Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1360440Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
    3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
    possible rudiment form of Rossmann-fold domain
  4. 1360441Superfamily c.30.1: PreATP-grasp domain [52440] (9 families) (S)
    precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
  5. 1360707Family c.30.1.0: automated matches [227183] (1 protein)
    not a true family
  6. 1360708Protein automated matches [226903] (19 species)
    not a true protein

Species:

  1. 1360709Burkholderia ambifaria [TaxId:398577] [226365] (1 PDB entry)
  2. 1360712Burkholderia pseudomallei [TaxId:320372] [226351] (1 PDB entry)
  3. 1360717Burkholderia xenovorans [TaxId:266265] [226415] (1 PDB entry)
  4. 1360722Coxiella burnetii [TaxId:227377] [226218] (1 PDB entry)
  5. 1360725Enterococcus faecalis [TaxId:1351] [226473] (1 PDB entry)
  6. 1360728Human (Homo sapiens) [TaxId:9606] [225246] (1 PDB entry)
  7. 1360731Mycobacterium tuberculosis [TaxId:1773] [225851] (1 PDB entry)
  8. 1360734Salmonella enterica [TaxId:90371] [226056] (1 PDB entry)
  9. 1360739Salmonella typhimurium [TaxId:90371] [225723] (1 PDB entry)
  10. 1360744Staphylococcus aureus [TaxId:1280] [225145] (2 PDB entries)
    1. Domains for 2i80:
      1. 1360745Domain d2i80a1: 2i80 A:3-128 [204737]
        Other proteins in same PDB: d2i80a2, d2i80b2
        automated match to d1ehib1
        complexed with g1l
      2. 1360746Domain d2i80b1: 2i80 B:3-128 [204739]
        Other proteins in same PDB: d2i80a2, d2i80b2
        automated match to d1ehib1
        complexed with g1l
    2. Domains for 3n8d:
      1. 1360747Domain d3n8da1: 3n8d A:2-128 [213785]
        Other proteins in same PDB: d3n8da2, d3n8db2
        automated match to d1ehib1
        complexed with anp, cl, so4
      2. 1360748Domain d3n8db1: 3n8d B:2-128 [213787]
        Other proteins in same PDB: d3n8da2, d3n8db2
        automated match to d1ehib1
        complexed with anp, cl, so4
  11. 1360749Staphylococcus aureus [TaxId:93062] [225143] (2 PDB entries)
    1. Domains for 2i87:
      1. 1360750Domain d2i87a1: 2i87 A:3-128 [204746]
        Other proteins in same PDB: d2i87a2, d2i87b2
        automated match to d1ehib1
        complexed with so4
      2. 1360751Domain d2i87b1: 2i87 B:3-128 [204748]
        Other proteins in same PDB: d2i87a2, d2i87b2
        automated match to d1ehib1
        complexed with so4
    2. Domains for 2i8c:
      1. 1360752Domain d2i8ca1: 2i8c A:3-128 [204750]
        Other proteins in same PDB: d2i8ca2, d2i8cb2
        automated match to d1ehib1
        complexed with adp, mg, so4
      2. 1360753Domain d2i8cb1: 2i8c B:3-128 [204752]
        Other proteins in same PDB: d2i8ca2, d2i8cb2
        automated match to d1ehib1
        complexed with adp, mg, so4
  12. 1360754Streptococcus mutans [TaxId:1309] [232664] (1 PDB entry)
  13. 1360757Thermus caldophilus [TaxId:272] [225124] (1 PDB entry)
  14. 1360759Thermus thermophilus [TaxId:274] [226819] (3 PDB entries)
    1. Domains for 2zdg:
      1. 1360764Domain d2zdga1: 2zdg A:1-114 [207822]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
      2. 1360765Domain d2zdgb1: 2zdg B:1-114 [207824]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
      3. 1360766Domain d2zdgc1: 2zdg C:1-114 [207826]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
      4. 1360767Domain d2zdgd1: 2zdg D:1-114 [207828]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
    2. Domains for 2zdh:
      1. 1360760Domain d2zdha1: 2zdh A:1-114 [207830]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
      2. 1360761Domain d2zdhb1: 2zdh B:1-114 [207832]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
      3. 1360762Domain d2zdhc1: 2zdh C:1-114 [207834]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
      4. 1360763Domain d2zdhd1: 2zdh D:1-114 [207836]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
    3. Domains for 2zdq:
      1. 1360768Domain d2zdqa1: 2zdq A:1-114 [207838]
        Other proteins in same PDB: d2zdqa2, d2zdqb2
        automated match to d1e4ea1
        complexed with atp, dal
      2. 1360769Domain d2zdqb1: 2zdq B:1-114 [207840]
        Other proteins in same PDB: d2zdqa2, d2zdqb2
        automated match to d1e4ea1
        complexed with atp, dal
  15. 1360770Thermus thermophilus [TaxId:274] [226603] (1 PDB entry)
  16. 1360773Thermus thermophilus [TaxId:300852] [225372] (3 PDB entries)
    1. Domains for 2yzg:
      1. 1360777Domain d2yzga1: 2yzg A:1-114 [207743]
        Other proteins in same PDB: d2yzga2, d2yzgb2, d2yzgc2
        automated match to d1e4ea1
      2. 1360778Domain d2yzgb1: 2yzg B:1-114 [207745]
        Other proteins in same PDB: d2yzga2, d2yzgb2, d2yzgc2
        automated match to d1e4ea1
      3. 1360779Domain d2yzgc1: 2yzg C:1-114 [207747]
        Other proteins in same PDB: d2yzga2, d2yzgb2, d2yzgc2
        automated match to d1e4ea1
    2. Domains for 2yzm:
      1. 1360774Domain d2yzma1: 2yzm A:1-114 [207749]
        Other proteins in same PDB: d2yzma2, d2yzmb2, d2yzmc2
        automated match to d1e4ea1
        complexed with dal
      2. 1360775Domain d2yzmb1: 2yzm B:1-114 [207751]
        Other proteins in same PDB: d2yzma2, d2yzmb2, d2yzmc2
        automated match to d1e4ea1
        complexed with dal
      3. 1360776Domain d2yzmc1: 2yzm C:1-114 [207753]
        Other proteins in same PDB: d2yzma2, d2yzmb2, d2yzmc2
        automated match to d1e4ea1
        complexed with dal
    3. Domains for 2yzn:
      1. 1360780Domain d2yzna1: 2yzn A:1-114 [207755]
        Other proteins in same PDB: d2yzna2, d2yznb2, d2yznc2
        automated match to d1e4ea1
        complexed with anp
      2. 1360781Domain d2yznb1: 2yzn B:1-114 [207757]
        Other proteins in same PDB: d2yzna2, d2yznb2, d2yznc2
        automated match to d1e4ea1
        complexed with anp
      3. 1360782Domain d2yznc1: 2yzn C:1-114 [207759]
        Other proteins in same PDB: d2yzna2, d2yznb2, d2yznc2
        automated match to d1e4ea1
        complexed with anp
  17. 1360783Xanthomonas oryzae [TaxId:291331] [226135] (1 PDB entry)
  18. 1360785Xanthomonas oryzae [TaxId:342109] [225704] (4 PDB entries)
    1. Domain for 3e5n:
    2. Domain for 3rfc:
    3. Domain for 4l1k:
    4. Domain for 4me6:
  19. 1360790Yersinia pestis [TaxId:214092] [226276] (1 PDB entry)

More info for Protein automated matches from c.30.1.0: automated matches

Timeline for Protein automated matches from c.30.1.0: automated matches: