Species:

1. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [233237] (1 PDB entry)

   • Domain for 3pge:

     • Domain d3pgeb2: 3pge B:127-163 [233238] Other proteins in same PDB: d3pgeb1 automated match to d1plqa2

2. Entamoeba (Entamoeba histolytica) [TaxId:5759] [233155] (1 PDB entry)

   • Domains for 3p91:

     1. Domain d3p91a1: 3p91 A:1-127 [233156] automated match to d1plqa1

     2. Domain d3p91a2: 3p91 A:128-254 [233184] automated match to d1plqa2

3. Escherichia coli K-12 [TaxId:83333] [256026] (1 PDB entry)

   • Domains for 3pwe:

     1. Domain d3pwea1: 3pwe A:1-122 [248695] automated match to d4k3la1 mutant

     2. Domain d3pwea2: 3pwe A:123-244 [248696] automated match to d4k3la2 mutant

     3. Domain d3pwea3: 3pwe A:245-366 [248697] automated match to d4k3lb3 mutant

     4. Domain d3pweb1: 3pwe B:1-122 [248698] automated match to d4k3la1 mutant

     5. Domain d3pweb2: 3pwe B:123-244 [248699] automated match to d4k3la2 mutant

     6. Domain d3pweb3: 3pwe B:245-366 [248700] automated match to d4k3lb3 mutant

4. Escherichia coli [TaxId:562] [255692] (2 PDB entries)

   1. Domains for 2xur:

      1. Domain d2xura1: 2xur A:1-122 [244585] automated match to d4k3la1 mutant

      2. Domain d2xura2: 2xur A:123-244 [244586] automated match to d4k3la2 mutant

      3. Domain d2xura3: 2xur A:245-366 [244587] automated match to d4k3lb3 mutant

      4. Domain d2xurb1: 2xur B:1-122 [244588] automated match to d4k3la1 mutant

      5. Domain d2xurb2: 2xur B:123-244 [244589] automated match to d4k3la2 mutant

      6. Domain d2xurb3: 2xur B:245-364 [244590] automated match to d4k3lb3 mutant

   2. Domains for 3f1v:

      1. Domain d3f1va1: 3f1v A:1-122 [246018] automated match to d4k3la1 complexed with ca, cl; mutant

      2. Domain d3f1va2: 3f1v A:123-244 [246019] automated match to d4k3la2 complexed with ca, cl; mutant

      3. Domain d3f1va3: 3f1v A:245-366 [246020] automated match to d4k3lb3 complexed with ca, cl; mutant

      4. Domain d3f1vb1: 3f1v B:1-122 [246021] automated match to d4k3la1 complexed with ca, cl; mutant

      5. Domain d3f1vb2: 3f1v B:123-244 [246022] automated match to d4k3la2 complexed with ca, cl; mutant

      6. Domain d3f1vb3: 3f1v B:245-366 [246023] automated match to d4k3lb3 complexed with ca, cl; mutant

5. Fruit fly (Drosophila melanogaster) [TaxId:7227] [234655] (1 PDB entry)

   • Domains for 4hk1:

     1. Domain d4hk1a1: 4hk1 A:-2-126 [234656] automated match to d1plqa1

     2. Domain d4hk1a2: 4hk1 A:127-254 [234657] automated match to d1plqa2

6. Human (Homo sapiens) [TaxId:9606] [254935] (1 PDB entry)
   • Domains for 1w60:

     1. Domain d1w60a1: 1w60 A:1-126 [120648] automated match to d1plqa1

     2. Domain d1w60a2: 1w60 A:127-255 [120649] automated match to d1plqa2

     3. Domain d1w60b1: 1w60 B:1-126 [120650] automated match to d1plqa1

     4. Domain d1w60b2: 1w60 B:127-255 [120651] automated match to d1plqa2

7. Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [256684] (1 PDB entry)

   • Domains for 4cs5:

     1. Domain d4cs5a1: 4cs5 A:1-126 [256687] automated match to d1plqa1

     2. Domain d4cs5a2: 4cs5 A:127-255 [256688] automated match to d1plqa2

     3. Domain d4cs5b1: 4cs5 B:1-126 [256685] automated match to d1plqa1

     4. Domain d4cs5b2: 4cs5 B:127-254 [256686] automated match to d1plqa2

     5. Domain d4cs5c1: 4cs5 C:1-126 [262628] automated match to d1plqa1

     6. Domain d4cs5c2: 4cs5 C:127-254 [262629] automated match to d1plqa2

8. Pseudomonas aeruginosa [TaxId:983919] [259535] (1 PDB entry)

   • Domains for 4tr8:

     1. Domain d4tr8b1: 4tr8 B:0-117 [259536] automated match to d1vpka1 complexed with na

     2. Domain d4tr8b2: 4tr8 B:122-245 [259537] automated match to d1vpka2 complexed with na

     3. Domain d4tr8b3: 4tr8 B:246-367 [259538] automated match to d1vpka3 complexed with na

9. Sulfolobus solfataricus [TaxId:2287] [225132] (4 PDB entries)

   1. Domains for 2hii:

      1. Domain d2hiib1: 2hii B:2-127 [204552] automated match to d1ud9a1

      2. Domain d2hiib2: 2hii B:128-244 [204553] automated match to d1ud9a2

      3. Domain d2hiic1: 2hii C:1-126 [204554] automated match to d1ud9a1

      4. Domain d2hiic2: 2hii C:127-243 [204555] automated match to d1ud9a2

      5. Domain d2hiiy1: 2hii Y:2-127 [204556] automated match to d1ud9a1

      6. Domain d2hiiy2: 2hii Y:128-244 [204557] automated match to d1ud9a2

      7. Domain d2hiiz1: 2hii Z:1-126 [204558] automated match to d1ud9a1

      8. Domain d2hiiz2: 2hii Z:127-243 [204559] automated match to d1ud9a2

   2. Domains for 2ix2:

      1. Domain d2ix2b1: 2ix2 B:1-126 [204888] automated match to d1ud9a1

      2. Domain d2ix2b2: 2ix2 B:127-245 [204889] automated match to d1ud9a2

      3. Domain d2ix2c1: 2ix2 C:10-141 [204890] automated match to d1ud9a1

      4. Domain d2ix2c2: 2ix2 C:142-259 [204891] automated match to d1ud9a2

   3. Domains for 2izo:

      1. Domain d2izob1: 2izo B:1-127 [204912] automated match to d1ud9a1 protein/DNA complex; complexed with mg, zn

      2. Domain d2izob2: 2izo B:128-245 [204913] automated match to d1ud9a2 protein/DNA complex; complexed with mg, zn

   4. Domains for 3fds:

      1. Domain d3fdsd1: 3fds D:1-127 [209862] Other proteins in same PDB: d3fdsa1, d3fdsa2 automated match to d1ud9a1 protein/DNA complex; complexed with 1pe, edo, gol, peg, pge

      2. Domain d3fdsd2: 3fds D:128-245 [209863] Other proteins in same PDB: d3fdsa1, d3fdsa2 automated match to d1ud9a2 protein/DNA complex; complexed with 1pe, edo, gol, peg, pge

10. Sulfolobus solfataricus [TaxId:273057] [225354] (3 PDB entries)

    1. Domains for 2ijx:

       1. Domain d2ijxa1: 2ijx A:1-126 [204796] automated match to d1ud9a1 complexed with edo

       2. Domain d2ijxa2: 2ijx A:127-244 [204797] automated match to d1ud9a2 complexed with edo

       3. Domain d2ijxb1: 2ijx B:1-126 [204798] automated match to d1ud9a1 complexed with edo

       4. Domain d2ijxb2: 2ijx B:127-244 [204799] automated match to d1ud9a2 complexed with edo

       5. Domain d2ijxc1: 2ijx C:1-126 [204800] automated match to d1ud9a1 complexed with edo

       6. Domain d2ijxc2: 2ijx C:127-244 [204801] automated match to d1ud9a2 complexed with edo

       7. Domain d2ijxd1: 2ijx D:1-126 [204802] automated match to d1ud9a1 complexed with edo

       8. Domain d2ijxd2: 2ijx D:127-244 [204803] automated match to d1ud9a2 complexed with edo

    2. Domains for 2io4:

       1. Domain d2io4b1: 2io4 B:1-127 [204830] automated match to d1ud9a1 complexed with ca, mpd

       2. Domain d2io4b2: 2io4 B:128-246 [204831] automated match to d1ud9a2 complexed with ca, mpd

       3. Domain d2io4d1: 2io4 D:1-127 [204832] automated match to d1ud9a1 complexed with ca, mpd

       4. Domain d2io4d2: 2io4 D:128-245 [204833] automated match to d1ud9a2 complexed with ca, mpd

    3. Domains for 2nti:

       1. Domain d2ntib1: 2nti B:1-127 [205162] automated match to d1ud9a1 complexed with 7pg, br, k

       2. Domain d2ntib2: 2nti B:128-245 [205163] automated match to d1ud9a2 complexed with 7pg, br, k

       3. Domain d2ntic1: 2nti C:1-126 [205164] automated match to d1ud9a1 complexed with 7pg, br, k

       4. Domain d2ntic2: 2nti C:127-244 [205165] automated match to d1ud9a2 complexed with 7pg, br, k

       5. Domain d2ntie1: 2nti E:1-127 [205166] automated match to d1ud9a1 complexed with 7pg, br, k

       6. Domain d2ntie2: 2nti E:128-246 [205167] automated match to d1ud9a2 complexed with 7pg, br, k

       7. Domain d2ntif1: 2nti F:1-126 [205168] automated match to d1ud9a1 complexed with 7pg, br, k

       8. Domain d2ntif2: 2nti F:127-244 [205169] automated match to d1ud9a2 complexed with 7pg, br, k

       9. Domain d2ntih1: 2nti H:1-127 [205170] automated match to d1ud9a1 complexed with 7pg, br, k

       10. Domain d2ntih2: 2nti H:128-246 [205171] automated match to d1ud9a2 complexed with 7pg, br, k

       11. Domain d2ntii1: 2nti I:1-126 [205172] automated match to d1ud9a1 complexed with 7pg, br, k

       12. Domain d2ntii2: 2nti I:127-244 [205173] automated match to d1ud9a2 complexed with 7pg, br, k

11. Sulfolobus tokodaii [TaxId:273063] [231791] (2 PDB entries)

    1. Domains for 3aix:

       1. Domain d3aixa1: 3aix A:1-126 [231792] automated match to d2hiiy1 complexed with so4

       2. Domain d3aixa2: 3aix A:127-245 [231805] automated match to d2hiiy2 complexed with so4

    2. Domains for 3aiz:

       1. Domain d3aizc1: 3aiz C:1-126 [231793] automated match to d2hiiy1 complexed with so4

       2. Domain d3aizc2: 3aiz C:127-246 [231803] automated match to d2hiiy2 complexed with so4

       3. Domain d3aizd1: 3aiz D:1-126 [231794] automated match to d2hiiy1 complexed with so4

       4. Domain d3aizd2: 3aiz D:127-245 [231804] automated match to d2hiiy2 complexed with so4

12. Thermococcus kodakarensis [TaxId:311400] [226061] (2 PDB entries)

    1. Domains for 3lx1:

       1. Domain d3lx1a1: 3lx1 A:2-122 [265042] automated match to d1iz5a1 complexed with so4

       2. Domain d3lx1a2: 3lx1 A:123-247 [265043] automated match to d1iz4a2 complexed with so4

    2. Domains for 3lx2:

       1. Domain d3lx2a1: 3lx2 A:2-117 [213081] automated match to d1ge8a1 complexed with so4

       2. Domain d3lx2a2: 3lx2 A:118-248 [213082] automated match to d1ge8a2 complexed with so4

       3. Domain d3lx2b1: 3lx2 B:2-117 [213083] automated match to d1ge8a1 complexed with so4

       4. Domain d3lx2b2: 3lx2 B:118-247 [213084] automated match to d1ge8a2 complexed with so4

       5. Domain d3lx2c1: 3lx2 C:2-117 [213085] automated match to d1ge8a1 complexed with so4

       6. Domain d3lx2c2: 3lx2 C:118-247 [213086] automated match to d1ge8a2 complexed with so4

More info for Protein automated matches from d.131.1.0: automated matches

Timeline for Protein automated matches from d.131.1.0: automated matches:

• Protein automated matches from d.131.1.0: automated matches first appeared in SCOPe 2.03
  
• Protein automated matches from d.131.1.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from d.131.1.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from d.131.1.0: automated matches appears in the current release, SCOPe 2.08