SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class b: All beta proteins [48724] (174 folds)
Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
barrel, closed; n=6, S=10; greek-key
Superfamily b.43.4: Riboflavin synthase domain-like [63380] (4 families)
Family b.43.4.0: automated matches [227162] (1 protein)
not a true family
Protein automated matches [226870] (15 species)
not a true protein

Species:

Anabaena sp. [TaxId:1168] [226792] (1 PDB entry)
- Domain for 2x3u:
  - Domain d2x3ua1: 2x3u A:9-139 [207121]
    Other proteins in same PDB: d2x3ua2
    automated match to d1frna1
    complexed with fad, gol, so4; mutant
Bacillus megaterium [TaxId:1404] [226322] (2 PDB entries)
1. Domains for 4dqk:
  1. Domain d4dqka1: 4dqk A:659-887 [219936]
    Other proteins in same PDB: d4dqka2, d4dqkb2
    automated match to d1tlla1
    complexed with fad, pg4, so4
  2. Domain d4dqkb1: 4dqk B:660-887 [219938]
    Other proteins in same PDB: d4dqka2, d4dqkb2
    automated match to d1tlla1
    complexed with fad, pg4, so4
2. Domains for 4dql:
  1. Domain d4dqla1: 4dql A:661-887 [219940]
    Other proteins in same PDB: d4dqla2, d4dqlb2
    automated match to d1tlla1
    complexed with 1pe, fad, nap, pg4, so4
  2. Domain d4dqlb1: 4dql B:658-887 [219942]
    Other proteins in same PDB: d4dqla2, d4dqlb2
    automated match to d1tlla1
    complexed with 1pe, fad, nap, pg4, so4
Brucella abortus [TaxId:235] [228298] (4 PDB entries)
1. Domains for 4e0f:
  1. Domain d4e0fa1: 4e0f A:1-96 [228299]
    automated match to d1kzla1
    complexed with rbf
  2. Domain d4e0fa2: 4e0f A:97-200 [228300]
    automated match to d1kzla2
    complexed with rbf
  3. Domain d4e0fb1: 4e0f B:1-96 [234347]
    automated match to d4e0fa1
    complexed with rbf
  4. Domain d4e0fb2: 4e0f B:97-203 [234348]
    automated match to d4e0fa2
    complexed with rbf
  5. Domain d4e0fc1: 4e0f C:1-96 [234349]
    automated match to d4e0fa1
    complexed with rbf
  6. Domain d4e0fc2: 4e0f C:97-202 [234350]
    automated match to d4e0fa2
    complexed with rbf
2. Domains for 4fxu:
  1. Domain d4fxua1: 4fxu A:1-96 [237583]
    automated match to d4e0fa1
  2. Domain d4fxua2: 4fxu A:97-200 [237608]
    automated match to d4e0fa2
  3. Domain d4fxub1: 4fxu B:1-96 [237581]
    automated match to d4e0fb1
  4. Domain d4fxub2: 4fxu B:97-201 [237609]
    automated match to d4e0fb2
  5. Domain d4fxuc1: 4fxu C:1-96 [237580]
    automated match to d4e0fa1
  6. Domain d4fxuc2: 4fxu C:97-197 [237610]
    automated match to d4e0fa2
3. Domains for 4g6i:
  1. Domain d4g6ia1: 4g6i A:1-96 [237579]
    automated match to d4e0fa1
    complexed with rs3
  2. Domain d4g6ia2: 4g6i A:97-200 [237602]
    automated match to d4e0fa2
    complexed with rs3
  3. Domain d4g6ib1: 4g6i B:1-96 [237582]
    automated match to d4e0fb1
    complexed with rs3
  4. Domain d4g6ib2: 4g6i B:97-201 [237605]
    automated match to d4e0fb2
    complexed with rs3
  5. Domain d4g6ic1: 4g6i C:1-96 [237578]
    automated match to d4e0fa1
    complexed with rs3
  6. Domain d4g6ic2: 4g6i C:97-199 [237603]
    automated match to d4e0fa2
    complexed with rs3
4. Domains for 4gqn:
  1. Domain d4gqna1: 4gqn A:1-96 [237586]
    automated match to d4e0fa1
    complexed with ini
  2. Domain d4gqna2: 4gqn A:97-200 [237611]
    automated match to d4e0fa2
    complexed with ini
  3. Domain d4gqnb1: 4gqn B:1-96 [237585]
    automated match to d4e0fb1
    complexed with ini
  4. Domain d4gqnb2: 4gqn B:97-205 [237607]
    automated match to d4e0fb2
    complexed with ini
  5. Domain d4gqnc1: 4gqn C:1-96 [237584]
    automated match to d4e0fa1
    complexed with ini
  6. Domain d4gqnc2: 4gqn C:97-200 [237606]
    automated match to d4e0fa2
    complexed with ini
Burkholderia thailandensis [TaxId:271848] [226396] (2 PDB entries)
1. Domains for 4f7d:
  1. Domain d4f7da1: 4f7d A:17-115 [221056]
    Other proteins in same PDB: d4f7da2, d4f7db2
    automated match to d1a8pa1
  2. Domain d4f7db1: 4f7d B:16-115 [221058]
    Other proteins in same PDB: d4f7da2, d4f7db2
    automated match to d1a8pa1
2. Domains for 4fk8:
  1. Domain d4fk8a1: 4fk8 A:18-115 [221244]
    Other proteins in same PDB: d4fk8a2, d4fk8b2
    automated match to d1a8pa1
    complexed with fad
  2. Domain d4fk8b1: 4fk8 B:17-115 [221246]
    Other proteins in same PDB: d4fk8a2, d4fk8b2
    automated match to d1a8pa1
    complexed with fad
Escherichia coli [TaxId:562] [226084] (1 PDB entry)
- Domains for 2xnj:
  1. Domain d2xnja1: 2xnj A:2-109 [207283]
    Other proteins in same PDB: d2xnja2, d2xnjb2
    automated match to d1fdra1
    complexed with fad, gol, na, nap, trs, zn
  2. Domain d2xnjb1: 2xnj B:2-109 [207285]
    Other proteins in same PDB: d2xnja2, d2xnjb2
    automated match to d1fdra1
    complexed with fad, gol, na, nap, trs, zn
Leptospira interrogans [TaxId:173] [225433] (2 PDB entries)
1. Domains for 2rc5:
  1. Domain d2rc5a1: 2rc5 A:7-158 [206042]
    Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
    automated match to d1qufa1
    complexed with fad, so4, zn
  2. Domain d2rc5b1: 2rc5 B:8-158 [206044]
    Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
    automated match to d1qufa1
    complexed with fad, so4, zn
  3. Domain d2rc5c1: 2rc5 C:8-158 [206046]
    Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
    automated match to d1qufa1
    complexed with fad, so4, zn
  4. Domain d2rc5d1: 2rc5 D:8-158 [206048]
    Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
    automated match to d1qufa1
    complexed with fad, so4, zn
2. Domains for 2rc6:
  1. Domain d2rc6a1: 2rc6 A:7-158 [206050]
    Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
    automated match to d1qufa1
    complexed with fad, nap, so4, zn
  2. Domain d2rc6b1: 2rc6 B:7-158 [206052]
    Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
    automated match to d1qufa1
    complexed with fad, nap, so4, zn
  3. Domain d2rc6c1: 2rc6 C:7-158 [206054]
    Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
    automated match to d1qufa1
    complexed with fad, nap, so4, zn
  4. Domain d2rc6d1: 2rc6 D:7-158 [206056]
    Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
    automated match to d1qufa1
    complexed with fad, nap, so4, zn
Maize (Zea mays) [TaxId:4577] [226539] (5 PDB entries)
1. Domain for 3lo8:
  - Domain d3lo8a1: 3lo8 A:8-156 [212979]
    Other proteins in same PDB: d3lo8a2
    automated match to d1frna1
    complexed with fad, na
2. Domain for 3lvb:
  - Domain d3lvba1: 3lvb A:6-156 [213073]
    Other proteins in same PDB: d3lvba2
    automated match to d1frna1
    complexed with fad
3. Domains for 3vo1:
  1. Domain d3vo1a1: 3vo1 A:20-154 [217945]
    Other proteins in same PDB: d3vo1a2, d3vo1b2
    automated match to d1frna1
    complexed with fad
  2. Domain d3vo1b1: 3vo1 B:20-154 [217947]
    Other proteins in same PDB: d3vo1a2, d3vo1b2
    automated match to d1frna1
    complexed with fad
4. Domain for 3vo2:
  - Domain d3vo2a1: 3vo2 A:19-154 [217949]
    Other proteins in same PDB: d3vo2a2, d3vo2b1, d3vo2b2
    automated match to d1frna1
    complexed with fad
5. Domains for 3w5u:
  1. Domain d3w5ua1: 3w5u A:19-154 [201272]
    Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
    automated match to d1frna1
    complexed with fad, fes
  2. Domain d3w5uc1: 3w5u C:19-154 [201274]
    Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
    automated match to d1frna1
    complexed with fad, fes
  3. Domain d3w5ue1: 3w5u E:19-154 [201277]
    Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
    automated match to d1frna1
    complexed with fad, fes
  4. Domain d3w5ug1: 3w5u G:19-154 [201280]
    Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
    automated match to d1frna1
    complexed with fad, fes
Nostoc sp. [TaxId:1168] [225652] (2 PDB entries)
1. Domain for 2vyq:
  - Domain d2vyqa1: 2vyq A:9-139 [206538]
    Other proteins in same PDB: d2vyqa2
    automated match to d1frna1
    complexed with fad, gol, so4; mutant
2. Domain for 2vzl:
  - Domain d2vzla1: 2vzl A:9-139 [206544]
    Other proteins in same PDB: d2vzla2
    automated match to d1frna1
    complexed with fad, gol, nad; mutant
Pea (Pisum sativum) [TaxId:3888] [226803] (3 PDB entries)
1. Domains for 2xnc:
  1. Domain d2xnca1: 2xnc A:14-139 [207279]
    Other proteins in same PDB: d2xnca2, d2xncb2
    automated match to d1frna1
    complexed with fad, so4
  2. Domain d2xncb1: 2xnc B:13-139 [207281]
    Other proteins in same PDB: d2xnca2, d2xncb2
    automated match to d1frna1
    complexed with fad, so4
2. Domains for 4af6:
  1. Domain d4af6a1: 4af6 A:13-148 [218820]
    Other proteins in same PDB: d4af6a2, d4af6b2
    automated match to d1frna1
    complexed with fad; mutant
  2. Domain d4af6b1: 4af6 B:13-148 [218822]
    Other proteins in same PDB: d4af6a2, d4af6b2
    automated match to d1frna1
    complexed with fad; mutant
3. Domains for 4af7:
  1. Domain d4af7a1: 4af7 A:13-148 [218824]
    Other proteins in same PDB: d4af7a2, d4af7b2
    automated match to d1frna1
    complexed with fad; mutant
  2. Domain d4af7b1: 4af7 B:14-148 [218826]
    Other proteins in same PDB: d4af7a2, d4af7b2
    automated match to d1frna1
    complexed with fad; mutant
Rhodobacter capsulatus [TaxId:1061] [225019] (7 PDB entries)
1. Domain for 2bgi:
  - Domain d2bgia1: 2bgi A:16-113 [203594]
    Other proteins in same PDB: d2bgia2
    automated match to d1a8pa1
    complexed with co2, fad, htg, so4
2. Domains for 2bgj:
  1. Domain d2bgja1: 2bgj A:13-113 [203596]
    Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
    automated match to d1a8pa1
    complexed with fad
  2. Domain d2bgjb1: 2bgj B:16-113 [203598]
    Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
    automated match to d1a8pa1
    complexed with fad
  3. Domain d2bgjc1: 2bgj C:16-113 [203600]
    Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
    automated match to d1a8pa1
    complexed with fad
  4. Domain d2bgjd1: 2bgj D:16-113 [203602]
    Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
    automated match to d1a8pa1
    complexed with fad
3. Domain for 2vnh:
  - Domain d2vnha1: 2vnh A:13-113 [206383]
    Other proteins in same PDB: d2vnha2
    automated match to d1a8pa1
    complexed with fad, htg, nap
4. Domain for 2vni:
  - Domain d2vnia1: 2vni A:16-113 [206385]
    Other proteins in same PDB: d2vnia2
    automated match to d1a8pa1
    complexed with a2p, fad, htg
5. Domain for 2vnj:
  - Domain d2vnja1: 2vnj A:16-113 [206387]
    Other proteins in same PDB: d2vnja2
    automated match to d1a8pa1
    complexed with fad, htg, nap
6. Domains for 2vnk:
  1. Domain d2vnka1: 2vnk A:16-113 [206389]
    Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
    automated match to d1a8pa1
    complexed with fad, nap
  2. Domain d2vnkb1: 2vnk B:16-113 [206391]
    Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
    automated match to d1a8pa1
    complexed with fad, nap
  3. Domain d2vnkc1: 2vnk C:16-113 [206393]
    Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
    automated match to d1a8pa1
    complexed with fad, nap
  4. Domain d2vnkd1: 2vnk D:16-113 [206395]
    Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
    automated match to d1a8pa1
    complexed with fad, nap
7. Domains for 4k1x:
  1. Domain d4k1xa1: 4k1x A:16-113 [228949]
    Other proteins in same PDB: d4k1xa2, d4k1xb2
    automated match to d2vnha1
    complexed with fad, so4; mutant
  2. Domain d4k1xb1: 4k1x B:16-113 [235077]
    Other proteins in same PDB: d4k1xa2, d4k1xb2
    automated match to d4k1xa1
    complexed with fad, so4; mutant
Salmonella typhimurium [TaxId:99287] [225604] (1 PDB entry)
- Domains for 3fpk:
  1. Domain d3fpka1: 3fpk A:2-100 [210040]
    Other proteins in same PDB: d3fpka2, d3fpkb2
    automated match to d1fdra1
    complexed with ca, fad, mg
  2. Domain d3fpkb1: 3fpk B:2-100 [210042]
    Other proteins in same PDB: d3fpka2, d3fpkb2
    automated match to d1fdra1
    complexed with ca, fad, mg
Slime mold (Physarum polycephalum) [TaxId:5791] [225253] (1 PDB entry)
- Domains for 2eix:
  1. Domain d2eixa1: 2eix A:39-150 [204127]
    Other proteins in same PDB: d2eixa2, d2eixb2
    automated match to d1i7pa1
    complexed with fad, gol, iod, na
  2. Domain d2eixb1: 2eix B:39-150 [204129]
    Other proteins in same PDB: d2eixa2, d2eixb2
    automated match to d1i7pa1
    complexed with fad, gol, iod, na
Synechococcus sp. [TaxId:32049] [225027] (1 PDB entry)
- Domains for 2b5o:
  1. Domain d2b5oa1: 2b5o A:111-242 [203557]
    Other proteins in same PDB: d2b5oa2, d2b5ob2
    automated match to d1frna1
    complexed with fad, so4
  2. Domain d2b5ob1: 2b5o B:111-242 [203559]
    Other proteins in same PDB: d2b5oa2, d2b5ob2
    automated match to d1frna1
    complexed with fad, so4
Vibrio cholerae [TaxId:243277] [226357] (1 PDB entry)
- Domains for 4eh1:
  1. Domain d4eh1a1: 4eh1 A:2-110 [220536]
    Other proteins in same PDB: d4eh1a2, d4eh1b2
    automated match to d1gvha2
    complexed with cl, fad, gol, so4
  2. Domain d4eh1b1: 4eh1 B:3-110 [220538]
    Other proteins in same PDB: d4eh1a2, d4eh1b2
    automated match to d1gvha2
    complexed with cl, fad, gol, so4
Xanthomonas axonopodis [TaxId:190486] [234119] (1 PDB entry)
- Domain for 4b4d:
  - Domain d4b4da1: 4b4d A:4-101 [234120]
    Other proteins in same PDB: d4b4da2
    automated match to d1a8pa1
    complexed with cl, fad

More info for Protein automated matches from b.43.4.0: automated matches

Timeline for Protein automated matches from b.43.4.0: automated matches:

Protein automated matches from b.43.4.0: automated matches is new in SCOPe 2.03-stable
Protein automated matches from b.43.4.0: automated matches appears in SCOPe 2.04
Protein automated matches from b.43.4.0: automated matches appears in the current release, SCOPe 2.08