Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) (S)
  5. Family d.104.1.0: automated matches [227172] (1 protein)
    not a true family
  6. Protein automated matches [226887] (24 species)
    not a true protein

Species:

  1. Acinetobacter baumannii [TaxId:575584] [395412] (1 PDB entry)
  2. Bacillus stearothermophilus [TaxId:1422] [225707] (2 PDB entries)
    1. Domains for 3e9h:
      1. Domain d3e9ha2: 3e9h A:146-492 [209426]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      2. Domain d3e9hb2: 3e9h B:146-492 [209428]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      3. Domain d3e9hc2: 3e9h C:146-492 [209430]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      4. Domain d3e9hd2: 3e9h D:146-492 [209432]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
    2. Domains for 3e9i:
      1. Domain d3e9ia2: 3e9i A:146-492 [209434]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      2. Domain d3e9ib2: 3e9i B:146-492 [209436]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      3. Domain d3e9ic2: 3e9i C:146-492 [209438]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      4. Domain d3e9id2: 3e9i D:146-492 [209440]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
  3. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267892] (3 PDB entries)
    1. Domain for 3ugq:
    2. Domain for 3uh0:
    3. Domains for 4eo4:
      1. Domain d4eo4a1: 4eo4 A:36-340 [266223]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      2. Domain d4eo4b1: 4eo4 B:38-340 [266225]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      3. Domain d4eo4c1: 4eo4 C:36-340 [266227]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      4. Domain d4eo4d1: 4eo4 D:36-340 [266229]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
  4. Chlamydia trachomatis [TaxId:471473] [364686] (3 PDB entries)
    1. Domains for 6nrz:
      1. Domain d6nrza2: 6nrz A:164-520 [365194]
        Other proteins in same PDB: d6nrza1, d6nrzb1
        automated match to d3a74a2
        protein/RNA complex; complexed with adn, cl, edo, lys, na, pg4
      2. Domain d6nrzb2: 6nrz B:164-520 [365203]
        Other proteins in same PDB: d6nrza1, d6nrzb1
        automated match to d3a74a2
        protein/RNA complex; complexed with adn, cl, edo, lys, na, pg4
    2. Domains for 6ns0:
      1. Domain d6ns0a2: 6ns0 A:164-520 [364689]
        Other proteins in same PDB: d6ns0a1, d6ns0b1
        automated match to d3a74a2
        protein/RNA complex; complexed with cl, edo, krs, lys, na, peg, pg4
      2. Domain d6ns0b2: 6ns0 B:164-520 [364687]
        Other proteins in same PDB: d6ns0a1, d6ns0b1
        automated match to d3a74a2
        protein/RNA complex; complexed with cl, edo, krs, lys, na, peg, pg4
    3. Domains for 6o3f:
      1. Domain d6o3fa2: 6o3f A:164-520 [366966]
        Other proteins in same PDB: d6o3fa1, d6o3fb1
        automated match to d3a74a2
        protein/RNA complex; complexed with edo, fyb, lys, peg, pg4, so4
      2. Domain d6o3fb2: 6o3f B:164-521 [366942]
        Other proteins in same PDB: d6o3fa1, d6o3fb1
        automated match to d3a74a2
        protein/RNA complex; complexed with edo, fyb, lys, peg, pg4, so4
  5. Cryptosporidium parvum [TaxId:353152] [326196] (5 PDB entries)
    1. Domains for 5eln:
      1. Domain d5elna2: 5eln A:194-545 [326244]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
      2. Domain d5elnb2: 5eln B:194-545 [326373]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
      3. Domain d5elnc2: 5eln C:194-545 [326197]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
      4. Domain d5elnd2: 5eln D:195-545 [326358]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
    2. Domains for 5elo:
      1. Domain d5eloa2: 5elo A:194-545 [326203]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
      2. Domain d5elob2: 5elo B:194-545 [326349]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
      3. Domain d5eloc2: 5elo C:194-544 [326286]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
      4. Domain d5elod2: 5elo D:194-545 [326363]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
    3. Domains for 6bni:
      1. Domain d6bnia2: 6bni A:194-545 [349853]
        Other proteins in same PDB: d6bnia1, d6bnia3, d6bnib1, d6bnib3
        automated match to d5elna2
        protein/RNA complex; complexed with adn, edo, lys, na, so4
      2. Domain d6bnib2: 6bni B:194-546 [349705]
        Other proteins in same PDB: d6bnia1, d6bnia3, d6bnib1, d6bnib3
        automated match to d5elna2
        protein/RNA complex; complexed with adn, edo, lys, na, so4
    4. Domains for 6c86:
      1. Domain d6c86a2: 6c86 A:194-545 [350128]
        Other proteins in same PDB: d6c86a1, d6c86a3, d6c86b1, d6c86b3
        automated match to d5elna2
        protein/RNA complex; complexed with cl, edo, kaa, na, so4
      2. Domain d6c86b2: 6c86 B:194-545 [350168]
        Other proteins in same PDB: d6c86a1, d6c86a3, d6c86b1, d6c86b3
        automated match to d5elna2
        protein/RNA complex; complexed with cl, edo, kaa, na, so4
    5. Domains for 6hcw:
      1. Domain d6hcwa2: 6hcw A:194-545 [367109]
        Other proteins in same PDB: d6hcwa1, d6hcwa3, d6hcwb1, d6hcwb3
        automated match to d5elna2
        protein/RNA complex; complexed with fyb, lys, trs
      2. Domain d6hcwb2: 6hcw B:195-545 [367093]
        Other proteins in same PDB: d6hcwa1, d6hcwa3, d6hcwb1, d6hcwb3
        automated match to d5elna2
        protein/RNA complex; complexed with fyb, lys, trs
  6. Enterococcus faecalis [TaxId:226185] [330979] (5 PDB entries)
    1. Domain for 5iby:
    2. Domains for 5ich:
      1. Domain d5icha1: 5ich A:1-247 [330980]
        Other proteins in same PDB: d5icha2, d5icha3, d5ichb2, d5ichb3
        automated match to d1vqza2
        complexed with sh5
      2. Domain d5ichb1: 5ich B:1-247 [331404]
        Other proteins in same PDB: d5icha2, d5icha3, d5ichb2, d5ichb3
        automated match to d1vqza2
        complexed with sh5
    3. Domains for 5icl:
      1. Domain d5icla1: 5icl A:1-247 [331053]
        Other proteins in same PDB: d5icla2, d5icla3, d5iclb2, d5iclb3
        automated match to d1vqza2
        complexed with laq
      2. Domain d5iclb1: 5icl B:1-247 [331248]
        Other proteins in same PDB: d5icla2, d5icla3, d5iclb2, d5iclb3
        automated match to d1vqza2
        complexed with laq
    4. Domain for 5idh:
    5. Domain for 5ij6:
  7. Escherichia coli [TaxId:511145] [395398] (2 PDB entries)
    1. Domains for 6oz5:
      1. Domain d6oz5a_: 6oz5 A: [395481]
        Other proteins in same PDB: d6oz5c1
        automated match to d1jjca_
        protein/RNA complex; complexed with edo, mg, peg, pge, vb3
      2. Domain d6oz5c2: 6oz5 C:91-327 [395399]
        Other proteins in same PDB: d6oz5c1
        automated match to d3pcoc2
        protein/RNA complex; complexed with edo, mg, peg, pge, vb3
    2. Domains for 6p26:
      1. Domain d6p26a_: 6p26 A: [395414]
        Other proteins in same PDB: d6p26c1
        automated match to d1jjca_
        protein/RNA complex; complexed with no4
      2. Domain d6p26c2: 6p26 C:91-327 [395431]
        Other proteins in same PDB: d6p26c1
        automated match to d3pcoc2
        protein/RNA complex; complexed with no4
  8. Escherichia coli [TaxId:562] [256019] (1 PDB entry)
  9. Escherichia coli [TaxId:83333] [395390] (1 PDB entry)
  10. Human (Homo sapiens) [TaxId:9606] [225403] (12 PDB entries)
    1. Domains for 3bju:
      1. Domain d3bjua2: 3bju A:222-576 [208648]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      2. Domain d3bjub2: 3bju B:223-574 [208650]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      3. Domain d3bjuc2: 3bju C:222-575 [208652]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      4. Domain d3bjud2: 3bju D:222-575 [208654]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
    2. Domains for 4dpg:
      1. Domain d4dpga2: 4dpg A:222-575 [219906]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      2. Domain d4dpgb2: 4dpg B:222-576 [219908]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      3. Domain d4dpgc2: 4dpg C:222-575 [219910]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      4. Domain d4dpgd2: 4dpg D:222-575 [219912]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      5. Domain d4dpge2: 4dpg E:222-575 [219914]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      6. Domain d4dpgf2: 4dpg F:222-575 [219916]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      7. Domain d4dpgg2: 4dpg G:222-575 [219918]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      8. Domain d4dpgh2: 4dpg H:222-575 [219920]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
    3. Domains for 4hwt:
      1. Domain d4hwta1: 4hwt A:354-644 [227928]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
      2. Domain d4hwtb1: 4hwt B:354-644 [227933]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
    4. Domains for 4j15:
      1. Domain d4j15a2: 4j15 A:153-495 [223510]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
      2. Domain d4j15b2: 4j15 B:153-495 [223512]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
    5. Domains for 4p3n:
      1. Domain d4p3na1: 4p3n A:322-611 [269745]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      2. Domain d4p3nb1: 4p3n B:322-611 [269739]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      3. Domain d4p3nc1: 4p3n C:322-611 [269741]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      4. Domain d4p3nd1: 4p3n D:322-611 [269743]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
    6. Domains for 4ttv:
      1. Domain d4ttva1: 4ttv A:322-611 [277576]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      2. Domain d4ttvb1: 4ttv B:322-611 [277574]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      3. Domain d4ttvc1: 4ttv C:322-611 [277579]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      4. Domain d4ttvd1: 4ttv D:322-611 [277581]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
    7. Domains for 4ycu:
      1. Domain d4ycua2: 4ycu A:222-576 [273829]
        Other proteins in same PDB: d4ycua1, d4ycub1
        automated match to d3bjua2
        protein/RNA complex; complexed with gol, krs, lys
      2. Domain d4ycub2: 4ycu B:222-575 [273831]
        Other proteins in same PDB: d4ycua1, d4ycub1
        automated match to d3bjua2
        protein/RNA complex; complexed with gol, krs, lys
    8. Domains for 4ycw:
      1. Domain d4ycwa2: 4ycw A:222-575 [273823]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      2. Domain d4ycwb2: 4ycw B:222-575 [273825]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      3. Domain d4ycwe2: 4ycw E:222-575 [273827]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      4. Domain d4ycwf2: 4ycw F:222-575 [273821]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
    9. Domains for 6chd:
      1. Domain d6chda2: 6chd A:222-576 [350117]
        Other proteins in same PDB: d6chda1, d6chdb1
        automated match to d3bjua2
        protein/RNA complex; complexed with edo, gol, kaa, so4
      2. Domain d6chdb2: 6chd B:222-576 [350134]
        Other proteins in same PDB: d6chda1, d6chdb1
        automated match to d3bjua2
        protein/RNA complex; complexed with edo, gol, kaa, so4
    10. Domains for 6ild:
      1. Domain d6ilda2: 6ild A:222-576 [365399]
        Other proteins in same PDB: d6ilda1, d6ildb1
        automated match to d3bjua2
        protein/RNA complex; complexed with 45a, gol, lys, mg
      2. Domain d6ildb2: 6ild B:222-575 [365449]
        Other proteins in same PDB: d6ilda1, d6ildb1
        automated match to d3bjua2
        protein/RNA complex; complexed with 45a, gol, lys, mg
    11. Domains for 6ilh:
      1. Domain d6ilha2: 6ilh A:222-575 [365357]
        Other proteins in same PDB: d6ilha1, d6ilhb1
        automated match to d3bjua2
        complexed with kaa; mutant
      2. Domain d6ilhb2: 6ilh B:222-575 [365354]
        Other proteins in same PDB: d6ilha1, d6ilhb1
        automated match to d3bjua2
        complexed with kaa; mutant
    12. Domains for 7ea9:
      1. Domain d7ea9a2: 7ea9 A:222-575 [401989]
        Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
        automated match to d3bjua2
        complexed with gol, kaa; mutant
      2. Domain d7ea9b2: 7ea9 B:222-575 [401996]
        Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
        automated match to d3bjua2
        complexed with gol, kaa; mutant
      3. Domain d7ea9c2: 7ea9 C:222-575 [401983]
        Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
        automated match to d3bjua2
        complexed with gol, kaa; mutant
      4. Domain d7ea9d2: 7ea9 D:222-575 [402045]
        Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
        automated match to d3bjua2
        complexed with gol, kaa; mutant
  11. Mycobacterium thermoresistibile [TaxId:1078020] [338442] (1 PDB entry)
  12. Mycobacterium tuberculosis [TaxId:83332] [398845] (3 PDB entries)
    1. Domain for 7daw:
    2. Domain for 7db7:
    3. Domain for 7db8:
  13. Mycobacterium ulcerans [TaxId:362242] [334394] (2 PDB entries)
    1. Domains for 5vl1:
      1. Domain d5vl1a2: 5vl1 A:154-494 [334676]
        Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
        automated match to d3bjua2
        protein/RNA complex; complexed with lys, peg, pge
      2. Domain d5vl1b2: 5vl1 B:151-494 [334395]
        Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
        automated match to d3bjua2
        protein/RNA complex; complexed with lys, peg, pge
      3. Domain d5vl1c2: 5vl1 C:154-494 [334496]
        Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
        automated match to d3bjua2
        protein/RNA complex; complexed with lys, peg, pge
      4. Domain d5vl1d2: 5vl1 D:151-494 [334402]
        Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
        automated match to d3bjua2
        protein/RNA complex; complexed with lys, peg, pge
    2. Domains for 6aqg:
      1. Domain d6aqga2: 6aqg A:154-495 [338468]
        Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys, mpd
      2. Domain d6aqgb2: 6aqg B:154-495 [338471]
        Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys, mpd
      3. Domain d6aqgc2: 6aqg C:154-496 [338449]
        Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys, mpd
      4. Domain d6aqgd2: 6aqg D:152-496 [338484]
        Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys, mpd
  14. Onchocerca volvulus [TaxId:6282] [359086] (1 PDB entry)
  15. Phytophthora sojae [TaxId:67593] [371711] (1 PDB entry)
  16. Plasmodium falciparum [TaxId:36329] [234567] (7 PDB entries)
    1. Domains for 4h02:
      1. Domain d4h02a2: 4h02 A:229-581 [234568]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      2. Domain d4h02b2: 4h02 B:229-581 [234569]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      3. Domain d4h02c2: 4h02 C:229-583 [234576]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      4. Domain d4h02d2: 4h02 D:229-581 [234577]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      5. Domain d4h02e2: 4h02 E:229-581 [234578]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      6. Domain d4h02f2: 4h02 F:229-581 [234580]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      7. Domain d4h02g2: 4h02 G:229-581 [234579]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      8. Domain d4h02h2: 4h02 H:229-581 [234581]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
    2. Domains for 4pg3:
      1. Domain d4pg3a2: 4pg3 A:230-581 [258137]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      2. Domain d4pg3b2: 4pg3 B:229-581 [263477]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      3. Domain d4pg3c2: 4pg3 C:229-581 [263479]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      4. Domain d4pg3d2: 4pg3 D:230-581 [258135]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
    3. Domains for 6hcu:
      1. Domain d6hcua2: 6hcu A:229-582 [367126]
        Other proteins in same PDB: d6hcua1, d6hcub1
        automated match to d3bjua2
        complexed with fyb, his, lys, peg, trs
      2. Domain d6hcub2: 6hcu B:229-582 [367121]
        Other proteins in same PDB: d6hcua1, d6hcub1
        automated match to d3bjua2
        complexed with fyb, his, lys, peg, trs
    4. Domains for 6hcv:
      1. Domain d6hcva2: 6hcv A:230-582 [367115]
        Other proteins in same PDB: d6hcva1, d6hcvb1
        automated match to d4h02a2
        protein/RNA complex; complexed with fye
      2. Domain d6hcvb2: 6hcv B:230-582 [367195]
        Other proteins in same PDB: d6hcva1, d6hcvb1
        automated match to d4h02a2
        protein/RNA complex; complexed with fye
    5. Domains for 6l3y:
      1. Domain d6l3ya2: 6l3y A:230-581 [405458]
        Other proteins in same PDB: d6l3ya1, d6l3yb1
        automated match to d3bjua2
        protein/RNA complex; complexed with e5c, lys, po4
      2. Domain d6l3yb2: 6l3y B:230-581 [405449]
        Other proteins in same PDB: d6l3ya1, d6l3yb1
        automated match to d3bjua2
        protein/RNA complex; complexed with e5c, lys, po4
    6. Domains for 6l4q:
      1. Domain d6l4qa2: 6l4q A:229-581 [405441]
        Other proteins in same PDB: d6l4qa1, d6l4qb1
        automated match to d3bjua2
        protein/RNA complex; complexed with e5r, lys
      2. Domain d6l4qb2: 6l4q B:229-581 [405443]
        Other proteins in same PDB: d6l4qa1, d6l4qb1
        automated match to d3bjua2
        protein/RNA complex; complexed with e5r, lys
    7. Domains for 6m0t:
      1. Domain d6m0ta2: 6m0t A:229-581 [403622]
        Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
        automated match to d3bjua2
        protein/RNA complex; complexed with ez3, lys
      2. Domain d6m0tb2: 6m0t B:229-581 [403638]
        Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
        automated match to d3bjua2
        protein/RNA complex; complexed with ez3, lys
      3. Domain d6m0tc2: 6m0t C:229-581 [403724]
        Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
        automated match to d3bjua2
        protein/RNA complex; complexed with ez3, lys
      4. Domain d6m0td2: 6m0t D:229-581 [403658]
        Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
        automated match to d3bjua2
        protein/RNA complex; complexed with ez3, lys
  17. Malaria parasite (Plasmodium falciparum) [TaxId:5833] [389675] (1 PDB entry)
  18. Plasmodium falciparum [TaxId:5843] [354075] (9 PDB entries)
    1. Domains for 5zh2:
      1. Domain d5zh2a2: 5zh2 A:230-581 [354165]
        Other proteins in same PDB: d5zh2a1, d5zh2b1
        automated match to d3bjua2
        complexed with 9cu, cl, lys, mpo
      2. Domain d5zh2b2: 5zh2 B:230-581 [354153]
        Other proteins in same PDB: d5zh2a1, d5zh2b1
        automated match to d3bjua2
        complexed with 9cu, cl, lys, mpo
    2. Domains for 5zh3:
      1. Domain d5zh3a2: 5zh3 A:230-581 [354101]
        Other proteins in same PDB: d5zh3a1, d5zh3b1
        automated match to d3bjua2
        complexed with 9cf, lys
      2. Domain d5zh3b2: 5zh3 B:230-581 [354084]
        Other proteins in same PDB: d5zh3a1, d5zh3b1
        automated match to d3bjua2
        complexed with 9cf, lys
    3. Domains for 5zh4:
      1. Domain d5zh4a2: 5zh4 A:230-581 [354094]
        Other proteins in same PDB: d5zh4a1, d5zh4b1
        automated match to d3bjua2
        complexed with 9cc, cl, lys
      2. Domain d5zh4b2: 5zh4 B:231-581 [354076]
        Other proteins in same PDB: d5zh4a1, d5zh4b1
        automated match to d3bjua2
        complexed with 9cc, cl, lys
    4. Domains for 5zh5:
      1. Domain d5zh5a2: 5zh5 A:230-581 [354099]
        Other proteins in same PDB: d5zh5a1, d5zh5b1
        automated match to d3bjua2
        complexed with 9cx, cl, lys
      2. Domain d5zh5b2: 5zh5 B:230-581 [354150]
        Other proteins in same PDB: d5zh5a1, d5zh5b1
        automated match to d3bjua2
        complexed with 9cx, cl, lys
    5. Domains for 6agt:
      1. Domain d6agta2: 6agt A:230-582 [365725]
        Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
        automated match to d3bjua2
        complexed with 9x0, co, fmt, lys, mla
      2. Domain d6agtb2: 6agt B:229-583 [365731]
        Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
        automated match to d3bjua2
        complexed with 9x0, co, fmt, lys, mla
      3. Domain d6agtc2: 6agt C:230-583 [365794]
        Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
        automated match to d3bjua2
        complexed with 9x0, co, fmt, lys, mla
      4. Domain d6agtd2: 6agt D:231-581 [365724]
        Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
        automated match to d3bjua2
        complexed with 9x0, co, fmt, lys, mla
    6. Domains for 6ka6:
      1. Domain d6ka6a2: 6ka6 A:229-582 [383343]
        Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4o, gol, lys
      2. Domain d6ka6b2: 6ka6 B:229-582 [383307]
        Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4o, gol, lys
      3. Domain d6ka6c2: 6ka6 C:229-582 [383541]
        Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4o, gol, lys
      4. Domain d6ka6d2: 6ka6 D:229-581 [383383]
        Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4o, gol, lys
    7. Domains for 6kab:
      1. Domain d6kaba2: 6kab A:229-583 [383348]
        Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4u, lys
      2. Domain d6kabb2: 6kab B:229-582 [383569]
        Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4u, lys
      3. Domain d6kabc2: 6kab C:229-582 [383376]
        Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4u, lys
      4. Domain d6kabd2: 6kab D:230-582 [383419]
        Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4u, lys
    8. Domains for 6kbf:
      1. Domain d6kbfa2: 6kbf A:229-582 [383374]
        Other proteins in same PDB: d6kbfa1, d6kbfb1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4x, dms, gol, lys
      2. Domain d6kbfb2: 6kbf B:229-581 [383309]
        Other proteins in same PDB: d6kbfa1, d6kbfb1
        automated match to d3bjua2
        protein/RNA complex; complexed with d4x, dms, gol, lys
    9. Domains for 6kcn:
      1. Domain d6kcna2: 6kcn A:229-582 [383498]
        Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d5f, gol, lys
      2. Domain d6kcnb2: 6kcn B:229-582 [383341]
        Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d5f, gol, lys
      3. Domain d6kcnc2: 6kcn C:230-582 [383452]
        Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d5f, gol, lys
      4. Domain d6kcnd2: 6kcn D:229-582 [383318]
        Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
        automated match to d3bjua2
        protein/RNA complex; complexed with d5f, gol, lys
  19. Pyrococcus horikoshii [TaxId:53953] [230395] (3 PDB entries)
    1. Domain for 1x54:
    2. Domain for 1x55:
    3. Domain for 1x56:
  20. Staphylococcus haemolyticus [TaxId:1283] [225371] (2 PDB entries)
    1. Domain for 2rhq:
    2. Domains for 2rhs:
      1. Domain d2rhsa_: 2rhs A: [206134]
        Other proteins in same PDB: d2rhsc2
        automated match to d1b7ya_
        complexed with gax, so4, zn
      2. Domain d2rhsc1: 2rhs C:84-351 [206135]
        Other proteins in same PDB: d2rhsc2
        automated match to d1b7ya_
        complexed with gax, so4, zn
  21. Stenotrophomonas maltophilia [TaxId:522373] [383534] (1 PDB entry)
  22. Sulfolobus tokodaii [TaxId:273063] [230390] (1 PDB entry)
  23. Thermococcus kodakarensis [TaxId:311400] [226766] (3 PDB entries)
    1. Domains for 3nel:
      1. Domain d3nela2: 3nel A:103-316,A:317-438 [213896]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
      2. Domain d3nelb2: 3nel B:103-316,B:317-438 [213898]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
    2. Domains for 3nem:
      1. Domain d3nema2: 3nem A:103-316,A:317-438 [213900]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
      2. Domain d3nemb2: 3nem B:103-316,B:317-438 [213902]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
    3. Domains for 3nen:
      1. Domain d3nena2: 3nen A:103-316,A:317-438 [213904]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3
      2. Domain d3nenb2: 3nen B:103-316,B:317-438 [213906]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3
  24. Thermus thermophilus [TaxId:274] [366306] (1 PDB entry)

More info for Protein automated matches from d.104.1.0: automated matches

Timeline for Protein automated matches from d.104.1.0: automated matches: