Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1576363Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 1576364Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 1579036Family c.2.1.5: LDH N-terminal domain-like [51848] (9 proteins)
  6. 1579368Protein automated matches [226881] (6 species)
    not a true protein

Species:

  1. 1579369Cryptosporidium parvum [TaxId:353152] [261793] (5 PDB entries)
    1. Domain for 4nd1:
    2. Domains for 4nd2:
      1. 1579370Domain d4nd2a1: 4nd2 A:17-164 [261812]
        Other proteins in same PDB: d4nd2a2, d4nd2b2
        automated match to d2ewda1
        complexed with a3d, gol, pyr
      2. 1579371Domain d4nd2b1: 4nd2 B:17-164 [261815]
        Other proteins in same PDB: d4nd2a2, d4nd2b2
        automated match to d2ewda1
        complexed with a3d, gol, pyr
    3. Domains for 4nd3:
      1. 1579372Domain d4nd3a1: 4nd3 A:17-164 [261806]
        Other proteins in same PDB: d4nd3a2, d4nd3b2
        automated match to d2ewda1
        complexed with 2op, gol, nad
      2. 1579373Domain d4nd3b1: 4nd3 B:17-164 [261814]
        Other proteins in same PDB: d4nd3a2, d4nd3b2
        automated match to d2ewda1
        complexed with 2op, gol, nad
    4. Domains for 4nd4:
      1. 1579375Domain d4nd4a1: 4nd4 A:17-164 [261818]
        Other proteins in same PDB: d4nd4a2, d4nd4b2
        automated match to d2ewda1
        complexed with gol, nad, pyr
      2. 1579376Domain d4nd4b1: 4nd4 B:17-164 [261819]
        Other proteins in same PDB: d4nd4a2, d4nd4b2
        automated match to d2ewda1
        complexed with gol, nad, pyr
    5. Domains for 4nd5:
      1. 1579377Domain d4nd5a1: 4nd5 A:17-164 [261797]
        Other proteins in same PDB: d4nd5a2, d4nd5b2, d4nd5c2, d4nd5d2
        automated match to d2ewda1
      2. 1579378Domain d4nd5b1: 4nd5 B:17-164 [261796]
        Other proteins in same PDB: d4nd5a2, d4nd5b2, d4nd5c2, d4nd5d2
        automated match to d2ewda1
      3. 1579379Domain d4nd5c1: 4nd5 C:18-164 [261798]
        Other proteins in same PDB: d4nd5a2, d4nd5b2, d4nd5c2, d4nd5d2
        automated match to d2ewda1
      4. 1579380Domain d4nd5d1: 4nd5 D:18-164 [261799]
        Other proteins in same PDB: d4nd5a2, d4nd5b2, d4nd5c2, d4nd5d2
        automated match to d2ewda1
  2. 1579381Haloarcula marismortui [TaxId:2238] [225147] (4 PDB entries)
    1. Domains for 2j5k:
      1. 1579386Domain d2j5ka1: 2j5k A:22-162 [138037]
        Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
        automated match to d1o6za1
        complexed with cl
      2. 1579387Domain d2j5kb1: 2j5k B:22-162 [138039]
        Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
        automated match to d1o6za1
        complexed with cl
      3. 1579388Domain d2j5kc1: 2j5k C:22-162 [138041]
        Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
        automated match to d1o6za1
        complexed with cl
      4. 1579389Domain d2j5kd1: 2j5k D:22-162 [138043]
        Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
        automated match to d1o6za1
        complexed with cl
    2. Domains for 2j5q:
      1. 1579390Domain d2j5qa1: 2j5q A:22-162 [138051]
        Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
        automated match to d1o6za1
        complexed with cl
      2. 1579391Domain d2j5qb1: 2j5q B:22-162 [138053]
        Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
        automated match to d1o6za1
        complexed with cl
      3. 1579392Domain d2j5qc1: 2j5q C:22-162 [138055]
        Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
        automated match to d1o6za1
        complexed with cl
      4. 1579393Domain d2j5qd1: 2j5q D:22-162 [138057]
        Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
        automated match to d1o6za1
        complexed with cl
    3. Domains for 2j5r:
      1. 1579394Domain d2j5ra1: 2j5r A:22-162 [138059]
        Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
        automated match to d1o6za1
        complexed with cl
      2. 1579395Domain d2j5rb1: 2j5r B:22-162 [138061]
        Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
        automated match to d1o6za1
        complexed with cl
      3. 1579396Domain d2j5rc1: 2j5r C:22-162 [138063]
        Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
        automated match to d1o6za1
        complexed with cl
      4. 1579397Domain d2j5rd1: 2j5r D:22-162 [138065]
        Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
        automated match to d1o6za1
        complexed with cl
    4. Domains for 4jco:
      1. 1579382Domain d4jcoa1: 4jco A:22-162 [223695]
        Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
        automated match to d1o6za1
        complexed with cl, na
      2. 1579383Domain d4jcob1: 4jco B:22-162 [223697]
        Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
        automated match to d1o6za1
        complexed with cl, na
      3. 1579384Domain d4jcoc1: 4jco C:22-162 [223699]
        Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
        automated match to d1o6za1
        complexed with cl, na
      4. 1579385Domain d4jcod1: 4jco D:22-162 [223701]
        Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
        automated match to d1o6za1
        complexed with cl, na
  3. 1579398Human (Homo sapiens) [TaxId:9606] [225056] (1 PDB entry)
  4. 1579403Malaria parasite (Plasmodium falciparum) [TaxId:5833] [254908] (5 PDB entries)
    1. Domain for 1u4o:
    2. Domain for 1u4s:
    3. Domain for 1u5c:
    4. Domain for 1xiv:
    5. Domain for 4plz:
  5. 1579409Rabbit (Oryctolagus cuniculus) [TaxId:9986] [225718] (5 PDB entries)
    1. Domains for 3h3f:
      1. 1579426Domain d3h3fa1: 3h3f A:1-159 [210814]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
      2. 1579427Domain d3h3fb1: 3h3f B:1-159 [210816]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
      3. 1579428Domain d3h3fc1: 3h3f C:1-159 [210818]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
      4. 1579429Domain d3h3fd1: 3h3f D:1-159 [210820]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
      5. 1579430Domain d3h3fe1: 3h3f E:1-159 [210822]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
      6. 1579431Domain d3h3ff1: 3h3f F:1-159 [210824]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
      7. 1579432Domain d3h3fg1: 3h3f G:1-159 [210826]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
      8. 1579433Domain d3h3fh1: 3h3f H:1-159 [210828]
        Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
        automated match to d9ldta1
        complexed with act, nai, oxm
    2. Domains for 4i8x:
      1. 1579418Domain d4i8xa1: 4i8x A:1-159 [223016]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
      2. 1579419Domain d4i8xb1: 4i8x B:1-159 [223018]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
      3. 1579420Domain d4i8xc1: 4i8x C:1-159 [223020]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
      4. 1579421Domain d4i8xd1: 4i8x D:1-159 [223022]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
      5. 1579422Domain d4i8xe1: 4i8x E:1-159 [223024]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
      6. 1579423Domain d4i8xf1: 4i8x F:1-159 [223026]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
      7. 1579424Domain d4i8xg1: 4i8x G:1-159 [223028]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
      8. 1579425Domain d4i8xh1: 4i8x H:1-159 [223030]
        Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
        automated match to d9ldta1
        complexed with 6p3
    3. Domains for 4i9h:
      1. 1579410Domain d4i9ha1: 4i9h A:1-159 [223034]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
      2. 1579411Domain d4i9hb1: 4i9h B:1-159 [223036]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
      3. 1579412Domain d4i9hc1: 4i9h C:1-159 [223038]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
      4. 1579413Domain d4i9hd1: 4i9h D:1-159 [223040]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
      5. 1579414Domain d4i9he1: 4i9h E:1-159 [223042]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
      6. 1579415Domain d4i9hf1: 4i9h F:1-159 [223044]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
      7. 1579416Domain d4i9hg1: 4i9h G:1-159 [223046]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
      8. 1579417Domain d4i9hh1: 4i9h H:1-159 [223048]
        Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
        automated match to d9ldta1
        complexed with 1e4
    4. Domains for 4i9n:
      1. 1579434Domain d4i9na1: 4i9n A:1-159 [223050]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
      2. 1579435Domain d4i9nb1: 4i9n B:1-159 [223052]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
      3. 1579436Domain d4i9nc1: 4i9n C:1-159 [223054]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
      4. 1579437Domain d4i9nd1: 4i9n D:1-159 [223056]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
      5. 1579438Domain d4i9ne1: 4i9n E:1-159 [223058]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
      6. 1579439Domain d4i9nf1: 4i9n F:1-159 [223060]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
      7. 1579440Domain d4i9ng1: 4i9n G:1-159 [223062]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
      8. 1579441Domain d4i9nh1: 4i9n H:1-159 [223064]
        Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
        automated match to d9ldta1
        complexed with 1e5, 1e6
    5. Domains for 4i9u:
      1. 1579442Domain d4i9ua1: 4i9u A:1-159 [223066]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
      2. 1579443Domain d4i9ub1: 4i9u B:1-159 [223068]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
      3. 1579444Domain d4i9uc1: 4i9u C:1-159 [223070]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
      4. 1579445Domain d4i9ud1: 4i9u D:1-159 [223072]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
      5. 1579446Domain d4i9ue1: 4i9u E:1-159 [223074]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
      6. 1579447Domain d4i9uf1: 4i9u F:1-159 [223076]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
      7. 1579448Domain d4i9ug1: 4i9u G:1-159 [223078]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
      8. 1579449Domain d4i9uh1: 4i9u H:1-159 [223080]
        Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
        automated match to d9ldta1
        complexed with 1e7
  6. 1579450Toxoplasma gondii [TaxId:5811] [233099] (1 PDB entry)

More info for Protein automated matches from c.2.1.5: LDH N-terminal domain-like

Timeline for Protein automated matches from c.2.1.5: LDH N-terminal domain-like: