Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1650133Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1653844Superfamily d.58.18: ACT-like [55021] (15 families) (S)
    regulatory domain linked to a wide range of metabolic enzymes
  5. 1654045Family d.58.18.0: automated matches [227175] (1 protein)
    not a true family
  6. 1654046Protein automated matches [226892] (5 species)
    not a true protein

Species:

  1. 1654047Escherichia coli K-12 [TaxId:83333] [233744] (1 PDB entry)
  2. 1654052Helicobacter pylori [TaxId:210] [233241] (1 PDB entry)
  3. 1654055Helicobacter pylori [TaxId:563041] [226192] (2 PDB entries)
    1. Domains for 2y3y:
      1. 1654056Domain d2y3ya_: 2y3y A: [207462]
        automated match to d1q5ya_
        complexed with epe, ni, peg
      2. 1654057Domain d2y3yb_: 2y3y B: [207463]
        automated match to d1q5ya_
        complexed with epe, ni, peg
      3. 1654058Domain d2y3yc_: 2y3y C: [207464]
        automated match to d1q5ya_
        complexed with epe, ni, peg
      4. 1654059Domain d2y3yd_: 2y3y D: [207465]
        automated match to d1q5ya_
        complexed with epe, ni, peg
    2. Domains for 3qsi:
      1. 1654060Domain d3qsia_: 3qsi A: [248980]
        automated match to d2y3ya_
        complexed with ni, so4
      2. 1654061Domain d3qsib_: 3qsi B: [248981]
        automated match to d2y3ya_
        complexed with ni, so4
      3. 1654062Domain d3qsic_: 3qsi C: [248982]
        automated match to d2y3ya_
        complexed with ni, so4
      4. 1654063Domain d3qsid_: 3qsi D: [248983]
        automated match to d2y3ya_
        complexed with ni, so4
      5. 1654064Domain d3qsie_: 3qsi E: [248984]
        automated match to d2y3ya_
        complexed with ni, so4
      6. 1654065Domain d3qsif_: 3qsi F: [248985]
        automated match to d2y3ya_
        complexed with ni, so4
      7. 1654066Domain d3qsig_: 3qsi G: [248986]
        automated match to d2y3ya_
        complexed with ni, so4
      8. 1654067Domain d3qsih_: 3qsi H: [248987]
        automated match to d2y3ya_
        complexed with ni, so4
      9. 1654068Domain d3qsii_: 3qsi I: [248988]
        automated match to d2y3ya_
        complexed with ni, so4
      10. 1654069Domain d3qsij_: 3qsi J: [248989]
        automated match to d2y3ya_
        complexed with ni, so4
  4. 1654070Helicobacter pylori [TaxId:85962] [230608] (9 PDB entries)
    1. Domains for 2ca9:
      1. 1654075Domain d2ca9a2: 2ca9 A:61-146 [230616]
        Other proteins in same PDB: d2ca9a1, d2ca9b1
        automated match to d2bj9a2
        complexed with fmt, gol
      2. 1654076Domain d2ca9b2: 2ca9 B:61-147 [230615]
        Other proteins in same PDB: d2ca9a1, d2ca9b1
        automated match to d2bj9a2
        complexed with fmt, gol
    2. Domains for 2cad:
      1. 1654079Domain d2cada2: 2cad A:61-146 [230611]
        Other proteins in same PDB: d2cada1, d2cadb1
        automated match to d2bj9a2
        complexed with cit, fmt, gol, ni
      2. 1654080Domain d2cadb2: 2cad B:62-147 [230612]
        Other proteins in same PDB: d2cada1, d2cadb1
        automated match to d2bj9a2
        complexed with cit, fmt, gol, ni
    3. Domains for 2caj:
      1. 1654083Domain d2caja2: 2caj A:61-141 [230613]
        Other proteins in same PDB: d2caja1, d2cajb1
        automated match to d2bj9a2
        complexed with cl, gol, ni
      2. 1654084Domain d2cajb2: 2caj B:61-147 [230617]
        Other proteins in same PDB: d2caja1, d2cajb1
        automated match to d2bj9a2
        complexed with cl, gol, ni
    4. Domains for 2wvb:
      1. 1654073Domain d2wvba2: 2wvb A:61-142 [231504]
        Other proteins in same PDB: d2wvba1, d2wvbb1
        automated match to d2bj9a2
        complexed with fmt, gol
      2. 1654074Domain d2wvbb2: 2wvb B:61-147 [231506]
        Other proteins in same PDB: d2wvba1, d2wvbb1
        automated match to d2bj9a2
        complexed with fmt, gol
    5. Domains for 2wvc:
      1. 1654077Domain d2wvca2: 2wvc A:61-142 [231511]
        Other proteins in same PDB: d2wvca1, d2wvcb1
        automated match to d2bj9a2
        complexed with fmt, gol, so4
      2. 1654078Domain d2wvcb2: 2wvc B:61-148 [231508]
        Other proteins in same PDB: d2wvca1, d2wvcb1
        automated match to d2bj9a2
        complexed with fmt, gol, so4
    6. Domains for 2wvd:
      1. 1654085Domain d2wvda2: 2wvd A:61-141 [231512]
        Other proteins in same PDB: d2wvda1, d2wvdb1, d2wvdc1, d2wvdd1
        automated match to d2bj9a2
        complexed with gol, so4
      2. 1654086Domain d2wvdb2: 2wvd B:61-143 [231514]
        Other proteins in same PDB: d2wvda1, d2wvdb1, d2wvdc1, d2wvdd1
        automated match to d2bj9a2
        complexed with gol, so4
      3. 1654087Domain d2wvdc2: 2wvd C:61-145 [238980]
        Other proteins in same PDB: d2wvda1, d2wvdb1, d2wvdc1, d2wvdd1
        automated match to d2wvdb2
        complexed with gol, so4
      4. 1654088Domain d2wvdd2: 2wvd D:61-145 [238982]
        Other proteins in same PDB: d2wvda1, d2wvdb1, d2wvdc1, d2wvdd1
