SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.51: Eukaryotic type KH-domain (KH-domain type I) [54790] (1 superfamily)
beta-alpha(2)-beta(2)-alpha; 2 layers: alpha/beta
Superfamily d.51.1: Eukaryotic type KH-domain (KH-domain type I) [54791] (2 families)
Prokaryotic and eukaryotic domains share a KH-motif but have different topologies
Family d.51.1.0: automated matches [227159] (1 protein)
not a true family
Protein automated matches [226866] (4 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [225002] (8 PDB entries)
1. Domains for 1zzi:
  1. Domain d1zzia_: 1zzi A: [125904]
    automated match to d1ec6a_
    protein/DNA complex
  2. Domain d1zzib_: 1zzi B: [125905]
    automated match to d1ec6a_
    protein/DNA complex
2. Domains for 1zzj:
  1. Domain d1zzja_: 1zzj A: [125906]
    automated match to d1ec6a_
    protein/DNA complex
  2. Domain d1zzjb_: 1zzj B: [125907]
    automated match to d1ec6a_
    protein/DNA complex
  3. Domain d1zzjc_: 1zzj C: [125908]
    automated match to d1ec6a_
    protein/DNA complex
3. Domain for 1zzk:
  - Domain d1zzka_: 1zzk A: [125909]
    automated match to d1ec6a_
4. Domains for 2ann:
  1. Domain d2anna1: 2ann A:3-76 [241236]
    automated match to d1dtjd_
    protein/RNA complex; complexed with k, mg
  2. Domain d2anna2: 2ann A:106-177 [241237]
    automated match to d1dtjd_
    protein/RNA complex; complexed with k, mg
5. Domains for 2anr:
  1. Domain d2anra1: 2anr A:3-76 [241238]
    automated match to d1dtjd_
    protein/RNA complex; complexed with k, mg
  2. Domain d2anra2: 2anr A:106-178 [241239]
    automated match to d1dtjd_
    protein/RNA complex; complexed with k, mg
6. Domain for 2hh2:
  - Domain d2hh2a_: 2hh2 A: [242036]
    automated match to d1zzia_
7. Domain for 2hh3:
  - Domain d2hh3a_: 2hh3 A: [242037]
    automated match to d4lija_
8. Domain for 2opu:
  - Domain d2opua_: 2opu A: [243354]
    automated match to d1zzka_
Pyrococcus horikoshii [TaxId:53953] [225879] (1 PDB entry)
- Domains for 3aev:
  1. Domain d3aevb1: 3aev B:26-115 [208199]
    automated match to d1tuaa1
    protein/RNA complex
  2. Domain d3aevb2: 3aev B:116-208 [208200]
    automated match to d1tuaa2
    protein/RNA complex
Pyrococcus horikoshii [TaxId:70601] [225353] (1 PDB entry)
- Domains for 2e3u:
  1. Domain d2e3ua1: 2e3u A:33-115 [204074]
    automated match to d1tuaa1
  2. Domain d2e3ua2: 2e3u A:116-204 [204075]
    automated match to d1tuaa2

Sulfolobus solfataricus [TaxId:2287] [255920] (1 PDB entry)

Domains for 3l7z:

Domain d3l7zc3: 3l7z C:153-228 [239408]
Other proteins in same PDB: d3l7za1, d3l7za2, d3l7zc1, d3l7zc2, d3l7zd1, d3l7zd2, d3l7zg1, d3l7zg2, d3l7zi1, d3l7zi2
automated match to d2je6i3
protein/RNA complex; complexed with so4

Domain d3l7zi3: 3l7z I:153-226 [239411]
Other proteins in same PDB: d3l7za1, d3l7za2, d3l7zc1, d3l7zc2, d3l7zd1, d3l7zd2, d3l7zg1, d3l7zg2, d3l7zi1, d3l7zi2
automated match to d2je6i3
protein/RNA complex; complexed with so4

More info for Protein automated matches from d.51.1.0: automated matches

Timeline for Protein automated matches from d.51.1.0: automated matches:

Protein automated matches from d.51.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.51.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.51.1.0: automated matches appears in the current release, SCOPe 2.08