Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1987359Fold a.24: Four-helical up-and-down bundle [47161] (28 superfamilies)
    core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down
  4. 1987801Superfamily a.24.9: alpha-catenin/vinculin-like [47220] (2 families) (S)
  5. 1987802Family a.24.9.1: alpha-catenin/vinculin [47221] (3 protein domains)
    possible duplication: contains several domains of this fold
    The listed PDB entries contain different large fragments but not the whole proteins
  6. 1987854Protein automated matches [226863] (2 species)
    not a true protein

Species:

  1. 1987855Chicken (Gallus gallus) [TaxId:9031] [225109] (3 PDB entries)
    1. Domains for 2gdc:
      1. 1987860Domain d2gdca1: 2gdc A:2-128 [230742]
        automated match to d1syqa1
      2. 1987861Domain d2gdca2: 2gdc A:129-250 [230743]
        automated match to d1rkea2
    2. Domains for 4e17:
      1. 1987856Domain d4e17a1: 4e17 A:1-128 [220143]
        Other proteins in same PDB: d4e17a3
        automated match to d1syqa1
      2. 1987857Domain d4e17a2: 4e17 A:129-254 [220144]
        Other proteins in same PDB: d4e17a3
        automated match to d1rkea2
    3. Domains for 4e18:
      1. 1987858Domain d4e18a1: 4e18 A:1-128 [220145]
        Other proteins in same PDB: d4e18a3
        automated match to d1syqa1
      2. 1987859Domain d4e18a2: 4e18 A:129-254 [220146]
        Other proteins in same PDB: d4e18a3
        automated match to d1rkea2
  2. 1987862Human (Homo sapiens) [TaxId:9606] [224995] (5 PDB entries)
    1. Domains for 1ydi:
      1. 1987866Domain d1ydia1: 1ydi A:1-128 [230417]
        Other proteins in same PDB: d1ydia3
        automated match to d1syqa1
      2. 1987867Domain d1ydia2: 1ydi A:129-258 [230418]
        Other proteins in same PDB: d1ydia3
        automated match to d1rkea2
    2. Domains for 2gww:
      1. 1987868Domain d2gwwa1: 2gww A:1-128 [230751]
        Other proteins in same PDB: d2gwwa3
        automated match to d1syqa1
      2. 1987869Domain d2gwwa2: 2gww A:129-258 [230752]
        Other proteins in same PDB: d2gwwa3
        automated match to d1rkea2
    3. Domains for 3h2u:
      1. 1987870Domain d3h2ua_: 3h2u A: [210807]
        automated match to d1qkrb_
        protein/RNA complex
      2. 1987871Domain d3h2uc_: 3h2u C: [210808]
        automated match to d1qkrb_
        protein/RNA complex
    4. Domains for 3h2v:
      1. 1987872Domain d3h2va_: 3h2v A: [199488]
        Other proteins in same PDB: d3h2ve1, d3h2ve2, d3h2vf1, d3h2vf2, d3h2vg1, d3h2vg2, d3h2vh1, d3h2vh2
        automated match to d1qkrb_
        protein/RNA complex
      2. 1987873Domain d3h2vb_: 3h2v B: [199489]
        Other proteins in same PDB: d3h2ve1, d3h2ve2, d3h2vf1, d3h2vf2, d3h2vg1, d3h2vg2, d3h2vh1, d3h2vh2
        automated match to d1qkrb_
        protein/RNA complex
      3. 1987874Domain d3h2vc_: 3h2v C: [199490]
        Other proteins in same PDB: d3h2ve1, d3h2ve2, d3h2vf1, d3h2vf2, d3h2vg1, d3h2vg2, d3h2vh1, d3h2vh2
        automated match to d1qkrb_
        protein/RNA complex
      4. 1987875Domain d3h2vd_: 3h2v D: [199491]
        Other proteins in same PDB: d3h2ve1, d3h2ve2, d3h2vf1, d3h2vf2, d3h2vg1, d3h2vg2, d3h2vh1, d3h2vh2
        automated match to d1qkrb_
        protein/RNA complex
    5. Domains for 3rf3:
      1. 1987863Domain d3rf3a1: 3rf3 A:2-128 [233446]
        automated match to d1syqa1
        complexed with cac
      2. 1987864Domain d3rf3b1: 3rf3 B:1-128 [233444]
        automated match to d1syqa1
        complexed with cac
      3. 1987865Domain d3rf3b2: 3rf3 B:129-258 [233445]
        automated match to d1rkea2
        complexed with cac

More info for Protein automated matches from a.24.9.1: alpha-catenin/vinculin

Timeline for Protein automated matches from a.24.9.1: alpha-catenin/vinculin: