        automated match to d3mo5c_
        complexed with 9hj, dio, gol, sam, zn
      2. 2407417Domain d5vsdb_: 5vsd B: [336686]
        automated match to d3mo5c_
        complexed with 9hj, dio, gol, sam, zn
    22. Domains for 5vse:
      1. 2407398Domain d5vsea_: 5vse A: [336870]
        Other proteins in same PDB: d5vseb2
        automated match to d3k5ka_
        complexed with 9hg, sam, zn
      2. 2407399Domain d5vseb1: 5vse B:917-1190 [336927]
        Other proteins in same PDB: d5vseb2
        automated match to d3k5ka_
        complexed with 9hg, sam, zn
    23. Domains for 5vsf:
      1. 2407408Domain d5vsfa_: 5vsf A: [336682]
        automated match to d3mo5c_
        complexed with 9hg, dio, gol, sam, zn
      2. 2407409Domain d5vsfb_: 5vsf B: [336752]
        automated match to d3mo5c_
        complexed with 9hg, dio, gol, sam, zn
  2. 2407436Schizosaccharomyces pombe [TaxId:284812] [341801] (2 PDB entries)
    1. Domains for 5h6z:
      1. 2407437Domain d5h6za_: 5h6z A: [341804]
        Other proteins in same PDB: d5h6zb2
        automated match to d3kmta_
        complexed with nh4, peg, so4
      2. 2407438Domain d5h6zb1: 5h6z B:1-114 [341802]
        Other proteins in same PDB: d5h6zb2
        automated match to d3kmta_
        complexed with nh4, peg, so4
    2. Domains for 5ww0:
      1. 2407439Domain d5ww0a_: 5ww0 A: [342543]
        Other proteins in same PDB: d5ww0b2
        automated match to d3kmta_
        complexed with so4
      2. 2407440Domain d5ww0b1: 5ww0 B:1-114 [342549]
        Other proteins in same PDB: d5ww0b2
        automated match to d3kmta_
        complexed with so4

More info for Protein automated matches from b.85.7.0: automated matches

Timeline for Protein automated matches from b.85.7.0: automated matches: