Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1920668Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. 1920669Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) (S)
  5. 1921049Family d.104.1.0: automated matches [227172] (1 protein)
    not a true family
  6. 1921050Protein automated matches [226887] (9 species)
    not a true protein

Species:

  1. 1921051Bacillus stearothermophilus [TaxId:1422] [225707] (2 PDB entries)
    1. Domains for 3e9h:
      1. 1921052Domain d3e9ha2: 3e9h A:146-492 [209426]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      2. 1921053Domain d3e9hb2: 3e9h B:146-492 [209428]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      3. 1921054Domain d3e9hc2: 3e9h C:146-492 [209430]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      4. 1921055Domain d3e9hd2: 3e9h D:146-492 [209432]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
    2. Domains for 3e9i:
      1. 1921056Domain d3e9ia2: 3e9i A:146-492 [209434]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      2. 1921057Domain d3e9ib2: 3e9i B:146-492 [209436]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      3. 1921058Domain d3e9ic2: 3e9i C:146-492 [209438]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      4. 1921059Domain d3e9id2: 3e9i D:146-492 [209440]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
  2. 1921060Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267892] (3 PDB entries)
    1. Domain for 3ugq:
    2. Domain for 3uh0:
    3. Domains for 4eo4:
      1. 1921063Domain d4eo4a1: 4eo4 A:36-340 [266223]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      2. 1921064Domain d4eo4b1: 4eo4 B:38-340 [266225]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      3. 1921065Domain d4eo4c1: 4eo4 C:36-340 [266227]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      4. 1921066Domain d4eo4d1: 4eo4 D:36-340 [266229]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
  3. 1921067Escherichia coli [TaxId:562] [256019] (1 PDB entry)
  4. 1921070Human (Homo sapiens) [TaxId:9606] [225403] (8 PDB entries)
    1. Domains for 3bju:
      1. 1921073Domain d3bjua2: 3bju A:222-576 [208648]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      2. 1921074Domain d3bjub2: 3bju B:223-574 [208650]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      3. 1921075Domain d3bjuc2: 3bju C:222-575 [208652]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      4. 1921076Domain d3bjud2: 3bju D:222-575 [208654]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
    2. Domains for 4dpg:
      1. 1921081Domain d4dpga2: 4dpg A:222-575 [219906]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      2. 1921082Domain d4dpgb2: 4dpg B:222-576 [219908]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      3. 1921083Domain d4dpgc2: 4dpg C:222-575 [219910]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      4. 1921084Domain d4dpgd2: 4dpg D:222-575 [219912]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      5. 1921085Domain d4dpge2: 4dpg E:222-575 [219914]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      6. 1921086Domain d4dpgf2: 4dpg F:222-575 [219916]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      7. 1921087Domain d4dpgg2: 4dpg G:222-575 [219918]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      8. 1921088Domain d4dpgh2: 4dpg H:222-575 [219920]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
    3. Domains for 4hwt:
      1. 1921077Domain d4hwta1: 4hwt A:354-644 [227928]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
      2. 1921078Domain d4hwtb1: 4hwt B:354-644 [227933]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
    4. Domains for 4j15:
      1. 1921071Domain d4j15a2: 4j15 A:153-495 [223510]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
      2. 1921072Domain d4j15b2: 4j15 B:153-495 [223512]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
    5. Domains for 4p3n:
      1. 1921089Domain d4p3na1: 4p3n A:322-611 [269745]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      2. 1921090Domain d4p3nb1: 4p3n B:322-611 [269739]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      3. 1921091Domain d4p3nc1: 4p3n C:322-611 [269741]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      4. 1921092Domain d4p3nd1: 4p3n D:322-611 [269743]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
    6. Domains for 4ttv:
      1. 1921093Domain d4ttva1: 4ttv A:321-611 [277576]
        Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      2. 1921094Domain d4ttvb1: 4ttv B:321-611 [277574]
        Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      3. 1921095Domain d4ttvc1: 4ttv C:321-611 [277579]
        Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      4. 1921096Domain d4ttvd1: 4ttv D:321-611 [277581]
        Other proteins in same PDB: d4ttva2, d4ttvb2, d4ttvc2, d4ttvd2
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
    7. Domains for 4ycu:
      1. 1921079Domain d4ycua2: 4ycu A:222-576 [273829]
        Other proteins in same PDB: d4ycua1, d4ycub1
        automated match to d3bjua2
        protein/RNA complex; complexed with gol, krs, lys
      2. 1921080Domain d4ycub2: 4ycu B:222-575 [273831]
        Other proteins in same PDB: d4ycua1, d4ycub1
        automated match to d3bjua2
        protein/RNA complex; complexed with gol, krs, lys
    8. Domains for 4ycw:
      1. 1921097Domain d4ycwa2: 4ycw A:222-575 [273823]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      2. 1921098Domain d4ycwb2: 4ycw B:222-575 [273825]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      3. 1921099Domain d4ycwe2: 4ycw E:222-575 [273827]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      4. 1921100Domain d4ycwf2: 4ycw F:222-575 [273821]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
  5. 1921101Plasmodium falciparum [TaxId:36329] [234567] (2 PDB entries)
    1. Domains for 4h02:
      1. 1921106Domain d4h02a2: 4h02 A:229-581 [234568]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      2. 1921107Domain d4h02b2: 4h02 B:229-581 [234569]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      3. 1921108Domain d4h02c2: 4h02 C:229-583 [234576]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      4. 1921109Domain d4h02d2: 4h02 D:229-581 [234577]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      5. 1921110Domain d4h02e2: 4h02 E:229-581 [234578]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      6. 1921111Domain d4h02f2: 4h02 F:229-581 [234580]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      7. 1921112Domain d4h02g2: 4h02 G:229-581 [234579]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      8. 1921113Domain d4h02h2: 4h02 H:229-581 [234581]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
    2. Domains for 4pg3:
      1. 1921102Domain d4pg3a2: 4pg3 A:230-581 [258137]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      2. 1921103Domain d4pg3b2: 4pg3 B:229-581 [263477]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      3. 1921104Domain d4pg3c2: 4pg3 C:229-581 [263479]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      4. 1921105Domain d4pg3d2: 4pg3 D:230-581 [258135]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
  6. 1921114Pyrococcus horikoshii [TaxId:53953] [230395] (3 PDB entries)
    1. Domain for 1x54:
    2. Domain for 1x55:
    3. Domain for 1x56:
  7. 1921118Staphylococcus haemolyticus [TaxId:1283] [225371] (2 PDB entries)
    1. Domain for 2rhq:
    2. Domains for 2rhs:
      1. 1921120Domain d2rhsa_: 2rhs A: [206134]
        automated match to d1b7ya_
        complexed with gax, so4, zn
      2. 1921121Domain d2rhsc_: 2rhs C: [206135]
        automated match to d1b7ya_
        complexed with gax, so4, zn
  8. 1921122Sulfolobus tokodaii [TaxId:273063] [230390] (1 PDB entry)
  9. 1921125Thermococcus kodakarensis [TaxId:311400] [226766] (3 PDB entries)
    1. Domains for 3nel:
      1. 1921128Domain d3nela2: 3nel A:103-316,A:317-438 [213896]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
      2. 1921129Domain d3nelb2: 3nel B:103-316,B:317-438 [213898]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
    2. Domains for 3nem:
      1. 1921126Domain d3nema2: 3nem A:103-316,A:317-438 [213900]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
      2. 1921127Domain d3nemb2: 3nem B:103-316,B:317-438 [213902]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
    3. Domains for 3nen:
      1. 1921130Domain d3nena2: 3nen A:103-316,A:317-438 [213904]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3
      2. 1921131Domain d3nenb2: 3nen B:103-316,B:317-438 [213906]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3

More info for Protein automated matches from d.104.1.0: automated matches

Timeline for Protein automated matches from d.104.1.0: automated matches: