Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2053108Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 2053527Superfamily b.42.2: Ricin B-like lectins [50370] (4 families) (S)
  5. 2053753Family b.42.2.0: automated matches [227190] (1 protein)
    not a true family
  6. 2053754Protein automated matches [226913] (9 species)
    not a true protein

Species:

  1. 2053755Castor bean (Ricinus communis) [TaxId:3988] [256065] (1 PDB entry)
  2. 2053758Clostridium botulinum [TaxId:1491] [254975] (8 PDB entries)
    1. Domains for 1ybi:
      1. 2053759Domain d1ybia1: 1ybi A:10-151 [241001]
        automated match to d2e4ma1
      2. 2053760Domain d1ybia2: 1ybi A:152-293 [241002]
        automated match to d2e4ma2
      3. 2053761Domain d1ybib1: 1ybi B:10-151 [241003]
        automated match to d2e4ma1
      4. 2053762Domain d1ybib2: 1ybi B:152-293 [241004]
        automated match to d2e4ma2
    2. Domains for 4lo0:
      1. 2053763Domain d4lo0a1: 4lo0 A:9-151 [253656]
        Other proteins in same PDB: d4lo0a3, d4lo0b3
        automated match to d2e4ma1
      2. 2053764Domain d4lo0a2: 4lo0 A:152-293 [253657]
        Other proteins in same PDB: d4lo0a3, d4lo0b3
        automated match to d2e4ma2
      3. 2053765Domain d4lo0b1: 4lo0 B:10-151 [253658]
        Other proteins in same PDB: d4lo0a3, d4lo0b3
        automated match to d2e4ma1
      4. 2053766Domain d4lo0b2: 4lo0 B:152-293 [253659]
        Other proteins in same PDB: d4lo0a3, d4lo0b3
        automated match to d2e4ma2
    3. Domains for 4lo1:
      1. 2053775Domain d4lo1a1: 4lo1 A:9-151 [253660]
        Other proteins in same PDB: d4lo1a3, d4lo1b3
        automated match to d2e4ma1
        complexed with gal
      2. 2053776Domain d4lo1a2: 4lo1 A:152-293 [253661]
        Other proteins in same PDB: d4lo1a3, d4lo1b3
        automated match to d2e4ma2
        complexed with gal
      3. 2053777Domain d4lo1b1: 4lo1 B:10-151 [253662]
        Other proteins in same PDB: d4lo1a3, d4lo1b3
        automated match to d2e4ma1
        complexed with gal
      4. 2053778Domain d4lo1b2: 4lo1 B:152-293 [253663]
        Other proteins in same PDB: d4lo1a3, d4lo1b3
        automated match to d2e4ma2
        complexed with gal
    4. Domains for 4lo2:
      1. 2053767Domain d4lo2a1: 4lo2 A:9-151 [253664]
        Other proteins in same PDB: d4lo2a3, d4lo2b3
        automated match to d2e4ma1
      2. 2053768Domain d4lo2a2: 4lo2 A:152-293 [253665]
        Other proteins in same PDB: d4lo2a3, d4lo2b3
        automated match to d2e4ma2
      3. 2053769Domain d4lo2b1: 4lo2 B:9-151 [253666]
        Other proteins in same PDB: d4lo2a3, d4lo2b3
        automated match to d2e4ma1
      4. 2053770Domain d4lo2b2: 4lo2 B:152-293 [253667]
        Other proteins in same PDB: d4lo2a3, d4lo2b3
        automated match to d2e4ma2
    5. Domains for 4lo3:
      1. 2053771Domain d4lo3a1: 4lo3 A:9-151 [253668]
        Other proteins in same PDB: d4lo3a3, d4lo3b3
        automated match to d2e4ma1
      2. 2053772Domain d4lo3a2: 4lo3 A:152-293 [253669]
        Other proteins in same PDB: d4lo3a3, d4lo3b3
        automated match to d2e4ma2
      3. 2053773Domain d4lo3b1: 4lo3 B:10-151 [253670]
        Other proteins in same PDB: d4lo3a3, d4lo3b3
        automated match to d2e4ma1
      4. 2053774Domain d4lo3b2: 4lo3 B:152-293 [253671]
        Other proteins in same PDB: d4lo3a3, d4lo3b3
        automated match to d2e4ma2
    6. Domains for 4qd2:
      1. 2053783Domain d4qd2d2: 4qd2 D:152-293 [257656]
        Other proteins in same PDB: d4qd2c2, d4qd2d3, d4qd2e1, d4qd2e2, d4qd2h3, d4qd2i3, d4qd2j1, d4qd2j2
        automated match to d4lo0a2
        complexed with ca
      2. 2053784Domain d4qd2h1: 4qd2 H:9-151 [258345]
        Other proteins in same PDB: d4qd2c2, d4qd2d3, d4qd2e1, d4qd2e2, d4qd2h3, d4qd2i3, d4qd2j1, d4qd2j2
        automated match to d4lo0a1
        complexed with ca
      3. 2053785Domain d4qd2h2: 4qd2 H:152-293 [258346]
        Other proteins in same PDB: d4qd2c2, d4qd2d3, d4qd2e1, d4qd2e2, d4qd2h3, d4qd2i3, d4qd2j1, d4qd2j2
        automated match to d4lo0a2
        complexed with ca
      4. 2053786Domain d4qd2i1: 4qd2 I:9-151 [263674]
        Other proteins in same PDB: d4qd2c2, d4qd2d3, d4qd2e1, d4qd2e2, d4qd2h3, d4qd2i3, d4qd2j1, d4qd2j2
        automated match to d4lo0a1
        complexed with ca
      5. 2053787Domain d4qd2i2: 4qd2 I:152-293 [263675]
        Other proteins in same PDB: d4qd2c2, d4qd2d3, d4qd2e1, d4qd2e2, d4qd2h3, d4qd2i3, d4qd2j1, d4qd2j2
        automated match to d4lo0a2
        complexed with ca
    7. Domains for 5bp5:
      1. 2053779Domain d5bp5a1: 5bp5 A:9-151 [276498]
        Other proteins in same PDB: d5bp5a3, d5bp5b3
        automated match to d4lo0a1
        complexed with ipt
      2. 2053780Domain d5bp5a2: 5bp5 A:152-293 [276500]
        Other proteins in same PDB: d5bp5a3, d5bp5b3
        automated match to d4lo0a2
        complexed with ipt
      3. 2053781Domain d5bp5b1: 5bp5 B:10-151 [276497]
        Other proteins in same PDB: d5bp5a3, d5bp5b3
        automated match to d4lo0a1
        complexed with ipt
      4. 2053782Domain d5bp5b2: 5bp5 B:152-293 [276499]
        Other proteins in same PDB: d5bp5a3, d5bp5b3
        automated match to d4lo0a2
        complexed with ipt
    8. Domains for 5bqu:
      1. 2053788Domain d5bqua1: 5bqu A:10-151 [278009]
        Other proteins in same PDB: d5bqua3, d5bqub3
        automated match to d4lo0a1
        complexed with fru, gal
      2. 2053789Domain d5bqua2: 5bqu A:152-293 [278010]
        Other proteins in same PDB: d5bqua3, d5bqub3
        automated match to d4lo0a2
        complexed with fru, gal
      3. 2053790Domain d5bqub1: 5bqu B:10-151 [278012]
        Other proteins in same PDB: d5bqua3, d5bqub3
        automated match to d4lo0a1
        complexed with fru, gal
      4. 2053791Domain d5bqub2: 5bqu B:152-293 [278014]
        Other proteins in same PDB: d5bqua3, d5bqub3
        automated match to d4lo0a2
        complexed with fru, gal
  3. 2053792Clostridium botulinum [TaxId:441771] [257654] (1 PDB entry)
  4. 2053795Clostridium botulinum [TaxId:498213] [257331] (1 PDB entry)
  5. 2053800Polyporus squamosus [TaxId:5640] [233243] (2 PDB entries)
    1. Domains for 3phz:
      1. 2053801Domain d3phza1: 3phz A:2-148 [233244]
        Other proteins in same PDB: d3phza2, d3phzb2
        automated match to d2ihoa1
        complexed with sia
      2. 2053802Domain d3phzb1: 3phz B:2-148 [233245]
        Other proteins in same PDB: d3phza2, d3phzb2
        automated match to d2ihoa1
        complexed with sia
    2. Domains for 5mua:
      1. 2293331Domain d5muab1: 5mua B:2-148 [336632]
        Other proteins in same PDB: d5muaa2, d5muab2
        automated match to d3phza1
        complexed with ca, dms, e64, gal
      2. 2293375Domain d5muaa1: 5mua A:2-148 [336676]
        Other proteins in same PDB: d5muaa2, d5muab2
        automated match to d3phza1
        complexed with ca, dms, e64, gal
  6. 2053803Sambucus nigra [TaxId:4202] [225559] (8 PDB entries)
    1. Domains for 3c9z:
      1. 2053804Domain d3c9za1: 3c9z A:1-128 [208821]
        automated match to d1onkb1
        complexed with act, nag, so4
      2. 2053805Domain d3c9za2: 3c9z A:129-257 [208822]
        automated match to d1onkb2
        complexed with act, nag, so4
    2. Domains for 3ca0:
      1. 2053818Domain d3ca0a1: 3ca0 A:1-128 [208823]
        automated match to d1onkb1
        complexed with act, so4
      2. 2053819Domain d3ca0a2: 3ca0 A:129-257 [208824]
        automated match to d1onkb2
        complexed with act, so4
    3. Domains for 3ca1:
      1. 2053808Domain d3ca1a1: 3ca1 A:1-128 [208825]
        automated match to d1onkb1
        complexed with act, gla, nag, so4
      2. 2053809Domain d3ca1a2: 3ca1 A:129-257 [208826]
        automated match to d1onkb2
        complexed with act, gla, nag, so4
    4. Domains for 3ca3:
      1. 2053812Domain d3ca3a1: 3ca3 A:1-128 [208827]
        automated match to d1onkb1
        complexed with a2g, act, nag, nga, so4
      2. 2053813Domain d3ca3a2: 3ca3 A:129-257 [208828]
        automated match to d1onkb2
        complexed with a2g, act, nag, nga, so4
    5. Domains for 3ca4:
      1. 2053816Domain d3ca4a1: 3ca4 A:1-128 [208829]
        automated match to d1onkb1
        complexed with act, lat, nag, so4
      2. 2053817Domain d3ca4a2: 3ca4 A:129-257 [208830]
        automated match to d1onkb2
        complexed with act, lat, nag, so4
    6. Domains for 3ca5:
      1. 2053814Domain d3ca5a1: 3ca5 A:1-128 [208831]
        automated match to d1onkb1
        complexed with act, amg, nag, so4
      2. 2053815Domain d3ca5a2: 3ca5 A:129-257 [208832]
        automated match to d1onkb2
        complexed with act, amg, nag, so4
    7. Domains for 3ca6:
      1. 2053806Domain d3ca6a1: 3ca6 A:1-128 [208833]
        automated match to d1onkb1
        complexed with a2g, act, nag, ser, so4
      2. 2053807Domain d3ca6a2: 3ca6 A:129-257 [208834]
        automated match to d1onkb2
        complexed with a2g, act, nag, ser, so4
    8. Domains for 3cah:
      1. 2053810Domain d3caha1: 3cah A:1-128 [208842]
        automated match to d1onkb1
        complexed with act, fca, nag, so4
      2. 2053811Domain d3caha2: 3cah A:129-257 [208843]
        automated match to d1onkb2
        complexed with act, fca, nag, so4
  7. 2053820Streptomyces olivaceoviridis [TaxId:1921] [225151] (7 PDB entries)
    1. Domains for 2d1z:
      1. 2053821Domain d2d1za2: 2d1z A:322-436 [203862]
        Other proteins in same PDB: d2d1za1, d2d1zb1
        automated match to d1xyfa1
        complexed with gol, so4; mutant
      2. 2053822Domain d2d1zb2: 2d1z B:822-936 [203864]
        Other proteins in same PDB: d2d1za1, d2d1zb1
        automated match to d1xyfa1
        complexed with gol, so4; mutant
    2. Domains for 2d20:
      1. 2053827Domain d2d20a2: 2d20 A:322-436 [203866]
        Other proteins in same PDB: d2d20a1, d2d20b1
        automated match to d1xyfa1
        complexed with gol, npo; mutant
      2. 2053828Domain d2d20b2: 2d20 B:822-936 [203868]
        Other proteins in same PDB: d2d20a1, d2d20b1
        automated match to d1xyfa1
        complexed with gol, npo; mutant
    3. Domains for 2d22:
      1. 2053823Domain d2d22a2: 2d22 A:322-436 [203870]
        Other proteins in same PDB: d2d22a1, d2d22b1
        automated match to d1xyfa1
        complexed with gol, so4; mutant
      2. 2053824Domain d2d22b2: 2d22 B:822-936 [203872]
        Other proteins in same PDB: d2d22a1, d2d22b1
        automated match to d1xyfa1
        complexed with gol, so4; mutant
    4. Domains for 2d23:
      1. 2053829Domain d2d23a2: 2d23 A:322-436 [203874]
        Other proteins in same PDB: d2d23a1, d2d23b1
        automated match to d1xyfa1
        complexed with gol; mutant
      2. 2053830Domain d2d23b2: 2d23 B:822-936 [203876]
        Other proteins in same PDB: d2d23a1, d2d23b1
        automated match to d1xyfa1
        complexed with gol; mutant
    5. Domains for 2d24:
      1. 2053825Domain d2d24a2: 2d24 A:322-436 [203878]
        Other proteins in same PDB: d2d24a1, d2d24b1
        automated match to d1xyfa1
        complexed with gol, so4; mutant
      2. 2053826Domain d2d24b2: 2d24 B:822-936 [203880]
        Other proteins in same PDB: d2d24a1, d2d24b1
        automated match to d1xyfa1
        complexed with gol, so4; mutant
    6. Domains for 5gqd:
      1. 2294192Domain d5gqdb2: 5gqd B:804-927 [337493]
        Other proteins in same PDB: d5gqda1, d5gqdb1
        automated match to d2d1za2
        complexed with gol, xyp, xys; mutant
      2. 2294260Domain d5gqda2: 5gqd A:304-427 [337561]
        Other proteins in same PDB: d5gqda1, d5gqdb1
        automated match to d2d1za2
        complexed with gol, xyp, xys; mutant
    7. Domains for 5gqe:
      1. 2294178Domain d5gqeb2: 5gqe B:811-936 [337479]
        Other proteins in same PDB: d5gqea1, d5gqeb1
        automated match to d2d1za2
        complexed with xyp; mutant
      2. 2294183Domain d5gqea2: 5gqe A:311-436 [337483]
        Other proteins in same PDB: d5gqea1, d5gqeb1
        automated match to d2d1za2
        complexed with xyp; mutant
  8. 2053831Trichosanthes anguina [TaxId:50544] [226741] (1 PDB entry)
  9. 2268997Momordica charantia [TaxId:3673] [312303] (9 PDB entries)
    1. Domains for 4z8s:
      1. 2269419Domain d4z8sb1: 4z8s B:1-132 [312725]
        Other proteins in same PDB: d4z8sa_
        automated match to d4hr6c1
        complexed with bma, fuc, gol, nag, xyp
      2. 2269420Domain d4z8sb2: 4z8s B:133-261 [312726]
        Other proteins in same PDB: d4z8sa_
        automated match to d4hr6c2
        complexed with bma, fuc, gol, nag, xyp
    2. Domains for 4z9w:
      1. 2269047Domain d4z9wb1: 4z9w B:1-132 [312353]
        Other proteins in same PDB: d4z9wa_
        automated match to d4hr6c1
        complexed with bma, edo, fuc, nag
      2. 2269048Domain d4z9wb2: 4z9w B:133-261 [312354]
        Other proteins in same PDB: d4z9wa_
        automated match to d4hr6c2
        complexed with bma, edo, fuc, nag
    3. Domains for 4za3:
      1. 2269093Domain d4za3b1: 4za3 B:2-132 [312399]
        Other proteins in same PDB: d4za3a_
        automated match to d4hr6c1
        complexed with bma, edo, fuc, gol, nag
      2. 2269094Domain d4za3b2: 4za3 B:133-261 [312400]
        Other proteins in same PDB: d4za3a_
        automated match to d4hr6c2
        complexed with bma, edo, fuc, gol, nag
    4. Domains for 4zbv:
      1. 2269018Domain d4zbvb1: 4zbv B:1-132 [312324]
        Other proteins in same PDB: d4zbva_
        automated match to d4hr6c1
        complexed with a2g, bma, edo, fuc, gal, mbn, nag, pge, po4
      2. 2269019Domain d4zbvb2: 4zbv B:133-261 [312325]
        Other proteins in same PDB: d4zbva_
        automated match to d4hr6c2
        complexed with a2g, bma, edo, fuc, gal, mbn, nag, pge, po4
    5. Domains for 4zfu:
      1. 2269148Domain d4zfub1: 4zfu B:1-132 [312454]
        Other proteins in same PDB: d4zfua_
        automated match to d4hr6c1
        complexed with a2g, bma, fuc, gol, nag, pge, xyp
      2. 2269149Domain d4zfub2: 4zfu B:133-261 [312455]
        Other proteins in same PDB: d4zfua_
        automated match to d4hr6c2
        complexed with a2g, bma, fuc, gol, nag, pge, xyp
    6. Domains for 4zfw:
      1. 2268998Domain d4zfwb1: 4zfw B:1-132 [312304]
        Other proteins in same PDB: d4zfwa_
        automated match to d4hr6c1
        complexed with bma, fuc, gal, gla, gol, nag, xyp
      2. 2268999Domain d4zfwb2: 4zfw B:133-261 [312305]
        Other proteins in same PDB: d4zfwa_
        automated match to d4hr6c2
        complexed with bma, fuc, gal, gla, gol, nag, xyp
    7. Domains for 4zfy:
      1. 2269043Domain d4zfyb1: 4zfy B:1-132 [312349]
        Other proteins in same PDB: d4zfya_
        automated match to d4hr6c1
        complexed with amg, bma, nag
      2. 2269044Domain d4zfyb2: 4zfy B:133-261 [312350]
        Other proteins in same PDB: d4zfya_
        automated match to d4hr6c2
        complexed with amg, bma, nag
    8. Domains for 4zgr:
      1. 2269144Domain d4zgrb1: 4zgr B:1-132 [312450]
        Other proteins in same PDB: d4zgra_
        automated match to d4hr6c1
        complexed with bma, fuc, gal, gol, man, nag, nga, xyp
      2. 2269145Domain d4zgrb2: 4zgr B:133-261 [312451]
        Other proteins in same PDB: d4zgra_
        automated match to d4hr6c2
        complexed with bma, fuc, gal, gol, man, nag, nga, xyp
    9. Domains for 4zlb:
      1. 2269082Domain d4zlbb1: 4zlb B:1-132 [312388]
        Other proteins in same PDB: d4zlba_
        automated match to d4hr6c1
        complexed with bma, fuc, lat, nag, xyp
      2. 2269083Domain d4zlbb2: 4zlb B:133-261 [312389]
        Other proteins in same PDB: d4zlba_
        automated match to d4hr6c2
        complexed with bma, fuc, lat, nag, xyp

More info for Protein automated matches from b.42.2.0: automated matches

Timeline for Protein automated matches from b.42.2.0: automated matches: