SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
contains large mixed beta-sheet
Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families)
Family d.104.1.0: automated matches [227172] (1 protein)
not a true family
Protein automated matches [226887] (8 species)
not a true protein

Species:

Bacillus stearothermophilus [TaxId:1422] [225707] (2 PDB entries)
1. Domains for 3e9h:
  1. Domain d3e9ha2: 3e9h A:146-492 [209426]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
  2. Domain d3e9hb2: 3e9h B:146-492 [209428]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
  3. Domain d3e9hc2: 3e9h C:146-492 [209430]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
  4. Domain d3e9hd2: 3e9h D:146-492 [209432]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
2. Domains for 3e9i:
  1. Domain d3e9ia2: 3e9i A:146-492 [209434]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
  2. Domain d3e9ib2: 3e9i B:146-492 [209436]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
  3. Domain d3e9ic2: 3e9i C:146-492 [209438]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
  4. Domain d3e9id2: 3e9i D:146-492 [209440]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
Escherichia coli [TaxId:562] [256019] (1 PDB entry)
- Domains for 3pco:
  1. Domain d3pcoa_: 3pco A: [248462]
    Other proteins in same PDB: d3pcoc1
    automated match to d1jjca_
    protein/DNA complex; protein/RNA complex; complexed with amp, phe
  2. Domain d3pcoc2: 3pco C:91-327 [248464]
    Other proteins in same PDB: d3pcoc1
    automated match to d1jjca_
    protein/DNA complex; protein/RNA complex; complexed with amp, phe

Human (Homo sapiens) [TaxId:9606] [225403] (4 PDB entries)

Domains for 3bju:
1. Domain d3bjua2: 3bju A:222-576 [208648]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys
2. Domain d3bjub2: 3bju B:223-574 [208650]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys
3. Domain d3bjuc2: 3bju C:222-575 [208652]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys
4. Domain d3bjud2: 3bju D:222-575 [208654]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys

Domains for 4dpg:

Domain d4dpga2: 4dpg A:222-575 [219906]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgb2: 4dpg B:222-576 [219908]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgc2: 4dpg C:222-575 [219910]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgd2: 4dpg D:222-575 [219912]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpge2: 4dpg E:222-575 [219914]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgf2: 4dpg F:222-575 [219916]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgg2: 4dpg G:222-575 [219918]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgh2: 4dpg H:222-575 [219920]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domains for 4hwt:
1. Domain d4hwta1: 4hwt A:354-644 [227928]
  Other proteins in same PDB: d4hwta2, d4hwtb2
  automated match to d1qf6a4
  protein/RNA complex; complexed with 1b2, zn
2. Domain d4hwtb1: 4hwt B:354-644 [227933]
  Other proteins in same PDB: d4hwta2, d4hwtb2
  automated match to d1qf6a4
  protein/RNA complex; complexed with 1b2, zn
Domains for 4j15:
1. Domain d4j15a2: 4j15 A:153-495 [223510]
  Other proteins in same PDB: d4j15a1, d4j15b1
  automated match to d1eova2
  protein/RNA complex; complexed with gol
2. Domain d4j15b2: 4j15 B:153-495 [223512]
  Other proteins in same PDB: d4j15a1, d4j15b1
  automated match to d1eova2
  protein/RNA complex; complexed with gol

Plasmodium falciparum [TaxId:36329] [234567] (2 PDB entries)
1. Domains for 4h02:
  1. Domain d4h02a2: 4h02 A:229-581 [234568]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  2. Domain d4h02b2: 4h02 B:229-581 [234569]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  3. Domain d4h02c2: 4h02 C:229-583 [234576]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  4. Domain d4h02d2: 4h02 D:229-581 [234577]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  5. Domain d4h02e2: 4h02 E:229-581 [234578]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  6. Domain d4h02f2: 4h02 F:229-581 [234580]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  7. Domain d4h02g2: 4h02 G:229-581 [234579]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  8. Domain d4h02h2: 4h02 H:229-581 [234581]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
2. Domains for 4pg3:
  1. Domain d4pg3a2: 4pg3 A:230-581 [258137]
    Other proteins in same PDB: d4pg3a1, d4pg3d1
    automated match to d3bjua2
    complexed with krs, lys
  2. Domain d4pg3d2: 4pg3 D:230-581 [258135]
    Other proteins in same PDB: d4pg3a1, d4pg3d1
    automated match to d3bjua2
    complexed with krs, lys
Pyrococcus horikoshii [TaxId:53953] [230395] (3 PDB entries)
1. Domain for 1x54:
  - Domain d1x54a2: 1x54 A:105-434 [230396]
    Other proteins in same PDB: d1x54a1
    automated match to d1b8aa2
    protein/RNA complex; complexed with 4ad, mg, mpd
2. Domain for 1x55:
  - Domain d1x55a2: 1x55 A:105-434 [230398]
    Other proteins in same PDB: d1x55a1
    automated match to d1b8aa2
    protein/RNA complex; complexed with mg, nss, po4
3. Domain for 1x56:
  - Domain d1x56a2: 1x56 A:105-434 [230400]
    Other proteins in same PDB: d1x56a1
    automated match to d1b8aa2
Staphylococcus haemolyticus [TaxId:1283] [225371] (2 PDB entries)
1. Domain for 2rhq:
  - Domain d2rhqa_: 2rhq A: [206133]
    automated match to d1b7ya_
    complexed with gax, zn
2. Domains for 2rhs:
  1. Domain d2rhsa_: 2rhs A: [206134]
    automated match to d1b7ya_
    complexed with gax, so4, zn
  2. Domain d2rhsc_: 2rhs C: [206135]
    automated match to d1b7ya_
    complexed with gax, so4, zn
Sulfolobus tokodaii [TaxId:273063] [230390] (1 PDB entry)
- Domains for 1wyd:
  1. Domain d1wyda2: 1wyd A:101-429 [230391]
    Other proteins in same PDB: d1wyda1, d1wydb1
    automated match to d1b8aa2
    complexed with cl, epe, so4
  2. Domain d1wydb2: 1wyd B:101-429 [230393]
    Other proteins in same PDB: d1wyda1, d1wydb1
    automated match to d1b8aa2
    complexed with cl, epe, so4
Thermococcus kodakarensis [TaxId:311400] [226766] (3 PDB entries)
1. Domains for 3nel:
  1. Domain d3nela2: 3nel A:103-316,A:317-438 [213896]
    Other proteins in same PDB: d3nela1, d3nelb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with asp
  2. Domain d3nelb2: 3nel B:103-316,B:317-438 [213898]
    Other proteins in same PDB: d3nela1, d3nelb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with asp
2. Domains for 3nem:
  1. Domain d3nema2: 3nem A:103-316,A:317-438 [213900]
    Other proteins in same PDB: d3nema1, d3nemb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with amo, atp, mg
  2. Domain d3nemb2: 3nem B:103-316,B:317-438 [213902]
    Other proteins in same PDB: d3nema1, d3nemb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with amo, atp, mg
3. Domains for 3nen:
  1. Domain d3nena2: 3nen A:103-316,A:317-438 [213904]
    Other proteins in same PDB: d3nena1, d3nenb1
    automated match to d1c0aa3
  2. Domain d3nenb2: 3nen B:103-316,B:317-438 [213906]
    Other proteins in same PDB: d3nena1, d3nenb1
    automated match to d1c0aa3

More info for Protein automated matches from d.104.1.0: automated matches

Timeline for Protein automated matches from d.104.1.0: automated matches:

Protein automated matches from d.104.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.104.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.104.1.0: automated matches appears in the current release, SCOPe 2.08