        automated match to d2wvdb2
        complexed with gol, so4
    7. Domains for 2wve:
      1. 1654081Domain d2wvea2: 2wve A:61-142 [231516]
        Other proteins in same PDB: d2wvea1, d2wveb1
        automated match to d2bj9a2
        complexed with cit, gol, so4, trs
      2. 1654082Domain d2wveb2: 2wve B:61-141 [231518]
        Other proteins in same PDB: d2wvea1, d2wveb1
        automated match to d2bj9a2
        complexed with cit, gol, so4, trs
    8. Domains for 2wvf:
      1. 1654071Domain d2wvfa2: 2wvf A:61-142 [244310]
        Other proteins in same PDB: d2wvfa1, d2wvfb1
        automated match to d2wvcb2
        complexed with fmt, gol, ni, so4
      2. 1654072Domain d2wvfb2: 2wvf B:61-147 [244312]
        Other proteins in same PDB: d2wvfa1, d2wvfb1
        automated match to d2wvcb2
        complexed with fmt, gol, ni, so4
    9. Domains for 3lgh:
      1. 1654089Domain d3lgha2: 3lgh A:62-142 [247457]
        Other proteins in same PDB: d3lgha1, d3lghb1
        automated match to d2cada2
        complexed with mg, ni
      2. 1654090Domain d3lghb2: 3lgh B:61-147 [247459]
        Other proteins in same PDB: d3lgha1, d3lghb1
        automated match to d2cajb2
        complexed with mg, ni
      3. 1654091Domain d3lghc_: 3lgh C: [247460]
        Other proteins in same PDB: d3lgha1, d3lghb1
        automated match to d2cada2
        complexed with mg, ni
      4. 1654092Domain d3lghd_: 3lgh D: [247461]
        Other proteins in same PDB: d3lgha1, d3lghb1
        automated match to d2cada2
        complexed with mg, ni
  5. 1654093Methanocaldococcus jannaschii [TaxId:2190] [255768] (3 PDB entries)
    1. Domains for 3c1m:
      1. 1654094Domain d3c1ma2: 3c1m A:304-403 [245413]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa3
        complexed with anp, asp, fmt, mg
      2. 1654095Domain d3c1ma3: 3c1m A:404-470 [245414]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa2
        complexed with anp, asp, fmt, mg
      3. 1654096Domain d3c1mb2: 3c1m B:304-403 [245416]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa3
        complexed with anp, asp, fmt, mg
      4. 1654097Domain d3c1mb3: 3c1m B:404-470 [245417]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa2
        complexed with anp, asp, fmt, mg
      5. 1654098Domain d3c1mc2: 3c1m C:304-403 [245419]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa3
        complexed with anp, asp, fmt, mg
      6. 1654099Domain d3c1mc3: 3c1m C:404-470 [245420]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa2
        complexed with anp, asp, fmt, mg
      7. 1654100Domain d3c1md2: 3c1m D:304-403 [245422]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa3
        complexed with anp, asp, fmt, mg
      8. 1654101Domain d3c1md3: 3c1m D:404-470 [245423]
        Other proteins in same PDB: d3c1ma1, d3c1mb1, d3c1mc1, d3c1md1
        automated match to d2hmfa2
        complexed with anp, asp, fmt, mg
    2. Domains for 3c1n:
      1. 1654106Domain d3c1na2: 3c1n A:306-403 [245425]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa3
        complexed with thr
      2. 1654107Domain d3c1na3: 3c1n A:404-469 [245426]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa2
        complexed with thr
      3. 1654108Domain d3c1nb2: 3c1n B:305-403 [245428]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa3
        complexed with thr
      4. 1654109Domain d3c1nb3: 3c1n B:404-469 [245429]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa2
        complexed with thr
      5. 1654110Domain d3c1nc2: 3c1n C:307-403 [245431]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa3
        complexed with thr
      6. 1654111Domain d3c1nc3: 3c1n C:404-469 [245432]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa2
        complexed with thr
      7. 1654112Domain d3c1nd2: 3c1n D:306-403 [245434]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa3
        complexed with thr
      8. 1654113Domain d3c1nd3: 3c1n D:404-469 [245435]
        Other proteins in same PDB: d3c1na1, d3c1nb1, d3c1nc1, d3c1nd1
        automated match to d2hmfa2
        complexed with thr
    3. Domains for 3c20:
      1. 1654102Domain d3c20a2: 3c20 A:304-403 [245441]
        Other proteins in same PDB: d3c20a1, d3c20b1
        automated match to d2hmfa3
        complexed with asp, fmt
      2. 1654103Domain d3c20a3: 3c20 A:404-470 [245442]
        Other proteins in same PDB: d3c20a1, d3c20b1
        automated match to d2hmfa2
        complexed with asp, fmt
      3. 1654104Domain d3c20b2: 3c20 B:304-403 [245444]
        Other proteins in same PDB: d3c20a1, d3c20b1
        automated match to d2hmfa3
        complexed with asp, fmt
      4. 1654105Domain d3c20b3: 3c20 B:404-470 [245445]
        Other proteins in same PDB: d3c20a1, d3c20b1
        automated match to d2hmfa2
        complexed with asp, fmt

More info for Protein automated matches from d.58.18.0: automated matches

Timeline for Protein automated matches from d.58.18.0: automated matches: