SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.122: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase [55873] (1 superfamily)
8-stranded mixed beta-sheet; 2 layers: alpha/beta
Superfamily d.122.1: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase [55874] (5 families)
Family d.122.1.0: automated matches [227160] (1 protein)
not a true family
Protein automated matches [226867] (14 species)
not a true protein

Species:

Enterococcus faecalis [TaxId:226185] [226590] (9 PDB entries)
1. Domain for 4gee:
  - Domain d4geea1: 4gee A:18-224 [221875]
    Other proteins in same PDB: d4geea2
    automated match to d1kzna_
    protein/DNA complex; complexed with 0wt, gol
2. Domain for 4gfn:
  - Domain d4gfna1: 4gfn A:18-224 [221886]
    Other proteins in same PDB: d4gfna2
    automated match to d1kzna_
    protein/DNA complex; complexed with gol, suy
3. Domain for 4ggl:
  - Domain d4ggla1: 4ggl A:18-224 [221894]
    Other proteins in same PDB: d4ggla2
    automated match to d1kzna_
    protein/DNA complex; complexed with cjc, gol
4. Domain for 4hxw:
  - Domain d4hxwa1: 4hxw A:25-231 [222783]
    Other proteins in same PDB: d4hxwa2
    automated match to d1kzna_
    complexed with 1a0, tbu
5. Domains for 4hz5:
  1. Domain d4hz5a_: 4hz5 A: [222804]
    automated match to d1kzna_
    complexed with 19y
  2. Domain d4hz5b_: 4hz5 B: [222805]
    automated match to d1kzna_
    complexed with 19y
  3. Domain d4hz5c_: 4hz5 C: [222806]
    automated match to d1kzna_
    complexed with 19y
  4. Domain d4hz5d_: 4hz5 D: [222807]
    automated match to d1kzna_
    complexed with 19y
  5. Domain d4hz5e_: 4hz5 E: [222808]
    automated match to d1kzna_
    complexed with 19y
  6. Domain d4hz5f_: 4hz5 F: [222809]
    automated match to d1kzna_
    complexed with 19y
  7. Domain d4hz5g_: 4hz5 G: [222810]
    automated match to d1kzna_
    complexed with 19y
  8. Domain d4hz5h_: 4hz5 H: [222811]
    automated match to d1kzna_
    complexed with 19y
  9. Domain d4hz5j_: 4hz5 J: [222812]
    automated match to d1kzna_
    complexed with 19y
6. Domain for 4k4o:
  - Domain d4k4oa1: 4k4o A:18-224 [236029]
    Other proteins in same PDB: d4k4oa2
    automated match to d4geea_
    protein/DNA complex; complexed with doo, tbu
7. Domain for 4ksg:
  - Domain d4ksga1: 4ksg A:18-224 [236035]
    Other proteins in same PDB: d4ksga2
    automated match to d4geea_
    protein/DNA complex; complexed with 920, tbu
8. Domain for 4ksh:
  - Domain d4ksha1: 4ksh A:18-224 [236039]
    Other proteins in same PDB: d4ksha2
    automated match to d4geea_
    protein/DNA complex; complexed with gol, htt
9. Domain for 4ktn:
  - Domain d4ktna1: 4ktn A:18-224 [236040]
    Other proteins in same PDB: d4ktna2
    automated match to d4geea_
    protein/DNA complex; complexed with mju
Escherichia coli K-12 [TaxId:83333] [225819] (2 PDB entries)
1. Domains for 3fv5:
  1. Domain d3fv5a_: 3fv5 A: [210195]
    automated match to d1aj6a_
    complexed with 1eu
  2. Domain d3fv5b_: 3fv5 B: [210196]
    automated match to d1aj6a_
    complexed with 1eu
2. Domains for 4hz0:
  1. Domain d4hz0a_: 4hz0 A: [222802]
    automated match to d1kzna_
    complexed with 1av, mg
  2. Domain d4hz0b_: 4hz0 B: [222803]
    automated match to d1kzna_
    complexed with 1av, mg
Escherichia coli [TaxId:562] [225182] (4 PDB entries)
1. Domain for 2ior:
  - Domain d2iora1: 2ior A:1-211 [204834]
    Other proteins in same PDB: d2iora2
    automated match to d2cgfa_
    complexed with adp, hez, mg
2. Domain for 4prv:
  - Domain d4prva1: 4prv A:5-220 [267210]
    Other proteins in same PDB: d4prva2
    automated match to d3cwvb1
    complexed with adp, mg
3. Domain for 4prx:
  - Domain d4prxa1: 4prx A:4-220 [267212]
    Other proteins in same PDB: d4prxa2
    automated match to d3cwvb1
    complexed with adp, gol, mg, po4
4. Domain for 4pu9:
  - Domain d4pu9a1: 4pu9 A:4-220 [267220]
    Other proteins in same PDB: d4pu9a2
    automated match to d3cwvb1
    complexed with adp, bef, mg
Escherichia coli [TaxId:83333] [271298] (4 PDB entries)
1. Domain for 4wub:
  - Domain d4wuba1: 4wub A:4-220 [271302]
    Other proteins in same PDB: d4wuba2
    automated match to d4prxa1
    complexed with anp, cl, k, mg, na
2. Domain for 4wuc:
  - Domain d4wuca1: 4wuc A:4-220 [271306]
    Other proteins in same PDB: d4wuca2
    automated match to d4prxa1
    complexed with anp, cl, mg, na
3. Domain for 4wud:
  - Domain d4wuda1: 4wud A:4-220 [271299]
    Other proteins in same PDB: d4wuda2
    automated match to d4prxa1
    complexed with anp, cl, mg, na
4. Domain for 4xtj:
  - Domain d4xtja1: 4xtj A:4-220 [271335]
    Other proteins in same PDB: d4xtja2
    automated match to d4prxa1
    complexed with anp, cl, k, mg, na
Escherichia coli [TaxId:83334] [333464] (3 PDB entries)
1. Domain for 5mmn:
  - Domain d5mmna_: 5mmn A: [333465]
    automated match to d4kqvb_
    protein/DNA complex; complexed with o54
2. Domain for 5mmo:
  - Domain d5mmoa_: 5mmo A: [333518]
    automated match to d4kqvb_
    protein/DNA complex; complexed with 9jg, po4
3. Domain for 5mmp:
  - Domain d5mmpa_: 5mmp A: [333545]
    automated match to d4kqvb_
    protein/DNA complex; complexed with g3z
Francisella tularensis [TaxId:376619] [226591] (4 PDB entries)
1. Domains for 4hxz:
  1. Domain d4hxza1: 4hxz A:8-215 [222784]
    Other proteins in same PDB: d4hxza2, d4hxza3
    automated match to d1s16a2
    complexed with 19y
  2. Domain d4hxzb1: 4hxz B:7-215 [222786]
    Other proteins in same PDB: d4hxza2, d4hxza3
    automated match to d1s16a2
    complexed with 19y
2. Domains for 4hy1:
  1. Domain d4hy1a1: 4hy1 A:7-215 [222787]
    Other proteins in same PDB: d4hy1a2
    automated match to d1s16a2
    complexed with 19x
  2. Domain d4hy1b1: 4hy1 B:8-215 [222789]
    Other proteins in same PDB: d4hy1a2
    automated match to d1s16a2
    complexed with 19x
3. Domains for 4hym:
  1. Domain d4hyma1: 4hym A:7-215 [222795]
    Other proteins in same PDB: d4hyma2
    automated match to d1s16a2
    complexed with cjc
  2. Domain d4hymb1: 4hym B:8-215 [222797]
    Other proteins in same PDB: d4hyma2
    automated match to d1s16a2
    complexed with cjc
4. Domains for 4kqv:
  1. Domain d4kqva1: 4kqv A:7-215 [236036]
    Other proteins in same PDB: d4kqva2
    automated match to d4hxza1
    protein/DNA complex; complexed with doo, iod
  2. Domain d4kqvb_: 4kqv B: [236038]
    Other proteins in same PDB: d4kqva2
    automated match to d4hxza1
    protein/DNA complex; complexed with doo, iod
Human (Homo sapiens) [TaxId:9606] [225008] (12 PDB entries)
1. Domains for 1zxm:
  1. Domain d1zxma1: 1zxm A:29-265 [203366]
    Other proteins in same PDB: d1zxma2, d1zxmb2
    automated match to d1pvgb2
    complexed with anp, mg
  2. Domain d1zxmb1: 1zxm B:29-265 [203368]
    Other proteins in same PDB: d1zxma2, d1zxmb2
    automated match to d1pvgb2
    complexed with anp, mg
2. Domains for 1zxn:
  1. Domain d1zxna1: 1zxn A:29-265 [230471]
    Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2
    automated match to d1zxmb1
    complexed with adp, gol, mg, so4
  2. Domain d1zxnb1: 1zxn B:29-265 [230473]
    Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2
    automated match to d1zxmb1
    complexed with adp, gol, mg, so4
  3. Domain d1zxnc1: 1zxn C:29-265 [230475]
    Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2
    automated match to d1zxmb1
    complexed with adp, gol, mg, so4
  4. Domain d1zxnd1: 1zxn D:29-265 [230477]
    Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2
    automated match to d1zxmb1
    complexed with adp, gol, mg, so4
3. Domains for 2e0a:
  1. Domain d2e0aa2: 2e0a A:188-386 [230684]
    Other proteins in same PDB: d2e0aa1, d2e0ab1
    automated match to d1jm6a2
    complexed with anp, mg
  2. Domain d2e0ab2: 2e0a B:188-386 [230682]
    Other proteins in same PDB: d2e0aa1, d2e0ab1
    automated match to d1jm6a2
    complexed with anp, mg
4. Domain for 2q8f:
  - Domain d2q8fa2: 2q8f A:215-423 [243525]
    Other proteins in same PDB: d2q8fa1
    automated match to d2bu8a2
    complexed with k
5. Domain for 2q8g:
  - Domain d2q8ga2: 2q8g A:214-423 [243527]
    Other proteins in same PDB: d2q8ga1
    automated match to d2bu8a2
    complexed with azx, k
6. Domain for 2q8h:
  - Domain d2q8ha2: 2q8h A:215-423 [243529]
    Other proteins in same PDB: d2q8ha1
    automated match to d2bu8a2
    complexed with k, tf4
7. Domains for 2zdx:
  1. Domain d2zdxa2: 2zdx A:188-385 [244909]
    Other proteins in same PDB: d2zdxa1, d2zdxb1
    automated match to d2e0ab2
    complexed with p4a
  2. Domain d2zdxb2: 2zdx B:188-396 [244911]
    Other proteins in same PDB: d2zdxa1, d2zdxb1
    automated match to d2e0ab2
    complexed with p4a
8. Domains for 2zdy:
  1. Domain d2zdya2: 2zdy A:188-386 [244913]
    Other proteins in same PDB: d2zdya1, d2zdya3, d2zdyb1
    automated match to d2e0ab2
    complexed with adp, epe, mg
  2. Domain d2zdyb2: 2zdy B:188-398 [244915]
    Other proteins in same PDB: d2zdya1, d2zdya3, d2zdyb1
    automated match to d2e0ab2
    complexed with adp, epe, mg
9. Domains for 2zkj:
  1. Domain d2zkja2: 2zkj A:181-397 [244950]
    Other proteins in same PDB: d2zkja1, d2zkjb1
    automated match to d2bu8a2
    complexed with adp, mg, po4
  2. Domain d2zkjb2: 2zkj B:181-395 [262243]
    Other proteins in same PDB: d2zkja1, d2zkjb1
    automated match to d2zkja2
    complexed with adp, mg, po4
10. Domains for 3d2r:
  1. Domain d3d2ra2: 3d2r A:181-397 [245605]
    Other proteins in same PDB: d3d2ra1, d3d2rb1
    automated match to d2bu8a2
    complexed with adp, gol, mg
  2. Domain d3d2rb2: 3d2r B:181-397 [245607]
    Other proteins in same PDB: d3d2ra1, d3d2rb1
    automated match to d2bu8a2
    complexed with adp, gol, mg
11. Domains for 5f3k:
  1. Domain d5f3ka_: 5f3k A: [313949]
    automated match to d3omub_
  2. Domain d5f3kb_: 5f3k B: [313945]
    automated match to d3omub_
12. Domains for 5f5r:
  1. Domain d5f5ra_: 5f5r A: [313918]
    automated match to d3omub_
    complexed with anp, mg
  2. Domain d5f5rb_: 5f5r B: [314019]
    automated match to d3omub_
    complexed with anp, mg
Mycobacterium smegmatis [TaxId:1772] [228578] (2 PDB entries)
1. Domains for 4b6c:
  1. Domain d4b6ca_: 4b6c A: [307038]
    automated match to d5d7rb_
    protein/DNA complex; complexed with b5u, na
  2. Domain d4b6cb_: 4b6c B: [307039]
    automated match to d5d7rb_
    protein/DNA complex; complexed with b5u, na
2. Domains for 4bae:
  1. Domain d4baea_: 4bae A: [234131]
    automated match to d4baed_
    complexed with ca, rwx, so4
  2. Domain d4baeb_: 4bae B: [234132]
    automated match to d4baed_
    complexed with ca, rwx, so4
  3. Domain d4baec_: 4bae C: [234133]
    automated match to d4baed_
    complexed with ca, rwx, so4
  4. Domain d4baed_: 4bae D: [228579]
    automated match to d4emva_
    complexed with ca, rwx, so4
Myxococcus xanthus [TaxId:246197] [225452] (1 PDB entry)
- Domains for 3cwv:
  1. Domain d3cwva1: 3cwv A:8-206 [208972]
    Other proteins in same PDB: d3cwva2, d3cwvb2
    automated match to d1ei1a2
  2. Domain d3cwvb1: 3cwv B:10-206 [208974]
    Other proteins in same PDB: d3cwva2, d3cwvb2
    automated match to d1ei1a2
Staphylococcus aureus [TaxId:1280] [232247] (19 PDB entries)
1. Domains for 3g75:
  1. Domain d3g75a_: 3g75 A: [232249]
    automated match to d4gfna_
    complexed with b48
  2. Domain d3g75b_: 3g75 B: [232248]
    automated match to d4gfna_
    complexed with b48
2. Domains for 3g7b:
  1. Domain d3g7ba_: 3g7b A: [246254]
    automated match to d3g75b_
    complexed with b47
  2. Domain d3g7bb_: 3g7b B: [246255]
    automated match to d3g75b_
    complexed with b47
3. Domains for 3ttz:
  1. Domain d3ttza_: 3ttz A: [233741]
    automated match to d4gfna_
    complexed with 07n, mg
  2. Domain d3ttzb_: 3ttz B: [239831]
    automated match to d3ttza_
    complexed with 07n, mg
4. Domains for 3u2d:
  1. Domain d3u2da_: 3u2d A: [250068]
    automated match to d3ttza_
    complexed with 08b, mg
  2. Domain d3u2db_: 3u2d B: [250069]
    automated match to d3ttza_
    complexed with 08b, mg
5. Domains for 3u2k:
  1. Domain d3u2ka_: 3u2k A: [250070]
    automated match to d3ttza_
    complexed with 087, mg
  2. Domain d3u2kb_: 3u2k B: [250071]
    automated match to d3ttza_
    complexed with 087, mg
6. Domain for 4p8o:
  - Domain d4p8ob_: 4p8o B: [261238]
    automated match to d3ttzb_
    complexed with 883
7. Domains for 4urm:
  1. Domain d4urma_: 4urm A: [260090]
    automated match to d4k4oa_
    complexed with xam
  2. Domain d4urmb_: 4urm B: [264000]
    automated match to d4k4oa_
    complexed with xam
  3. Domain d4urmc_: 4urm C: [264001]
    automated match to d4k4oa_
    complexed with xam
  4. Domain d4urmd_: 4urm D: [264002]
    automated match to d4k4oa_
    complexed with xam
8. Domains for 4urn:
  1. Domain d4urna_: 4urn A: [260087]
    automated match to d4hymb1
    complexed with nov
  2. Domain d4urnb_: 4urn B: [258574]
    automated match to d4hymb1
    complexed with nov
  3. Domain d4urnc_: 4urn C: [264003]
    automated match to d4hymb1
    complexed with nov
9. Domains for 4uro:
  1. Domain d4uroa_: 4uro A: [258577]
    automated match to d4k4oa_
    complexed with nov
  2. Domain d4urob_: 4uro B: [260089]
    automated match to d4k4oa_
    complexed with nov
  3. Domain d4uroc_: 4uro C: [258579]
    automated match to d4k4oa_
    complexed with nov
  4. Domain d4urod_: 4uro D: [260088]
    automated match to d4k4oa_
    complexed with nov
10. Domains for 5cph:
  1. Domain d5cpha_: 5cph A: [312819]
    automated match to d3u2ka_
    protein/DNA complex; complexed with evo, mpd, so4
  2. Domain d5cphb_: 5cph B: [312831]
    automated match to d3u2ka_
    protein/DNA complex; complexed with evo, mpd, so4
11. Domain for 5ctu:
  - Domain d5ctua_: 5ctu A: [313370]
    automated match to d3u2ka_
12. Domains for 5ctw:
  1. Domain d5ctwa_: 5ctw A: [314540]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 55d, cl, mg, mpd
  2. Domain d5ctwb_: 5ctw B: [313395]
    automated match to d3u2ka_
13. Domains for 5ctx:
  1. Domain d5ctxa_: 5ctx A: [313553]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 55g, mg, mpd
  2. Domain d5ctxb_: 5ctx B: [313434]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 55g, mg, mpd
14. Domains for 5cty:
  1. Domain d5ctya_: 5cty A: [312930]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 55h, cl, mg, mpd
  2. Domain d5ctyb_: 5cty B: [312883]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 55h, cl, mg, mpd
15. Domains for 5d6p:
  1. Domain d5d6pa_: 5d6p A: [279583]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57u, gol, mpd
  2. Domain d5d6pb_: 5d6p B: [279582]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57u, gol, mpd
16. Domains for 5d6q:
  1. Domain d5d6qa_: 5d6q A: [279578]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57v, mg, mpd
  2. Domain d5d6qb_: 5d6q B: [279581]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57v, mg, mpd
17. Domains for 5d7c:
  1. Domain d5d7ca_: 5d7c A: [279584]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57w, mg, mpd
  2. Domain d5d7cb_: 5d7c B: [279585]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57w, mg, mpd
18. Domains for 5d7d:
  1. Domain d5d7da_: 5d7d A: [279259]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57x, cl, mg, mpd
  2. Domain d5d7db_: 5d7d B: [279260]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57x, cl, mg, mpd
19. Domains for 5d7r:
  1. Domain d5d7ra_: 5d7r A: [279442]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57y, cl, mg, mpd
  2. Domain d5d7rb_: 5d7r B: [279441]
    automated match to d3u2ka_
    protein/DNA complex; complexed with 57y, cl, mg, mpd
Staphylococcus aureus [TaxId:703339] [260729] (1 PDB entry)
- Domain for 4p8o:
  - Domain d4p8oa_: 4p8o A: [260730]
    automated match to d3ttzb_
    complexed with 883
Streptococcus pneumoniae [TaxId:171101] [273854] (2 PDB entries)
1. Domain for 5boc:
  - Domain d5boca_: 5boc A: [273857]
    automated match to d4hymb1
    complexed with tsj
2. Domain for 5bod:
  - Domain d5boda_: 5bod A: [273856]
    automated match to d4hymb1
    complexed with ttj
Streptococcus pneumoniae [TaxId:760835] [226426] (7 PDB entries)
1. Domain for 4em7:
  - Domain d4em7a_: 4em7 A: [220646]
    automated match to d1aj6a_
    complexed with 0ra
2. Domain for 4emv:
  - Domain d4emva_: 4emv A: [220665]
    automated match to d1aj6a_
    complexed with 0r9
3. Domain for 4lp0:
  - Domain d4lp0a_: 4lp0 A: [228969]
    automated match to d4em7a_
    complexed with 1ym
4. Domain for 4lpb:
  - Domain d4lpba_: 4lpb A: [228705]
    automated match to d4em7a_
    complexed with 1yp
5. Domain for 4mb9:
  - Domain d4mb9a_: 4mb9 A: [228391]
    automated match to d4em7a_
    complexed with 28f, so4
6. Domain for 4mbc:
  - Domain d4mbca_: 4mbc A: [228390]
    automated match to d4em7a_
    complexed with 28g
7. Domain for 4mot:
  - Domain d4mota_: 4mot A: [229497]
    automated match to d4em7a_
    complexed with 2b7
Xanthomonas oryzae [TaxId:291331] [226075] (2 PDB entries)
1. Domain for 3lnu:
  - Domain d3lnua1: 3lnu A:59-260 [212976]
    Other proteins in same PDB: d3lnua2
    automated match to d1s16a2
2. Domain for 3lps:
  - Domain d3lpsa1: 3lps A:59-260 [212987]
    Other proteins in same PDB: d3lpsa2
    automated match to d1s16a2
    complexed with nov

More info for Protein automated matches from d.122.1.0: automated matches

Timeline for Protein automated matches from d.122.1.0: automated matches:

Protein automated matches from d.122.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.122.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.122.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from d.122.1.0: automated matches appears in the current release, SCOPe 2.08