Class d: Alpha and beta proteins (a+b) [53931] (381 folds) |
Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily) contains large mixed beta-sheet |
Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) |
Family d.104.1.0: automated matches [227172] (1 protein) not a true family |
Protein automated matches [226887] (9 species) not a true protein |
Bacillus stearothermophilus [TaxId:1422] [225707] (2 PDB entries) |
Domain d3e9ha2: 3e9h A:146-492 [209426] Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1 automated match to d1bbua2 protein/RNA complex; complexed with kaa, mg |
Domain d3e9hb2: 3e9h B:146-492 [209428] Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1 automated match to d1bbua2 protein/RNA complex; complexed with kaa, mg |
Domain d3e9hc2: 3e9h C:146-492 [209430] Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1 automated match to d1bbua2 protein/RNA complex; complexed with kaa, mg |
Domain d3e9hd2: 3e9h D:146-492 [209432] Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1 automated match to d1bbua2 protein/RNA complex; complexed with kaa, mg |
Domain d3e9ia2: 3e9i A:146-492 [209434] Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1 automated match to d1bbua2 protein/RNA complex; complexed with 1pe, mg, xah |
Domain d3e9ib2: 3e9i B:146-492 [209436] Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1 automated match to d1bbua2 protein/RNA complex; complexed with 1pe, mg, xah |
Domain d3e9ic2: 3e9i C:146-492 [209438] Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1 automated match to d1bbua2 protein/RNA complex; complexed with 1pe, mg, xah |
Domain d3e9id2: 3e9i D:146-492 [209440] Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1 automated match to d1bbua2 protein/RNA complex; complexed with 1pe, mg, xah |
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267892] (3 PDB entries) |
Domain d3ugqa1: 3ugq A:33-340 [265514] Other proteins in same PDB: d3ugqa2 automated match to d4hwta1 complexed with k, so4, zn |
Domain d3uh0a1: 3uh0 A:32-340 [265516] Other proteins in same PDB: d3uh0a2 automated match to d4hwta1 protein/RNA complex; complexed with so4, tsb, zn |
Domain d4eo4a1: 4eo4 A:36-340 [266223] Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2 automated match to d4hwta1 protein/RNA complex; complexed with ssa, zn |
Domain d4eo4b1: 4eo4 B:38-340 [266225] Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2 automated match to d4hwta1 protein/RNA complex; complexed with ssa, zn |
Domain d4eo4c1: 4eo4 C:36-340 [266227] Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2 automated match to d4hwta1 protein/RNA complex; complexed with ssa, zn |
Domain d4eo4d1: 4eo4 D:36-340 [266229] Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2 automated match to d4hwta1 protein/RNA complex; complexed with ssa, zn |
Escherichia coli [TaxId:562] [256019] (1 PDB entry) |
Domain d3pcoa_: 3pco A: [248462] Other proteins in same PDB: d3pcoc1 automated match to d1jjca_ protein/DNA complex; protein/RNA complex; complexed with amp, phe |
Domain d3pcoc2: 3pco C:91-327 [248464] Other proteins in same PDB: d3pcoc1 automated match to d1jjca_ protein/DNA complex; protein/RNA complex; complexed with amp, phe |
Human (Homo sapiens) [TaxId:9606] [225403] (8 PDB entries) |
Domain d3bjua2: 3bju A:222-576 [208648] Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1 automated match to d1bbua2 complexed with atp, ca, lys |
Domain d3bjub2: 3bju B:223-574 [208650] Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1 automated match to d1bbua2 complexed with atp, ca, lys |
Domain d3bjuc2: 3bju C:222-575 [208652] Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1 automated match to d1bbua2 complexed with atp, ca, lys |
Domain d3bjud2: 3bju D:222-575 [208654] Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1 automated match to d1bbua2 complexed with atp, ca, lys |
Domain d4dpga2: 4dpg A:222-575 [219906] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgb2: 4dpg B:222-576 [219908] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgc2: 4dpg C:222-575 [219910] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgd2: 4dpg D:222-575 [219912] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpge2: 4dpg E:222-575 [219914] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgf2: 4dpg F:222-575 [219916] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgg2: 4dpg G:222-575 [219918] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgh2: 4dpg H:222-575 [219920] Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1 automated match to d1bbua2 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4hwta1: 4hwt A:354-644 [227928] Other proteins in same PDB: d4hwta2, d4hwtb2 automated match to d1qf6a4 protein/RNA complex; complexed with 1b2, zn |
Domain d4hwtb1: 4hwt B:354-644 [227933] Other proteins in same PDB: d4hwta2, d4hwtb2 automated match to d1qf6a4 protein/RNA complex; complexed with 1b2, zn |
Domain d4j15a2: 4j15 A:153-495 [223510] Other proteins in same PDB: d4j15a1, d4j15b1 automated match to d1eova2 protein/RNA complex; complexed with gol |
Domain d4j15b2: 4j15 B:153-495 [223512] Other proteins in same PDB: d4j15a1, d4j15b1 automated match to d1eova2 protein/RNA complex; complexed with gol |
Domain d4p3na1: 4p3n A:322-611 [269745] Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, zn |
Domain d4p3nb1: 4p3n B:322-611 [269739] Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, zn |
Domain d4p3nc1: 4p3n C:322-611 [269741] Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, zn |
Domain d4p3nd1: 4p3n D:322-611 [269743] Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2 automated match to d4hwra1 protein/RNA complex; complexed with 2cr, zn |
Domain d4ttva1: 4ttv A:321-611 [277576] Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2 automated match to d4hwra1 protein/RNA complex; complexed with bc9, zn |
Domain d4ttvb1: 4ttv B:321-611 [277574] Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2 automated match to d4hwra1 protein/RNA complex; complexed with bc9, zn |
Domain d4ttvc1: 4ttv C:321-611 [277579] Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2 automated match to d4hwra1 protein/RNA complex; complexed with bc9, zn |
Domain d4ttvd1: 4ttv D:321-611 [277581] Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2 automated match to d4hwra1 protein/RNA complex; complexed with bc9, zn |
Domain d4ycua2: 4ycu A:222-576 [273829] Other proteins in same PDB: d4ycua1, d4ycub1 automated match to d3bjua2 protein/RNA complex; complexed with gol, krs, lys |
Domain d4ycub2: 4ycu B:222-575 [273831] Other proteins in same PDB: d4ycua1, d4ycub1 automated match to d3bjua2 protein/RNA complex; complexed with gol, krs, lys |
Domain d4ycwa2: 4ycw A:222-575 [273823] Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1 automated match to d3bjua2 protein/RNA complex; complexed with krs, lys; mutant |
Domain d4ycwb2: 4ycw B:222-575 [273825] Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1 automated match to d3bjua2 protein/RNA complex; complexed with krs, lys; mutant |
Domain d4ycwe2: 4ycw E:222-575 [273827] Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1 automated match to d3bjua2 protein/RNA complex; complexed with krs, lys; mutant |
Domain d4ycwf2: 4ycw F:222-575 [273821] Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1 automated match to d3bjua2 protein/RNA complex; complexed with krs, lys; mutant |
Plasmodium falciparum [TaxId:36329] [234567] (2 PDB entries) |
Domain d4h02a2: 4h02 A:229-581 [234568] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4h02b2: 4h02 B:229-581 [234569] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4h02c2: 4h02 C:229-583 [234576] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4h02d2: 4h02 D:229-581 [234577] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4h02e2: 4h02 E:229-581 [234578] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4h02f2: 4h02 F:229-581 [234580] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4h02g2: 4h02 G:229-581 [234579] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4h02h2: 4h02 H:229-581 [234581] Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1 automated match to d4dpgb2 |
Domain d4pg3a2: 4pg3 A:230-581 [258137] Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1 automated match to d3bjua2 complexed with krs, lys |
Domain d4pg3b2: 4pg3 B:229-581 [263477] Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1 automated match to d3bjua2 complexed with krs, lys |
Domain d4pg3c2: 4pg3 C:229-581 [263479] Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1 automated match to d3bjua2 complexed with krs, lys |
Domain d4pg3d2: 4pg3 D:230-581 [258135] Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1 automated match to d3bjua2 complexed with krs, lys |
Pyrococcus horikoshii [TaxId:53953] [230395] (3 PDB entries) |
Domain d1x54a2: 1x54 A:105-434 [230396] Other proteins in same PDB: d1x54a1 automated match to d1b8aa2 protein/RNA complex; complexed with 4ad, mg, mpd |
Domain d1x55a2: 1x55 A:105-434 [230398] Other proteins in same PDB: d1x55a1 automated match to d1b8aa2 protein/RNA complex; complexed with mg, nss, po4 |
Domain d1x56a2: 1x56 A:105-434 [230400] Other proteins in same PDB: d1x56a1 automated match to d1b8aa2 |
Staphylococcus haemolyticus [TaxId:1283] [225371] (2 PDB entries) |
Domain d2rhqa_: 2rhq A: [206133] automated match to d1b7ya_ complexed with gax, zn |
Domain d2rhsa_: 2rhs A: [206134] automated match to d1b7ya_ complexed with gax, so4, zn |
Domain d2rhsc_: 2rhs C: [206135] automated match to d1b7ya_ complexed with gax, so4, zn |
Sulfolobus tokodaii [TaxId:273063] [230390] (1 PDB entry) |
Domain d1wyda2: 1wyd A:101-429 [230391] Other proteins in same PDB: d1wyda1, d1wydb1 automated match to d1b8aa2 complexed with cl, epe, so4 |
Domain d1wydb2: 1wyd B:101-429 [230393] Other proteins in same PDB: d1wyda1, d1wydb1 automated match to d1b8aa2 complexed with cl, epe, so4 |
Thermococcus kodakarensis [TaxId:311400] [226766] (3 PDB entries) |
Domain d3nela2: 3nel A:103-316,A:317-438 [213896] Other proteins in same PDB: d3nela1, d3nelb1 automated match to d1c0aa3 protein/RNA complex; complexed with asp |
Domain d3nelb2: 3nel B:103-316,B:317-438 [213898] Other proteins in same PDB: d3nela1, d3nelb1 automated match to d1c0aa3 protein/RNA complex; complexed with asp |
Domain d3nema2: 3nem A:103-316,A:317-438 [213900] Other proteins in same PDB: d3nema1, d3nemb1 automated match to d1c0aa3 protein/RNA complex; complexed with amo, atp, mg |
Domain d3nemb2: 3nem B:103-316,B:317-438 [213902] Other proteins in same PDB: d3nema1, d3nemb1 automated match to d1c0aa3 protein/RNA complex; complexed with amo, atp, mg |
Domain d3nena2: 3nen A:103-316,A:317-438 [213904] Other proteins in same PDB: d3nena1, d3nenb1 automated match to d1c0aa3 |
Domain d3nenb2: 3nen B:103-316,B:317-438 [213906] Other proteins in same PDB: d3nena1, d3nenb1 automated match to d1c0aa3 |
Timeline for Protein automated matches from d.104.1.0: automated matches: