Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1862683Fold c.58: Aminoacid dehydrogenase-like, N-terminal domain [53222] (1 superfamily)
    core: 3 layers: a/b/a; parallel beta-sheet of 4 strands; 2134
  4. 1862684Superfamily c.58.1: Aminoacid dehydrogenase-like, N-terminal domain [53223] (6 families) (S)
  5. 1862988Family c.58.1.0: automated matches [227157] (1 protein)
    not a true family
  6. 1862989Protein automated matches [226864] (23 species)
    not a true protein

Species:

  1. 1862990Acinetobacter baumannii [TaxId:575584] [226445] (3 PDB entries)
    1. Domains for 4b4u:
      1. 1862991Domain d4b4ua1: 4b4u A:1-121 [219312]
        Other proteins in same PDB: d4b4ua2, d4b4ub2
        automated match to d1a4ia2
        complexed with cl, edo, nap, peg
      2. 1862992Domain d4b4ub1: 4b4u B:-3-121 [219314]
        Other proteins in same PDB: d4b4ua2, d4b4ub2
        automated match to d1a4ia2
        complexed with cl, edo, nap, peg
    2. Domains for 4b4v:
      1. 1862993Domain d4b4va1: 4b4v A:1-121 [219316]
        Other proteins in same PDB: d4b4va2, d4b4vb2
        automated match to d1a4ia2
        complexed with cl, gol, l34, nap
      2. 1862994Domain d4b4vb1: 4b4v B:1-121 [219318]
        Other proteins in same PDB: d4b4va2, d4b4vb2
        automated match to d1a4ia2
        complexed with cl, gol, l34, nap
    3. Domains for 4b4w:
      1. 1862995Domain d4b4wa1: 4b4w A:1-121 [219320]
        Other proteins in same PDB: d4b4wa2, d4b4wb2
        automated match to d1a4ia2
        complexed with 9l9, cl, gol, nap
      2. 1862996Domain d4b4wb1: 4b4w B:1-121 [219322]
        Other proteins in same PDB: d4b4wa2, d4b4wb2
        automated match to d1a4ia2
        complexed with 9l9, cl, gol, nap
  2. 1862997Bacillus subtilis [TaxId:1423] [225904] (2 PDB entries)
    1. Domains for 3k8z:
      1. 1863004Domain d3k8za1: 3k8z A:17-188 [212213]
        Other proteins in same PDB: d3k8za2, d3k8zb2, d3k8zc2, d3k8zd2, d3k8ze2, d3k8zf2
        automated match to d1euza2
      2. 1863005Domain d3k8zb1: 3k8z B:17-188 [212215]
        Other proteins in same PDB: d3k8za2, d3k8zb2, d3k8zc2, d3k8zd2, d3k8ze2, d3k8zf2
        automated match to d1euza2
      3. 1863006Domain d3k8zc1: 3k8z C:17-188 [212217]
        Other proteins in same PDB: d3k8za2, d3k8zb2, d3k8zc2, d3k8zd2, d3k8ze2, d3k8zf2
        automated match to d1euza2
      4. 1863007Domain d3k8zd1: 3k8z D:17-188 [212219]
        Other proteins in same PDB: d3k8za2, d3k8zb2, d3k8zc2, d3k8zd2, d3k8ze2, d3k8zf2
        automated match to d1euza2
      5. 1863008Domain d3k8ze1: 3k8z E:17-188 [212221]
        Other proteins in same PDB: d3k8za2, d3k8zb2, d3k8zc2, d3k8zd2, d3k8ze2, d3k8zf2
        automated match to d1euza2
      6. 1863009Domain d3k8zf1: 3k8z F:17-188 [212223]
        Other proteins in same PDB: d3k8za2, d3k8zb2, d3k8zc2, d3k8zd2, d3k8ze2, d3k8zf2
        automated match to d1euza2
    2. Domains for 3k92:
      1. 1862998Domain d3k92a1: 3k92 A:7-190 [212225]
        Other proteins in same PDB: d3k92a2, d3k92b2, d3k92c2, d3k92d2, d3k92e2, d3k92f2
        automated match to d1v9la2
        complexed with peg; mutant
      2. 1862999Domain d3k92b1: 3k92 B:16-190 [212227]
        Other proteins in same PDB: d3k92a2, d3k92b2, d3k92c2, d3k92d2, d3k92e2, d3k92f2
        automated match to d1v9la2
        complexed with peg; mutant
      3. 1863000Domain d3k92c1: 3k92 C:16-190 [212229]
        Other proteins in same PDB: d3k92a2, d3k92b2, d3k92c2, d3k92d2, d3k92e2, d3k92f2
        automated match to d1v9la2
        complexed with peg; mutant
      4. 1863001Domain d3k92d1: 3k92 D:16-190 [212231]
        Other proteins in same PDB: d3k92a2, d3k92b2, d3k92c2, d3k92d2, d3k92e2, d3k92f2
        automated match to d1v9la2
        complexed with peg; mutant
      5. 1863002Domain d3k92e1: 3k92 E:12-190 [212233]
        Other proteins in same PDB: d3k92a2, d3k92b2, d3k92c2, d3k92d2, d3k92e2, d3k92f2
        automated match to d1v9la2
        complexed with peg; mutant
      6. 1863003Domain d3k92f1: 3k92 F:14-190 [212235]
        Other proteins in same PDB: d3k92a2, d3k92b2, d3k92c2, d3k92d2, d3k92e2, d3k92f2
        automated match to d1v9la2
        complexed with peg; mutant
  3. 1863010Burkholderia thailandensis [TaxId:271848] [269204] (1 PDB entry)
  4. 1863017Campylobacter jejuni [TaxId:192222] [225996] (1 PDB entry)
  5. 1863020Escherichia coli [TaxId:562] [234160] (1 PDB entry)
  6. 1863027Escherichia coli [TaxId:83334] [226480] (1 PDB entry)
  7. 1863040Francisella tularensis [TaxId:177416] [225804] (1 PDB entry)
  8. 1863043Helicobacter pylori [TaxId:85962] [226243] (10 PDB entries)
    1. Domains for 3phg:
      1. 1863045Domain d3phga1: 3phg A:1-104 [214786]
        Other proteins in same PDB: d3phga2, d3phgb2
        automated match to d1p77a2
      2. 1863046Domain d3phgb1: 3phg B:1-104 [214788]
        Other proteins in same PDB: d3phga2, d3phgb2
        automated match to d1p77a2
    2. Domain for 3phh:
    3. Domains for 3phi:
      1. 1863048Domain d3phia1: 3phi A:1-104 [214792]
        Other proteins in same PDB: d3phia2, d3phib2
        automated match to d1p77a2
        complexed with ndp, skm
      2. 1863049Domain d3phib1: 3phi B:1-104 [214794]
        Other proteins in same PDB: d3phia2, d3phib2
        automated match to d1p77a2
        complexed with ndp, skm
    4. Domains for 3phj:
      1. 1863054Domain d3phja1: 3phj A:1-104 [214796]
        Other proteins in same PDB: d3phja2, d3phjb2
        automated match to d1p77a2
        complexed with dhk
      2. 1863055Domain d3phjb1: 3phj B:1-104 [214798]
        Other proteins in same PDB: d3phja2, d3phjb2
        automated match to d1p77a2
        complexed with dhk
    5. Domains for 4foo:
      1. 1863058Domain d4fooa1: 4foo A:1-104 [221405]
        Other proteins in same PDB: d4fooa2, d4foob2
        automated match to d1p77a2
        mutant
      2. 1863059Domain d4foob1: 4foo B:1-104 [221407]
        Other proteins in same PDB: d4fooa2, d4foob2
        automated match to d1p77a2
        mutant
    6. Domain for 4fos:
    7. Domains for 4fpx:
      1. 1863056Domain d4fpxa1: 4fpx A:1-104 [221435]
        Other proteins in same PDB: d4fpxa2, d4fpxb2
        automated match to d1p77a2
        mutant
      2. 1863057Domain d4fpxb1: 4fpx B:1-104 [221437]
        Other proteins in same PDB: d4fpxa2, d4fpxb2
        automated match to d1p77a2
        mutant
    8. Domains for 4fq8:
      1. 1863050Domain d4fq8a1: 4fq8 A:1-104 [221442]
        Other proteins in same PDB: d4fq8a2, d4fq8b2
        automated match to d1p77a2
        complexed with skm; mutant
      2. 1863051Domain d4fq8b1: 4fq8 B:1-104 [221444]
        Other proteins in same PDB: d4fq8a2, d4fq8b2
        automated match to d1p77a2
        complexed with skm; mutant
    9. Domains for 4fr5:
      1. 1863052Domain d4fr5a1: 4fr5 A:1-104 [221475]
        Other proteins in same PDB: d4fr5a2, d4fr5b2
        automated match to d1p77a2
        complexed with skm; mutant
      2. 1863053Domain d4fr5b1: 4fr5 B:1-104 [221477]
        Other proteins in same PDB: d4fr5a2, d4fr5b2
        automated match to d1p77a2
        complexed with skm; mutant
    10. Domains for 4fsh:
      1. 1863060Domain d4fsha1: 4fsh A:1-104 [221491]
        Other proteins in same PDB: d4fsha2, d4fshb2
        automated match to d1p77a2
        complexed with skm
      2. 1863061Domain d4fshb1: 4fsh B:1-104 [221493]
        Other proteins in same PDB: d4fsha2, d4fshb2
        automated match to d1p77a2
        complexed with skm
  9. 1863062Human (Homo sapiens) [TaxId:9606] [225016] (2 PDB entries)
    1. Domains for 2aw5:
      1. 1863063Domain d2aw5a1: 2aw5 A:15-269 [203498]
        Other proteins in same PDB: d2aw5a2, d2aw5b2, d2aw5c2
        automated match to d1gq2a2
      2. 1863064Domain d2aw5b1: 2aw5 B:15-269 [203500]
        Other proteins in same PDB: d2aw5a2, d2aw5b2, d2aw5c2
        automated match to d1gq2a2
      3. 1863065Domain d2aw5c1: 2aw5 C:15-269 [203502]
        Other proteins in same PDB: d2aw5a2, d2aw5b2, d2aw5c2
        automated match to d1gq2a2
    2. Domains for 3wja:
      1. 1863066Domain d3wjaa1: 3wja A:18-279 [262424]
        Other proteins in same PDB: d3wjaa2, d3wjab2
        automated match to d3wjab1
      2. 1863067Domain d3wjab1: 3wja B:18-279 [259044]
        Other proteins in same PDB: d3wjaa2, d3wjab2
        automated match to d1gq2a2
  10. 1863068Leishmania major [TaxId:5664] [226236] (1 PDB entry)
  11. 1863071Listeria monocytogenes [TaxId:169963] [226202] (2 PDB entries)
    1. Domains for 3tnl:
      1. 1863072Domain d3tnla1: 3tnl A:4-112 [216884]
        Other proteins in same PDB: d3tnla2, d3tnlb2, d3tnlc2, d3tnld2
        automated match to d1npda2
        complexed with cl, nad, skm
      2. 1863073Domain d3tnlb1: 3tnl B:3-112 [216886]
        Other proteins in same PDB: d3tnla2, d3tnlb2, d3tnlc2, d3tnld2
        automated match to d1npda2
        complexed with cl, nad, skm
      3. 1863074Domain d3tnlc1: 3tnl C:3-112 [216888]
        Other proteins in same PDB: d3tnla2, d3tnlb2, d3tnlc2, d3tnld2
        automated match to d1npda2
        complexed with cl, nad, skm
      4. 1863075Domain d3tnld1: 3tnl D:4-112 [216890]
        Other proteins in same PDB: d3tnla2, d3tnlb2, d3tnlc2, d3tnld2
        automated match to d1npda2
        complexed with cl, nad, skm
    2. Domains for 3toz:
      1. 1863076Domain d3toza1: 3toz A:1-112 [216928]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
      2. 1863077Domain d3tozb1: 3toz B:2-112 [216930]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
      3. 1863078Domain d3tozc1: 3toz C:5-112 [216932]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
      4. 1863079Domain d3tozd1: 3toz D:3-112 [216934]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
      5. 1863080Domain d3toze1: 3toz E:3-112 [216936]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
      6. 1863081Domain d3tozf1: 3toz F:5-112 [216938]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
      7. 1863082Domain d3tozg1: 3toz G:1-112 [216940]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
      8. 1863083Domain d3tozh1: 3toz H:1-112 [216942]
        Other proteins in same PDB: d3toza2, d3tozb2, d3tozc2, d3tozd2, d3toze2, d3tozf2, d3tozg2, d3tozh2
        automated match to d1npda2
        complexed with cl, nad, so4
  12. 1863084Mycobacterium tuberculosis [TaxId:83332] [225030] (2 PDB entries)
    1. Domains for 2c2x:
      1. 1863085Domain d2c2xa1: 2c2x A:2-121 [203709]
        Other proteins in same PDB: d2c2xa2, d2c2xb2
        automated match to d1a4ia2
      2. 1863086Domain d2c2xb1: 2c2x B:2-121 [203711]
        Other proteins in same PDB: d2c2xa2, d2c2xb2
        automated match to d1a4ia2
    2. Domain for 2c2y:
  13. 1863088Peptoclostridium difficile [TaxId:272563] [277863] (1 PDB entry)
  14. 1863091Peptoniphilus asaccharolyticus [TaxId:1258] [226258] (1 PDB entry)
  15. 1863094Plasmodium falciparum [TaxId:36329] [256049] (1 PDB entry)
  16. 1863101Pseudomonas aeruginosa [TaxId:208964] [226249] (1 PDB entry)
  17. 1863106Pseudomonas putida [TaxId:160488] [257299] (1 PDB entry)
  18. 1863108Pseudomonas putida [TaxId:303] [226208] (1 PDB entry)
  19. 1863110Salmonella enterica [TaxId:90371] [226189] (1 PDB entry)
  20. 1863113Sporosarcina psychrophila [TaxId:1476] [226586] (1 PDB entry)
  21. 1863116Streptococcus pyogenes [TaxId:1314] [224996] (1 PDB entry)
  22. 1863119Thermoplasma acidophilum [TaxId:2303] [226113] (2 PDB entries)
    1. Domains for 3ngl:
      1. 1863122Domain d3ngla1: 3ngl A:2-115 [213935]
        Other proteins in same PDB: d3ngla2, d3nglc2
        automated match to d1a4ia2
        complexed with nap
      2. 1863123Domain d3nglc1: 3ngl C:2-115 [213937]
        Other proteins in same PDB: d3ngla2, d3nglc2
        automated match to d1a4ia2
        complexed with nap
    2. Domains for 3ngx:
      1. 1863120Domain d3ngxa1: 3ngx A:2-115 [213939]
        Other proteins in same PDB: d3ngxa2, d3ngxb2
        automated match to d1a4ia2
      2. 1863121Domain d3ngxb1: 3ngx B:2-115 [213941]
        Other proteins in same PDB: d3ngxa2, d3ngxb2
        automated match to d1a4ia2
  23. Thermotoga maritima [TaxId:2336] [255205] (1 PDB entry)

More info for Protein automated matches from c.58.1.0: automated matches

Timeline for Protein automated matches from c.58.1.0: automated matches: