Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1426347Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. 1426348Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) (S)
  5. 1426693Family d.104.1.0: automated matches [227172] (1 protein)
    not a true family
  6. 1426694Protein automated matches [226887] (7 species)
    not a true protein

Species:

  1. 1426695Bacillus stearothermophilus [TaxId:1422] [225707] (2 PDB entries)
    1. Domains for 3e9h:
      1. 1426696Domain d3e9ha2: 3e9h A:146-492 [209426]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      2. 1426697Domain d3e9hb2: 3e9h B:146-492 [209428]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      3. 1426698Domain d3e9hc2: 3e9h C:146-492 [209430]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      4. 1426699Domain d3e9hd2: 3e9h D:146-492 [209432]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
    2. Domains for 3e9i:
      1. 1426700Domain d3e9ia2: 3e9i A:146-492 [209434]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      2. 1426701Domain d3e9ib2: 3e9i B:146-492 [209436]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      3. 1426702Domain d3e9ic2: 3e9i C:146-492 [209438]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      4. 1426703Domain d3e9id2: 3e9i D:146-492 [209440]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
  2. 1426704Human (Homo sapiens) [TaxId:9606] [225403] (4 PDB entries)
    1. Domains for 3bju:
      1. 1426707Domain d3bjua2: 3bju A:222-576 [208648]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      2. 1426708Domain d3bjub2: 3bju B:223-574 [208650]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      3. 1426709Domain d3bjuc2: 3bju C:222-575 [208652]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      4. 1426710Domain d3bjud2: 3bju D:222-575 [208654]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
    2. Domains for 4dpg:
      1. 1426713Domain d4dpga2: 4dpg A:222-575 [219906]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      2. 1426714Domain d4dpgb2: 4dpg B:222-576 [219908]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      3. 1426715Domain d4dpgc2: 4dpg C:222-575 [219910]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      4. 1426716Domain d4dpgd2: 4dpg D:222-575 [219912]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      5. 1426717Domain d4dpge2: 4dpg E:222-575 [219914]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      6. 1426718Domain d4dpgf2: 4dpg F:222-575 [219916]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      7. 1426719Domain d4dpgg2: 4dpg G:222-575 [219918]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      8. 1426720Domain d4dpgh2: 4dpg H:222-575 [219920]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
    3. Domains for 4hwt:
      1. 1426711Domain d4hwta1: 4hwt A:354-644 [227928]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
      2. 1426712Domain d4hwtb1: 4hwt B:354-644 [227933]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
    4. Domains for 4j15:
      1. 1426705Domain d4j15a2: 4j15 A:153-495 [223510]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
      2. 1426706Domain d4j15b2: 4j15 B:153-495 [223512]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
  3. Plasmodium falciparum [TaxId:36329] [234567] (1 PDB entry)
  4. 1426730Pyrococcus horikoshii [TaxId:53953] [230395] (3 PDB entries)
    1. Domain for 1x54:
    2. Domain for 1x55:
    3. Domain for 1x56:
  5. 1426734Staphylococcus haemolyticus [TaxId:1283] [225371] (2 PDB entries)
    1. Domain for 2rhq:
    2. Domains for 2rhs:
      1. 1426736Domain d2rhsa_: 2rhs A: [206134]
        automated match to d1b7ya_
        complexed with gax, so4, zn
      2. 1426737Domain d2rhsc_: 2rhs C: [206135]
        automated match to d1b7ya_
        complexed with gax, so4, zn
  6. 1426738Sulfolobus tokodaii [TaxId:273063] [230390] (1 PDB entry)
  7. 1426741Thermococcus kodakarensis [TaxId:311400] [226766] (3 PDB entries)
    1. Domains for 3nel:
      1. 1426744Domain d3nela2: 3nel A:103-316,A:317-438 [213896]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
      2. 1426745Domain d3nelb2: 3nel B:103-316,B:317-438 [213898]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
    2. Domains for 3nem:
      1. 1426742Domain d3nema2: 3nem A:103-316,A:317-438 [213900]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
      2. 1426743Domain d3nemb2: 3nem B:103-316,B:317-438 [213902]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
    3. Domains for 3nen:
      1. 1426746Domain d3nena2: 3nen A:103-316,A:317-438 [213904]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3
      2. 1426747Domain d3nenb2: 3nen B:103-316,B:317-438 [213906]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3

More info for Protein automated matches from d.104.1.0: automated matches

Timeline for Protein automated matches from d.104.1.0: automated matches: