SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
contains large mixed beta-sheet
Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families)
Family d.104.1.0: automated matches [227172] (1 protein)
not a true family
Protein automated matches [226887] (24 species)
not a true protein

Species:

Acinetobacter baumannii [TaxId:575584] [395412] (1 PDB entry)
- Domain for 6p8t:
  - Domain d6p8td_: 6p8t D: [395413]
    automated match to d3pcoa_
    protein/RNA complex; complexed with mg, no4
Bacillus stearothermophilus [TaxId:1422] [225707] (2 PDB entries)
1. Domains for 3e9h:
  1. Domain d3e9ha2: 3e9h A:146-492 [209426]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
  2. Domain d3e9hb2: 3e9h B:146-492 [209428]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
  3. Domain d3e9hc2: 3e9h C:146-492 [209430]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
  4. Domain d3e9hd2: 3e9h D:146-492 [209432]
    Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
    automated match to d1bbua2
    protein/RNA complex; complexed with kaa, mg
2. Domains for 3e9i:
  1. Domain d3e9ia2: 3e9i A:146-492 [209434]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
  2. Domain d3e9ib2: 3e9i B:146-492 [209436]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
  3. Domain d3e9ic2: 3e9i C:146-492 [209438]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
  4. Domain d3e9id2: 3e9i D:146-492 [209440]
    Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
    automated match to d1bbua2
    protein/RNA complex; complexed with 1pe, mg, xah
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267892] (3 PDB entries)
1. Domain for 3ugq:
  - Domain d3ugqa1: 3ugq A:33-340 [265514]
    Other proteins in same PDB: d3ugqa2
    automated match to d4hwta1
    complexed with k, so4, zn
2. Domain for 3uh0:
  - Domain d3uh0a1: 3uh0 A:32-340 [265516]
    Other proteins in same PDB: d3uh0a2
    automated match to d4hwta1
    protein/RNA complex; complexed with so4, tsb, zn
3. Domains for 4eo4:
  1. Domain d4eo4a1: 4eo4 A:36-340 [266223]
    Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
    automated match to d4hwta1
    protein/RNA complex; complexed with ssa, zn
  2. Domain d4eo4b1: 4eo4 B:38-340 [266225]
    Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
    automated match to d4hwta1
    protein/RNA complex; complexed with ssa, zn
  3. Domain d4eo4c1: 4eo4 C:36-340 [266227]
    Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
    automated match to d4hwta1
    protein/RNA complex; complexed with ssa, zn
  4. Domain d4eo4d1: 4eo4 D:36-340 [266229]
    Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
    automated match to d4hwta1
    protein/RNA complex; complexed with ssa, zn
Chlamydia trachomatis [TaxId:471473] [364686] (3 PDB entries)
1. Domains for 6nrz:
  1. Domain d6nrza2: 6nrz A:164-520 [365194]
    Other proteins in same PDB: d6nrza1, d6nrzb1
    automated match to d3a74a2
    protein/RNA complex; complexed with adn, cl, edo, lys, na, pg4
  2. Domain d6nrzb2: 6nrz B:164-520 [365203]
    Other proteins in same PDB: d6nrza1, d6nrzb1
    automated match to d3a74a2
    protein/RNA complex; complexed with adn, cl, edo, lys, na, pg4
2. Domains for 6ns0:
  1. Domain d6ns0a2: 6ns0 A:164-520 [364689]
    Other proteins in same PDB: d6ns0a1, d6ns0b1
    automated match to d3a74a2
    protein/RNA complex; complexed with cl, edo, krs, lys, na, peg, pg4
  2. Domain d6ns0b2: 6ns0 B:164-520 [364687]
    Other proteins in same PDB: d6ns0a1, d6ns0b1
    automated match to d3a74a2
    protein/RNA complex; complexed with cl, edo, krs, lys, na, peg, pg4
3. Domains for 6o3f:
  1. Domain d6o3fa2: 6o3f A:164-520 [366966]
    Other proteins in same PDB: d6o3fa1, d6o3fb1
    automated match to d3a74a2
    protein/RNA complex; complexed with edo, fyb, lys, peg, pg4, so4
  2. Domain d6o3fb2: 6o3f B:164-521 [366942]
    Other proteins in same PDB: d6o3fa1, d6o3fb1
    automated match to d3a74a2
    protein/RNA complex; complexed with edo, fyb, lys, peg, pg4, so4

Cryptosporidium parvum [TaxId:353152] [326196] (5 PDB entries)

Domains for 5eln:

Domain d5elna2: 5eln A:194-545 [326244]
Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, gol, lys

Domain d5elnb2: 5eln B:194-545 [326373]
Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, gol, lys

Domain d5elnc2: 5eln C:194-545 [326197]
Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, gol, lys

Domain d5elnd2: 5eln D:195-545 [326358]
Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, gol, lys

Domains for 5elo:

Domain d5eloa2: 5elo A:194-545 [326203]
Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, krs, lys, so4

Domain d5elob2: 5elo B:194-545 [326349]
Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, krs, lys, so4

Domain d5eloc2: 5elo C:194-544 [326286]
Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, krs, lys, so4

Domain d5elod2: 5elo D:194-545 [326363]
Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
automated match to d3bjuc2
protein/RNA complex; complexed with edo, krs, lys, so4

Domains for 6bni:
1. Domain d6bnia2: 6bni A:194-545 [349853]
  Other proteins in same PDB: d6bnia1, d6bnia3, d6bnib1, d6bnib3
  automated match to d5elna2
  protein/RNA complex; complexed with adn, edo, lys, na, so4
2. Domain d6bnib2: 6bni B:194-546 [349705]
  Other proteins in same PDB: d6bnia1, d6bnia3, d6bnib1, d6bnib3
  automated match to d5elna2
  protein/RNA complex; complexed with adn, edo, lys, na, so4
Domains for 6c86:
1. Domain d6c86a2: 6c86 A:194-545 [350128]
  Other proteins in same PDB: d6c86a1, d6c86a3, d6c86b1, d6c86b3
  automated match to d5elna2
  protein/RNA complex; complexed with cl, edo, kaa, na, so4
2. Domain d6c86b2: 6c86 B:194-545 [350168]
  Other proteins in same PDB: d6c86a1, d6c86a3, d6c86b1, d6c86b3
  automated match to d5elna2
  protein/RNA complex; complexed with cl, edo, kaa, na, so4
Domains for 6hcw:
1. Domain d6hcwa2: 6hcw A:194-545 [367109]
  Other proteins in same PDB: d6hcwa1, d6hcwa3, d6hcwb1, d6hcwb3
  automated match to d5elna2
  protein/RNA complex; complexed with fyb, lys, trs
2. Domain d6hcwb2: 6hcw B:195-545 [367093]
  Other proteins in same PDB: d6hcwa1, d6hcwa3, d6hcwb1, d6hcwb3
  automated match to d5elna2
  protein/RNA complex; complexed with fyb, lys, trs

Enterococcus faecalis [TaxId:226185] [330979] (5 PDB entries)
1. Domain for 5iby:
  - Domain d5ibya1: 5iby A:1-247 [331023]
    Other proteins in same PDB: d5ibya2, d5ibya3
    automated match to d1vqza2
    complexed with lpa
2. Domains for 5ich:
  1. Domain d5icha1: 5ich A:1-247 [330980]
    Other proteins in same PDB: d5icha2, d5icha3, d5ichb2, d5ichb3
    automated match to d1vqza2
    complexed with sh5
  2. Domain d5ichb1: 5ich B:1-247 [331404]
    Other proteins in same PDB: d5icha2, d5icha3, d5ichb2, d5ichb3
    automated match to d1vqza2
    complexed with sh5
3. Domains for 5icl:
  1. Domain d5icla1: 5icl A:1-247 [331053]
    Other proteins in same PDB: d5icla2, d5icla3, d5iclb2, d5iclb3
    automated match to d1vqza2
    complexed with laq
  2. Domain d5iclb1: 5icl B:1-247 [331248]
    Other proteins in same PDB: d5icla2, d5icla3, d5iclb2, d5iclb3
    automated match to d1vqza2
    complexed with laq
4. Domain for 5idh:
  - Domain d5idha1: 5idh A:1-247 [331195]
    Other proteins in same PDB: d5idha2, d5idha3
    automated match to d1vqza2
    complexed with sh6
5. Domain for 5ij6:
  - Domain d5ij6a1: 5ij6 A:1-249 [331068]
    Other proteins in same PDB: d5ij6a2, d5ij6a3
    automated match to d1vqza2
    complexed with cl, lpa, so4
Escherichia coli [TaxId:511145] [395398] (2 PDB entries)
1. Domains for 6oz5:
  1. Domain d6oz5a_: 6oz5 A: [395481]
    Other proteins in same PDB: d6oz5c1
    automated match to d1jjca_
    protein/RNA complex; complexed with edo, mg, peg, pge, vb3
  2. Domain d6oz5c2: 6oz5 C:91-327 [395399]
    Other proteins in same PDB: d6oz5c1
    automated match to d3pcoc2
    protein/RNA complex; complexed with edo, mg, peg, pge, vb3
2. Domains for 6p26:
  1. Domain d6p26a_: 6p26 A: [395414]
    Other proteins in same PDB: d6p26c1
    automated match to d1jjca_
    protein/RNA complex; complexed with no4
  2. Domain d6p26c2: 6p26 C:91-327 [395431]
    Other proteins in same PDB: d6p26c1
    automated match to d3pcoc2
    protein/RNA complex; complexed with no4
Escherichia coli [TaxId:562] [256019] (1 PDB entry)
- Domains for 3pco:
  1. Domain d3pcoa_: 3pco A: [248462]
    Other proteins in same PDB: d3pcoc1
    automated match to d1jjca_
    protein/DNA complex; protein/RNA complex; complexed with amp, phe
  2. Domain d3pcoc2: 3pco C:91-327 [248464]
    Other proteins in same PDB: d3pcoc1
    automated match to d1jjca_
    protein/DNA complex; protein/RNA complex; complexed with amp, phe
Escherichia coli [TaxId:83333] [395390] (1 PDB entry)
- Domains for 6p24:
  1. Domain d6p24a_: 6p24 A: [395391]
    Other proteins in same PDB: d6p24c1
    automated match to d1jjca_
    complexed with cl, edo, hez, mg, peg, pge, trs
  2. Domain d6p24c2: 6p24 C:91-327 [395417]
    Other proteins in same PDB: d6p24c1
    automated match to d3pcoc2
    complexed with cl, edo, hez, mg, peg, pge, trs

Human (Homo sapiens) [TaxId:9606] [225403] (12 PDB entries)

Domains for 3bju:
1. Domain d3bjua2: 3bju A:222-576 [208648]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys
2. Domain d3bjub2: 3bju B:223-574 [208650]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys
3. Domain d3bjuc2: 3bju C:222-575 [208652]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys
4. Domain d3bjud2: 3bju D:222-575 [208654]
  Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
  automated match to d1bbua2
  complexed with atp, ca, lys

Domains for 4dpg:

Domain d4dpga2: 4dpg A:222-575 [219906]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgb2: 4dpg B:222-576 [219908]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgc2: 4dpg C:222-575 [219910]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgd2: 4dpg D:222-575 [219912]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpge2: 4dpg E:222-575 [219914]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgf2: 4dpg F:222-575 [219916]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgg2: 4dpg G:222-575 [219918]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domain d4dpgh2: 4dpg H:222-575 [219920]
Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
automated match to d1bbua2
protein/RNA complex; complexed with ala, apc, lys, mg

Domains for 4hwt:
1. Domain d4hwta1: 4hwt A:354-644 [227928]
  Other proteins in same PDB: d4hwta2, d4hwtb2
  automated match to d1qf6a4
  protein/RNA complex; complexed with 1b2, zn
2. Domain d4hwtb1: 4hwt B:354-644 [227933]
  Other proteins in same PDB: d4hwta2, d4hwtb2
  automated match to d1qf6a4
  protein/RNA complex; complexed with 1b2, zn
Domains for 4j15:
1. Domain d4j15a2: 4j15 A:153-495 [223510]
  Other proteins in same PDB: d4j15a1, d4j15b1
  automated match to d1eova2
  protein/RNA complex; complexed with gol
2. Domain d4j15b2: 4j15 B:153-495 [223512]
  Other proteins in same PDB: d4j15a1, d4j15b1
  automated match to d1eova2
  protein/RNA complex; complexed with gol
Domains for 4p3n:
1. Domain d4p3na1: 4p3n A:322-611 [269745]
  Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
  automated match to d4hwra1
  protein/RNA complex; complexed with 2cr, zn
2. Domain d4p3nb1: 4p3n B:322-611 [269739]
  Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
  automated match to d4hwra1
  protein/RNA complex; complexed with 2cr, zn
3. Domain d4p3nc1: 4p3n C:322-611 [269741]
  Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
  automated match to d4hwra1
  protein/RNA complex; complexed with 2cr, zn
4. Domain d4p3nd1: 4p3n D:322-611 [269743]
  Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
  automated match to d4hwra1
  protein/RNA complex; complexed with 2cr, zn

Domains for 4ttv:

Domain d4ttva1: 4ttv A:322-611 [277576]
Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
automated match to d4hwra1
protein/RNA complex; complexed with bc9, zn

Domain d4ttvb1: 4ttv B:322-611 [277574]
Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
automated match to d4hwra1
protein/RNA complex; complexed with bc9, zn

Domain d4ttvc1: 4ttv C:322-611 [277579]
Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
automated match to d4hwra1
protein/RNA complex; complexed with bc9, zn

Domain d4ttvd1: 4ttv D:322-611 [277581]
Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
automated match to d4hwra1
protein/RNA complex; complexed with bc9, zn

Domains for 4ycu:
1. Domain d4ycua2: 4ycu A:222-576 [273829]
  Other proteins in same PDB: d4ycua1, d4ycub1
  automated match to d3bjua2
  protein/RNA complex; complexed with gol, krs, lys
2. Domain d4ycub2: 4ycu B:222-575 [273831]
  Other proteins in same PDB: d4ycua1, d4ycub1
  automated match to d3bjua2
  protein/RNA complex; complexed with gol, krs, lys
Domains for 4ycw:
1. Domain d4ycwa2: 4ycw A:222-575 [273823]
  Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
  automated match to d3bjua2
  protein/RNA complex; complexed with krs, lys; mutant
2. Domain d4ycwb2: 4ycw B:222-575 [273825]
  Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
  automated match to d3bjua2
  protein/RNA complex; complexed with krs, lys; mutant
3. Domain d4ycwe2: 4ycw E:222-575 [273827]
  Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
  automated match to d3bjua2
  protein/RNA complex; complexed with krs, lys; mutant
4. Domain d4ycwf2: 4ycw F:222-575 [273821]
  Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
  automated match to d3bjua2
  protein/RNA complex; complexed with krs, lys; mutant
Domains for 6chd:
1. Domain d6chda2: 6chd A:222-576 [350117]
  Other proteins in same PDB: d6chda1, d6chdb1
  automated match to d3bjua2
  protein/RNA complex; complexed with edo, gol, kaa, so4
2. Domain d6chdb2: 6chd B:222-576 [350134]
  Other proteins in same PDB: d6chda1, d6chdb1
  automated match to d3bjua2
  protein/RNA complex; complexed with edo, gol, kaa, so4
Domains for 6ild:
1. Domain d6ilda2: 6ild A:222-576 [365399]
  Other proteins in same PDB: d6ilda1, d6ildb1
  automated match to d3bjua2
  protein/RNA complex; complexed with 45a, gol, lys, mg
2. Domain d6ildb2: 6ild B:222-575 [365449]
  Other proteins in same PDB: d6ilda1, d6ildb1
  automated match to d3bjua2
  protein/RNA complex; complexed with 45a, gol, lys, mg
Domains for 6ilh:
1. Domain d6ilha2: 6ilh A:222-575 [365357]
  Other proteins in same PDB: d6ilha1, d6ilhb1
  automated match to d3bjua2
  complexed with kaa; mutant
2. Domain d6ilhb2: 6ilh B:222-575 [365354]
  Other proteins in same PDB: d6ilha1, d6ilhb1
  automated match to d3bjua2
  complexed with kaa; mutant
Domains for 7ea9:
1. Domain d7ea9a2: 7ea9 A:222-575 [401989]
  Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
  automated match to d3bjua2
  complexed with gol, kaa; mutant
2. Domain d7ea9b2: 7ea9 B:222-575 [401996]
  Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
  automated match to d3bjua2
  complexed with gol, kaa; mutant
3. Domain d7ea9c2: 7ea9 C:222-575 [401983]
  Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
  automated match to d3bjua2
  complexed with gol, kaa; mutant
4. Domain d7ea9d2: 7ea9 D:222-575 [402045]
  Other proteins in same PDB: d7ea9a1, d7ea9b1, d7ea9c1, d7ea9d1
  automated match to d3bjua2
  complexed with gol, kaa; mutant

Malaria parasite (Plasmodium falciparum) [TaxId:5833] [389675] (1 PDB entry)
- Domains for 7bt5:
  1. Domain d7bt5a2: 7bt5 A:229-581 [389676]
    Other proteins in same PDB: d7bt5a1, d7bt5b1
    automated match to d3bjua2
    protein/RNA complex; complexed with f6o, lys
  2. Domain d7bt5b2: 7bt5 B:229-581 [389713]
    Other proteins in same PDB: d7bt5a1, d7bt5b1
    automated match to d3bjua2
    protein/RNA complex; complexed with f6o, lys
Mycobacterium thermoresistibile [TaxId:1078020] [338442] (1 PDB entry)
- Domains for 6aqh:
  1. Domain d6aqha2: 6aqh A:157-497 [338446]
    Other proteins in same PDB: d6aqha1, d6aqhb1, d6aqhc1, d6aqhd1
    automated match to d3bjua2
    protein/RNA complex; complexed with edo, krs, lys
  2. Domain d6aqhb2: 6aqh B:157-498 [338445]
    Other proteins in same PDB: d6aqha1, d6aqhb1, d6aqhc1, d6aqhd1
    automated match to d3bjua2
    protein/RNA complex; complexed with edo, krs, lys
  3. Domain d6aqhc2: 6aqh C:157-497 [338447]
    Other proteins in same PDB: d6aqha1, d6aqhb1, d6aqhc1, d6aqhd1
    automated match to d3bjua2
    protein/RNA complex; complexed with edo, krs, lys
  4. Domain d6aqhd2: 6aqh D:157-498 [338444]
    Other proteins in same PDB: d6aqha1, d6aqhb1, d6aqhc1, d6aqhd1
    automated match to d3bjua2
    protein/RNA complex; complexed with edo, krs, lys
Mycobacterium tuberculosis [TaxId:83332] [398845] (3 PDB entries)
1. Domain for 7daw:
  - Domain d7dawa_: 7daw A: [398846]
    automated match to d3pcoa_
    complexed with so4
2. Domain for 7db7:
  - Domain d7db7a_: 7db7 A: [398858]
    automated match to d3pcoa_
    protein/RNA complex; complexed with h2l, so4
3. Domain for 7db8:
  - Domain d7db8a_: 7db8 A: [398946]
    automated match to d3pcoa_
    protein/RNA complex; complexed with h2r, so4
Mycobacterium ulcerans [TaxId:362242] [334394] (2 PDB entries)
1. Domains for 5vl1:
  1. Domain d5vl1a2: 5vl1 A:154-494 [334676]
    Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
    automated match to d3bjua2
    protein/RNA complex; complexed with lys, peg, pge
  2. Domain d5vl1b2: 5vl1 B:151-494 [334395]
    Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
    automated match to d3bjua2
    protein/RNA complex; complexed with lys, peg, pge
  3. Domain d5vl1c2: 5vl1 C:154-494 [334496]
    Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
    automated match to d3bjua2
    protein/RNA complex; complexed with lys, peg, pge
  4. Domain d5vl1d2: 5vl1 D:151-494 [334402]
    Other proteins in same PDB: d5vl1a1, d5vl1b1, d5vl1c1, d5vl1d1
    automated match to d3bjua2
    protein/RNA complex; complexed with lys, peg, pge
2. Domains for 6aqg:
  1. Domain d6aqga2: 6aqg A:154-495 [338468]
    Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
    automated match to d3bjua2
    protein/RNA complex; complexed with krs, lys, mpd
  2. Domain d6aqgb2: 6aqg B:154-495 [338471]
    Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
    automated match to d3bjua2
    protein/RNA complex; complexed with krs, lys, mpd
  3. Domain d6aqgc2: 6aqg C:154-496 [338449]
    Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
    automated match to d3bjua2
    protein/RNA complex; complexed with krs, lys, mpd
  4. Domain d6aqgd2: 6aqg D:152-496 [338484]
    Other proteins in same PDB: d6aqga1, d6aqgb1, d6aqgc1, d6aqgd1
    automated match to d3bjua2
    protein/RNA complex; complexed with krs, lys, mpd
Onchocerca volvulus [TaxId:6282] [359086] (1 PDB entry)
- Domain for 6mn8:
  - Domain d6mn8a1: 6mn8 A:54-327 [359087]
    Other proteins in same PDB: d6mn8a2, d6mn8a3
    automated match to d1hc7a2
    complexed with 2pn, amp, anp, gly, hfg, mg, ser
Phytophthora sojae [TaxId:67593] [371711] (1 PDB entry)
- Domains for 5zy9:
  1. Domain d5zy9c1: 5zy9 C:1-293 [371776]
    Other proteins in same PDB: d5zy9c2, d5zy9d2, d5zy9e2
    automated match to d4p3na1
    complexed with 2cr, zn
  2. Domain d5zy9d1: 5zy9 D:1-293 [371721]
    Other proteins in same PDB: d5zy9c2, d5zy9d2, d5zy9e2
    automated match to d4p3na1
    complexed with 2cr, zn
  3. Domain d5zy9e1: 5zy9 E:3-293 [371712]
    Other proteins in same PDB: d5zy9c2, d5zy9d2, d5zy9e2
    automated match to d4p3na1
    complexed with 2cr, zn
Plasmodium falciparum [TaxId:36329] [234567] (7 PDB entries)
1. Domains for 4h02:
  1. Domain d4h02a2: 4h02 A:229-581 [234568]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  2. Domain d4h02b2: 4h02 B:229-581 [234569]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  3. Domain d4h02c2: 4h02 C:229-583 [234576]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  4. Domain d4h02d2: 4h02 D:229-581 [234577]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  5. Domain d4h02e2: 4h02 E:229-581 [234578]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  6. Domain d4h02f2: 4h02 F:229-581 [234580]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  7. Domain d4h02g2: 4h02 G:229-581 [234579]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
  8. Domain d4h02h2: 4h02 H:229-581 [234581]
    Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
    automated match to d4dpgb2
2. Domains for 4pg3:
  1. Domain d4pg3a2: 4pg3 A:230-581 [258137]
    Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
    automated match to d3bjua2
    complexed with krs, lys
  2. Domain d4pg3b2: 4pg3 B:229-581 [263477]
    Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
    automated match to d3bjua2
    complexed with krs, lys
  3. Domain d4pg3c2: 4pg3 C:229-581 [263479]
    Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
    automated match to d3bjua2
    complexed with krs, lys
  4. Domain d4pg3d2: 4pg3 D:230-581 [258135]
    Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
    automated match to d3bjua2
    complexed with krs, lys
3. Domains for 6hcu:
  1. Domain d6hcua2: 6hcu A:229-582 [367126]
    Other proteins in same PDB: d6hcua1, d6hcub1
    automated match to d3bjua2
    complexed with fyb, his, lys, peg, trs
  2. Domain d6hcub2: 6hcu B:229-582 [367121]
    Other proteins in same PDB: d6hcua1, d6hcub1
    automated match to d3bjua2
    complexed with fyb, his, lys, peg, trs
4. Domains for 6hcv:
  1. Domain d6hcva2: 6hcv A:230-582 [367115]
    Other proteins in same PDB: d6hcva1, d6hcvb1
    automated match to d4h02a2
    protein/RNA complex; complexed with fye
  2. Domain d6hcvb2: 6hcv B:230-582 [367195]
    Other proteins in same PDB: d6hcva1, d6hcvb1
    automated match to d4h02a2
    protein/RNA complex; complexed with fye
5. Domains for 6l3y:
  1. Domain d6l3ya2: 6l3y A:230-581 [405458]
    Other proteins in same PDB: d6l3ya1, d6l3yb1
    automated match to d3bjua2
    protein/RNA complex; complexed with e5c, lys, po4
  2. Domain d6l3yb2: 6l3y B:230-581 [405449]
    Other proteins in same PDB: d6l3ya1, d6l3yb1
    automated match to d3bjua2
    protein/RNA complex; complexed with e5c, lys, po4
6. Domains for 6l4q:
  1. Domain d6l4qa2: 6l4q A:229-581 [405441]
    Other proteins in same PDB: d6l4qa1, d6l4qb1
    automated match to d3bjua2
    protein/RNA complex; complexed with e5r, lys
  2. Domain d6l4qb2: 6l4q B:229-581 [405443]
    Other proteins in same PDB: d6l4qa1, d6l4qb1
    automated match to d3bjua2
    protein/RNA complex; complexed with e5r, lys
7. Domains for 6m0t:
  1. Domain d6m0ta2: 6m0t A:229-581 [403622]
    Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
    automated match to d3bjua2
    protein/RNA complex; complexed with ez3, lys
  2. Domain d6m0tb2: 6m0t B:229-581 [403638]
    Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
    automated match to d3bjua2
    protein/RNA complex; complexed with ez3, lys
  3. Domain d6m0tc2: 6m0t C:229-581 [403724]
    Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
    automated match to d3bjua2
    protein/RNA complex; complexed with ez3, lys
  4. Domain d6m0td2: 6m0t D:229-581 [403658]
    Other proteins in same PDB: d6m0ta1, d6m0tb1, d6m0tc1, d6m0td1
    automated match to d3bjua2
    protein/RNA complex; complexed with ez3, lys
Plasmodium falciparum [TaxId:5843] [354075] (9 PDB entries)
1. Domains for 5zh2:
  1. Domain d5zh2a2: 5zh2 A:230-581 [354165]
    Other proteins in same PDB: d5zh2a1, d5zh2b1
    automated match to d3bjua2
    complexed with 9cu, cl, lys, mpo
  2. Domain d5zh2b2: 5zh2 B:230-581 [354153]
    Other proteins in same PDB: d5zh2a1, d5zh2b1
    automated match to d3bjua2
    complexed with 9cu, cl, lys, mpo
2. Domains for 5zh3:
  1. Domain d5zh3a2: 5zh3 A:230-581 [354101]
    Other proteins in same PDB: d5zh3a1, d5zh3b1
    automated match to d3bjua2
    complexed with 9cf, lys
  2. Domain d5zh3b2: 5zh3 B:230-581 [354084]
    Other proteins in same PDB: d5zh3a1, d5zh3b1
    automated match to d3bjua2
    complexed with 9cf, lys
3. Domains for 5zh4:
  1. Domain d5zh4a2: 5zh4 A:230-581 [354094]
    Other proteins in same PDB: d5zh4a1, d5zh4b1
    automated match to d3bjua2
    complexed with 9cc, cl, lys
  2. Domain d5zh4b2: 5zh4 B:231-581 [354076]
    Other proteins in same PDB: d5zh4a1, d5zh4b1
    automated match to d3bjua2
    complexed with 9cc, cl, lys
4. Domains for 5zh5:
  1. Domain d5zh5a2: 5zh5 A:230-581 [354099]
    Other proteins in same PDB: d5zh5a1, d5zh5b1
    automated match to d3bjua2
    complexed with 9cx, cl, lys
  2. Domain d5zh5b2: 5zh5 B:230-581 [354150]
    Other proteins in same PDB: d5zh5a1, d5zh5b1
    automated match to d3bjua2
    complexed with 9cx, cl, lys
5. Domains for 6agt:
  1. Domain d6agta2: 6agt A:230-582 [365725]
    Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
    automated match to d3bjua2
    complexed with 9x0, co, fmt, lys, mla
  2. Domain d6agtb2: 6agt B:229-583 [365731]
    Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
    automated match to d3bjua2
    complexed with 9x0, co, fmt, lys, mla
  3. Domain d6agtc2: 6agt C:230-583 [365794]
    Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
    automated match to d3bjua2
    complexed with 9x0, co, fmt, lys, mla
  4. Domain d6agtd2: 6agt D:231-581 [365724]
    Other proteins in same PDB: d6agta1, d6agtb1, d6agtc1, d6agtd1
    automated match to d3bjua2
    complexed with 9x0, co, fmt, lys, mla
6. Domains for 6ka6:
  1. Domain d6ka6a2: 6ka6 A:229-582 [383343]
    Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4o, gol, lys
  2. Domain d6ka6b2: 6ka6 B:229-582 [383307]
    Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4o, gol, lys
  3. Domain d6ka6c2: 6ka6 C:229-582 [383541]
    Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4o, gol, lys
  4. Domain d6ka6d2: 6ka6 D:229-581 [383383]
    Other proteins in same PDB: d6ka6a1, d6ka6b1, d6ka6c1, d6ka6d1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4o, gol, lys
7. Domains for 6kab:
  1. Domain d6kaba2: 6kab A:229-583 [383348]
    Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4u, lys
  2. Domain d6kabb2: 6kab B:229-582 [383569]
    Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4u, lys
  3. Domain d6kabc2: 6kab C:229-582 [383376]
    Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4u, lys
  4. Domain d6kabd2: 6kab D:230-582 [383419]
    Other proteins in same PDB: d6kaba1, d6kabb1, d6kabc1, d6kabd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4u, lys
8. Domains for 6kbf:
  1. Domain d6kbfa2: 6kbf A:229-582 [383374]
    Other proteins in same PDB: d6kbfa1, d6kbfb1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4x, dms, gol, lys
  2. Domain d6kbfb2: 6kbf B:229-581 [383309]
    Other proteins in same PDB: d6kbfa1, d6kbfb1
    automated match to d3bjua2
    protein/RNA complex; complexed with d4x, dms, gol, lys
9. Domains for 6kcn:
  1. Domain d6kcna2: 6kcn A:229-582 [383498]
    Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d5f, gol, lys
  2. Domain d6kcnb2: 6kcn B:229-582 [383341]
    Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d5f, gol, lys
  3. Domain d6kcnc2: 6kcn C:230-582 [383452]
    Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d5f, gol, lys
  4. Domain d6kcnd2: 6kcn D:229-582 [383318]
    Other proteins in same PDB: d6kcna1, d6kcnb1, d6kcnc1, d6kcnd1
    automated match to d3bjua2
    protein/RNA complex; complexed with d5f, gol, lys
Pyrococcus horikoshii [TaxId:53953] [230395] (3 PDB entries)
1. Domain for 1x54:
  - Domain d1x54a2: 1x54 A:105-434 [230396]
    Other proteins in same PDB: d1x54a1
    automated match to d1b8aa2
    protein/RNA complex; complexed with 4ad, mg, mpd
2. Domain for 1x55:
  - Domain d1x55a2: 1x55 A:105-434 [230398]
    Other proteins in same PDB: d1x55a1
    automated match to d1b8aa2
    protein/RNA complex; complexed with mg, nss, po4
3. Domain for 1x56:
  - Domain d1x56a2: 1x56 A:105-434 [230400]
    Other proteins in same PDB: d1x56a1
    automated match to d1b8aa2
Staphylococcus haemolyticus [TaxId:1283] [225371] (2 PDB entries)
1. Domain for 2rhq:
  - Domain d2rhqa1: 2rhq A:84-351 [206133]
    Other proteins in same PDB: d2rhqa2
    automated match to d1b7ya_
    complexed with gax, zn
2. Domains for 2rhs:
  1. Domain d2rhsa_: 2rhs A: [206134]
    Other proteins in same PDB: d2rhsc2
    automated match to d1b7ya_
    complexed with gax, so4, zn
  2. Domain d2rhsc1: 2rhs C:84-351 [206135]
    Other proteins in same PDB: d2rhsc2
    automated match to d1b7ya_
    complexed with gax, so4, zn
Stenotrophomonas maltophilia [TaxId:522373] [383534] (1 PDB entry)
- Domains for 6wbd:
  1. Domain d6wbda2: 6wbd A:163-499 [383535]
    Other proteins in same PDB: d6wbda1, d6wbdb1
    automated match to d1bbua2
    complexed with cl, edo, lys
  2. Domain d6wbdb2: 6wbd B:160-501 [383576]
    Other proteins in same PDB: d6wbda1, d6wbdb1
    automated match to d1bbua2
    complexed with cl, edo, lys
Sulfolobus tokodaii [TaxId:273063] [230390] (1 PDB entry)
- Domains for 1wyd:
  1. Domain d1wyda2: 1wyd A:101-429 [230391]
    Other proteins in same PDB: d1wyda1, d1wydb1
    automated match to d1b8aa2
    complexed with cl, epe, so4
  2. Domain d1wydb2: 1wyd B:101-429 [230393]
    Other proteins in same PDB: d1wyda1, d1wydb1
    automated match to d1b8aa2
    complexed with cl, epe, so4
Thermococcus kodakarensis [TaxId:311400] [226766] (3 PDB entries)
1. Domains for 3nel:
  1. Domain d3nela2: 3nel A:103-316,A:317-438 [213896]
    Other proteins in same PDB: d3nela1, d3nelb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with asp
  2. Domain d3nelb2: 3nel B:103-316,B:317-438 [213898]
    Other proteins in same PDB: d3nela1, d3nelb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with asp
2. Domains for 3nem:
  1. Domain d3nema2: 3nem A:103-316,A:317-438 [213900]
    Other proteins in same PDB: d3nema1, d3nemb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with amo, atp, mg
  2. Domain d3nemb2: 3nem B:103-316,B:317-438 [213902]
    Other proteins in same PDB: d3nema1, d3nemb1
    automated match to d1c0aa3
    protein/RNA complex; complexed with amo, atp, mg
3. Domains for 3nen:
  1. Domain d3nena2: 3nen A:103-316,A:317-438 [213904]
    Other proteins in same PDB: d3nena1, d3nenb1
    automated match to d1c0aa3
  2. Domain d3nenb2: 3nen B:103-316,B:317-438 [213906]
    Other proteins in same PDB: d3nena1, d3nenb1
    automated match to d1c0aa3
Thermus thermophilus [TaxId:274] [366306] (1 PDB entry)
- Domain for 5zg8:
  - Domain d5zg8a2: 5zg8 A:101-438 [366307]
    Other proteins in same PDB: d5zg8a1
    automated match to d1x54a2

More info for Protein automated matches from d.104.1.0: automated matches

Timeline for Protein automated matches from d.104.1.0: automated matches:

Protein automated matches from d.104.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.104.1.0: automated matches appears in SCOPe 2.07