SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
Fold f.44: Ammonium transporter [111351] (1 superfamily)
11 transmembrane helices; duplication: consist of 2 structural repeats of five helices each plus extra C-terminal helix
Superfamily f.44.1: Ammonium transporter [111352] (2 families)
automatically mapped to Pfam PF00909
Family f.44.1.0: automated matches [227165] (1 protein)
not a true family
Protein automated matches [226873] (5 species)
not a true protein

Species:

Archaeoglobus fulgidus [TaxId:2234] [225026] (4 PDB entries)
1. Domain for 2b2f:
  - Domain d2b2fa_: 2b2f A: [203540]
    automated match to d1xqfa_
2. Domain for 2b2h:
  - Domain d2b2ha_: 2b2h A: [203541]
    automated match to d1xqfa_
3. Domain for 2b2i:
  - Domain d2b2ia_: 2b2i A: [203542]
    automated match to d1xqfa_
4. Domain for 2b2j:
  - Domain d2b2ja_: 2b2j A: [203543]
    automated match to d1xqfa_
    complexed with xe
Escherichia coli K-12 [TaxId:83333] [255512] (2 PDB entries)
1. Domain for 2ns1:
  - Domain d2ns1a_: 2ns1 A: [138545]
    Other proteins in same PDB: d2ns1b1, d2ns1b2
    automated match to d2b2ha_
    complexed with adp, bog, trs
2. Domains for 4nh2:
  1. Domain d4nh2b1: 4nh2 B:4-385 [263142]
    Other proteins in same PDB: d4nh2a2, d4nh2b2, d4nh2c2, d4nh2d2, d4nh2e2, d4nh2f2
    automated match to d2ns1a_
    complexed with p6l
  2. Domain d4nh2c1: 4nh2 C:4-385 [263143]
    Other proteins in same PDB: d4nh2a2, d4nh2b2, d4nh2c2, d4nh2d2, d4nh2e2, d4nh2f2
    automated match to d2ns1a_
    complexed with p6l
  3. Domain d4nh2d1: 4nh2 D:4-385 [263144]
    Other proteins in same PDB: d4nh2a2, d4nh2b2, d4nh2c2, d4nh2d2, d4nh2e2, d4nh2f2
    automated match to d2ns1a_
    complexed with p6l
  4. Domain d4nh2e1: 4nh2 E:4-385 [263145]
    Other proteins in same PDB: d4nh2a2, d4nh2b2, d4nh2c2, d4nh2d2, d4nh2e2, d4nh2f2
    automated match to d2ns1a_
    complexed with p6l
  5. Domain d4nh2f1: 4nh2 F:4-385 [263146]
    Other proteins in same PDB: d4nh2a2, d4nh2b2, d4nh2c2, d4nh2d2, d4nh2e2, d4nh2f2
    automated match to d2ns1a_
    complexed with p6l

Escherichia coli [TaxId:562] [255505] (14 PDB entries)

Domain for 2nmr:
- Domain d2nmra_: 2nmr A: [138378]
  automated match to d2b2ha_
  complexed with act, gol, so4
Domain for 2nop:
- Domain d2nopa_: 2nop A: [138413]
  automated match to d2b2ha_
  complexed with act, gol, imd, so4
Domain for 2now:
- Domain d2nowa_: 2now A: [243214]
  automated match to d2b2ha_
  complexed with act, gol, so4
Domain for 2npc:
- Domain d2npca_: 2npc A: [243217]
  automated match to d2b2ha_
  complexed with act, imd
Domain for 2npd:
- Domain d2npda_: 2npd A: [243218]
  automated match to d2b2ha_
  complexed with act, imd
Domain for 2npe:
- Domain d2npea_: 2npe A: [243219]
  automated match to d2b2ha_
  complexed with act, so4
Domain for 2npg:
- Domain d2npga_: 2npg A: [243220]
  automated match to d2b2ha_
  complexed with act, gol, so4
Domain for 2npj:
- Domain d2npja_: 2npj A: [243221]
  automated match to d2b2ha_
  complexed with act, imd
Domain for 2npk:
- Domain d2npka_: 2npk A: [243222]
  automated match to d2b2ha_
  complexed with act, gol, imd, so4

Domains for 2nuu:

Domain d2nuua2: 2nuu A:3-406 [138611]
Other proteins in same PDB: d2nuua3, d2nuub3, d2nuuc3, d2nuud3, d2nuue3, d2nuuf3, d2nuug_, d2nuuh_, d2nuui_, d2nuuj_, d2nuuk_, d2nuul_
automated match to d2b2ha_
complexed with adp

Domain d2nuub2: 2nuu B:3-406 [138612]
Other proteins in same PDB: d2nuua3, d2nuub3, d2nuuc3, d2nuud3, d2nuue3, d2nuuf3, d2nuug_, d2nuuh_, d2nuui_, d2nuuj_, d2nuuk_, d2nuul_
automated match to d2b2ha_
complexed with adp

Domain d2nuuc2: 2nuu C:3-406 [138613]
Other proteins in same PDB: d2nuua3, d2nuub3, d2nuuc3, d2nuud3, d2nuue3, d2nuuf3, d2nuug_, d2nuuh_, d2nuui_, d2nuuj_, d2nuuk_, d2nuul_
automated match to d2b2ha_
complexed with adp

Domain d2nuud2: 2nuu D:3-406 [138614]
Other proteins in same PDB: d2nuua3, d2nuub3, d2nuuc3, d2nuud3, d2nuue3, d2nuuf3, d2nuug_, d2nuuh_, d2nuui_, d2nuuj_, d2nuuk_, d2nuul_
automated match to d2b2ha_
complexed with adp

Domain d2nuue2: 2nuu E:3-406 [138615]
Other proteins in same PDB: d2nuua3, d2nuub3, d2nuuc3, d2nuud3, d2nuue3, d2nuuf3, d2nuug_, d2nuuh_, d2nuui_, d2nuuj_, d2nuuk_, d2nuul_
automated match to d2b2ha_
complexed with adp

Domain d2nuuf2: 2nuu F:3-406 [138616]
Other proteins in same PDB: d2nuua3, d2nuub3, d2nuuc3, d2nuud3, d2nuue3, d2nuuf3, d2nuug_, d2nuuh_, d2nuui_, d2nuuj_, d2nuuk_, d2nuul_
automated match to d2b2ha_
complexed with adp

Domain for 3c1g:
- Domain d3c1ga_: 3c1g A: [155865]
  automated match to d2b2ha_
  complexed with act, so4
Domain for 3c1h:
- Domain d3c1ha_: 3c1h A: [245409]
  automated match to d2b2ha_
  complexed with act, imd, lda
Domain for 3c1i:
- Domain d3c1ia_: 3c1i A: [245410]
  automated match to d2b2ha_
  complexed with act, lda
Domain for 3c1j:
- Domain d3c1ja_: 3c1j A: [245411]
  automated match to d2b2ha_
  complexed with act, gol, imd

Escherichia coli [TaxId:83333] [349340] (1 PDB entry)
- Domain for 6b21:
  - Domain d6b21a1: 6b21 A:4-385 [349341]
    Other proteins in same PDB: d6b21a2
    automated match to d2ns1a_
    complexed with c9v
Escherichia coli [TaxId:83334] [257156] (1 PDB entry)
- Domain for 4nh2:
  - Domain d4nh2a1: 4nh2 A:4-385 [257157]
    Other proteins in same PDB: d4nh2a2, d4nh2b2, d4nh2c2, d4nh2d2, d4nh2e2, d4nh2f2
    automated match to d2ns1a_
    complexed with p6l

More info for Protein automated matches from f.44.1.0: automated matches

Timeline for Protein automated matches from f.44.1.0: automated matches:

Protein automated matches from f.44.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from f.44.1.0: automated matches appears in SCOPe 2.07